Wall clock time and date at job start Mon Mar 30 2020 02:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.78230 * 2 1 4 4 C 1.54938 * 110.72436 * 236.75140 * 2 1 3 5 5 N 1.48529 * 103.22971 * 204.22619 * 4 2 1 6 6 C 1.46901 * 111.00344 * 159.72335 * 5 4 2 7 7 C 1.52996 * 109.47195 * 170.00251 * 6 5 4 8 8 C 1.52997 * 109.46947 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99883 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00043 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47216 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 119.99848 * 13 11 9 16 16 H 1.48501 * 109.47057 * 239.99829 * 13 11 9 17 17 C 1.47902 * 105.81792 * 39.20862 * 5 4 2 18 18 C 1.53991 * 107.05966 * 334.66866 * 17 5 4 19 19 H 1.08997 * 110.30981 * 120.14448 * 18 17 5 20 20 N 1.46896 * 110.31246 * 242.31001 * 18 17 5 21 21 H 1.09004 * 109.46989 * 181.79617 * 1 2 3 22 22 H 1.09003 * 109.47427 * 301.78813 * 1 2 3 23 23 H 1.09001 * 109.47444 * 61.79840 * 1 2 3 24 24 H 1.09006 * 110.66706 * 85.79161 * 4 2 1 25 25 H 1.08996 * 110.81220 * 322.73181 * 4 2 1 26 26 H 1.08992 * 109.46788 * 49.99882 * 6 5 4 27 27 H 1.08996 * 109.46661 * 290.00185 * 6 5 4 28 28 H 1.09001 * 109.47372 * 60.00105 * 7 6 5 29 29 H 1.09004 * 109.47108 * 299.99849 * 7 6 5 30 30 H 1.09001 * 109.46832 * 59.99979 * 8 7 6 31 31 H 1.09000 * 109.47611 * 300.00276 * 8 7 6 32 32 H 0.97004 * 119.99507 * 180.02562 * 12 11 9 33 33 H 1.08996 * 109.91767 * 94.02488 * 17 5 4 34 34 H 1.09002 * 109.91985 * 215.31817 * 17 5 4 35 35 H 1.00904 * 111.00165 * 295.71485 * 20 18 17 36 36 H 1.00901 * 111.00117 * 59.66554 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0782 -0.7945 -1.2119 5 7 3.4317 -1.2092 -0.7623 6 6 3.9212 -2.3497 -1.5482 7 6 5.3992 -2.5892 -1.2334 8 6 5.9087 -3.7775 -2.0515 9 6 7.3647 -4.0131 -1.7420 10 1 7.8753 -3.3789 -1.0324 11 6 8.0448 -5.0381 -2.3647 12 7 7.4230 -5.8099 -3.2291 13 14 9.8493 -5.3305 -1.9805 14 1 10.3111 -4.3322 -0.9828 15 1 10.0228 -6.6985 -1.4294 16 1 10.6488 -5.1928 -3.2243 17 6 3.2893 -1.5709 0.6647 18 6 2.0771 -0.7928 1.2092 19 1 1.3208 -1.4834 1.5823 20 7 2.4982 0.1275 2.2739 21 1 -0.3633 -1.0272 0.0322 22 1 -0.3634 0.5414 0.8735 23 1 -0.3634 0.4856 -0.9057 24 1 2.1444 -0.1557 -2.0927 25 1 1.4569 -1.6664 -1.4165 26 1 3.8061 -2.1350 -2.6105 27 1 3.3465 -3.2400 -1.2931 28 1 5.5143 -2.8040 -0.1710 29 1 5.9739 -1.6988 -1.4885 30 1 5.7935 -3.5631 -3.1140 31 1 5.3339 -4.6677 -1.7961 32 1 7.9014 -6.5313 -3.6669 33 1 3.1161 -2.6428 0.7606 34 1 4.1886 -1.2871 1.2114 35 1 2.8573 -0.3795 3.0689 36 1 3.1771 0.7905 1.9311 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300047412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:19 Heat of formation + Delta-G solvation = -18.752364 kcal Electronic energy + Delta-G solvation = -14181.199418 eV Core-core repulsion = 11892.073329 eV Total energy + Delta-G solvation = -2289.126089 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.34664 -35.11142 -33.26780 -32.31098 -30.91462 -27.49788 -26.79499 -24.76456 -22.63955 -20.93760 -20.59518 -19.43275 -16.33879 -16.11475 -15.76466 -15.05438 -14.49542 -14.29177 -14.11076 -13.18769 -13.10548 -12.76025 -12.46004 -12.26880 -11.95932 -11.56923 -11.24799 -11.15166 -10.89754 -10.80277 -10.66966 -10.53333 -10.41609 -9.64672 -9.32001 -9.04098 -8.77877 -8.34035 -8.18772 -5.99035 -4.01033 3.31517 3.38804 3.43441 4.18009 4.40975 4.47323 4.58164 4.77597 5.02674 5.25094 5.36615 5.36846 5.47560 5.58795 5.65234 5.73266 5.78859 5.87960 5.96529 6.03767 6.06660 6.25909 6.32526 6.67009 6.77341 7.04153 7.05112 7.20014 7.35872 7.37491 7.69491 7.84209 8.01508 8.45085 9.06323 9.63008 11.12520 