Wall clock time and date at job start Mon Mar 30 2020 03:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47211 * 2 1 4 4 C 1.50702 * 109.46882 * 240.00387 * 2 1 3 5 5 H 1.08002 * 120.00349 * 245.62865 * 4 2 1 6 6 C 1.37881 * 119.99969 * 65.62938 * 4 2 1 7 7 N 1.31515 * 119.99858 * 8.78442 * 6 4 2 8 8 Si 1.86794 * 120.00059 * 188.78453 * 6 4 2 9 9 H 1.48501 * 109.46990 * 94.98735 * 8 6 4 10 10 H 1.48501 * 109.47542 * 214.98537 * 8 6 4 11 11 H 1.48502 * 109.47555 * 334.98770 * 8 6 4 12 12 N 1.46895 * 109.47347 * 120.00451 * 2 1 3 13 13 C 1.46900 * 110.99894 * 58.95252 * 12 2 1 14 14 C 1.46900 * 111.00307 * 295.00122 * 12 2 1 15 15 C 1.53005 * 109.46901 * 287.90414 * 14 12 2 16 16 H 1.08996 * 109.90682 * 62.56581 * 15 14 12 17 17 C 1.53985 * 109.91599 * 183.67320 * 15 14 12 18 18 C 1.54604 * 105.13916 * 120.57602 * 17 15 14 19 19 C 1.54936 * 102.92055 * 21.95471 * 18 17 15 20 20 N 