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.060929 B = 0.005259 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.440236 B = 5323.305994 C = 5635.583364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 H 0.085 0.915 4 C 0.034 3.966 5 N -0.516 5.516 6 C 0.047 3.953 7 C -0.101 4.101 8 C 0.021 3.979 9 C -0.517 4.517 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.003 3.997 18 C 0.083 3.917 19 H 0.083 0.917 20 N -0.840 5.840 21 H 0.052 0.948 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.080 0.920 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.016 0.984 31 H 0.013 0.987 32 H 0.259 0.741 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.340 0.660 36 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.985 9.982 7.100 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 H 0.103 0.897 4 C -0.094 4.094 5 N -0.240 5.240 6 C -0.081 4.081 7 C -0.139 4.139 8 C -0.017 4.017 9 C -0.556 4.556 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.127 4.127 18 C -0.029 4.029 19 H 0.102 0.898 20 N -0.369 5.369 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.152 0.848 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.340 10.477 6.938 17.611 hybrid contribution 1.474 -1.509 0.014 2.110 sum -10.865 8.967 6.952 15.710 Atomic orbital electron populations 1.21721 0.94469 1.01646 1.01800 1.22085 0.95475 0.99776 0.93310 0.89701 1.23324 0.89734 0.98417 0.97914 1.64786 1.22043 1.35218 1.01913 1.22485 0.98095 0.89949 0.97544 1.21582 0.91858 1.00447 1.00045 1.19088 0.95699 0.91875 0.95015 1.21288 0.95697 1.14303 1.24281 0.92669 1.25031 0.98276 0.96059 0.95165 1.69983 1.36356 1.19126 1.28175 0.86540 0.85325 0.77995 0.78182 1.19736 1.21041 1.20987 1.23807 0.98683 0.99057 0.91171 1.22445 0.95669 0.93274 0.91545 0.89844 1.58947 1.48439 1.20104 1.09368 0.92927 0.92142 0.92628 0.90176 0.93834 0.91234 0.95122 0.93800 0.92690 0.96593 0.96886 0.93100 0.93550 0.90657 0.84775 0.84304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.16 37.16 0.34 -0.95 16 2 C -0.09 -0.96 3.35 -88.76 -0.30 -1.26 16 3 H 0.08 0.97 7.95 -51.93 -0.41 0.55 16 4 C 0.03 0.44 5.96 -1.90 -0.01 0.43 16 5 N -0.52 -7.98 5.25 -230.46 -1.21 -9.19 16 6 C 0.05 0.85 4.78 -3.83 -0.02 0.83 16 7 C -0.10 -2.18 5.24 -26.73 -0.14 -2.33 16 8 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 9 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 10 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 13 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 C 0.00 0.04 5.70 -2.76 -0.02 0.03 16 18 C 0.08 0.94 3.71 -66.36 -0.25 0.70 16 19 H 0.08 0.93 7.82 -51.93 -0.41 0.52 16 20 N -0.84 -8.47 9.17 -3.52 -0.03 -8.50 16 21 H 0.05 0.48 8.10 -51.93 -0.42 0.06 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.04 0.55 7.93 -51.93 -0.41 0.14 16 26 H 0.07 1.25 8.08 -51.93 -0.42 0.84 16 27 H 0.03 0.56 7.73 -51.93 -0.40 0.16 16 28 H 0.04 0.94 7.62 -51.93 -0.40 0.54 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.05 0.68 7.52 -51.93 -0.39 0.29 16 34 H 0.08 1.07 7.93 -51.93 -0.41 0.65 16 35 H 0.34 3.01 9.08 -39.29 -0.36 2.66 16 36 H 0.34 3.41 8.88 -39.29 -0.35 3.06 16 LS Contribution 289.56 15.07 4.36 4.36 Total: -1.00 -30.37 289.56 -8.55 -38.93 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.45 Total: 0.03 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -0.94 Total: -15.94 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -0.50 Total: -44.33 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.37 -8.55 -38.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300047412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.174 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds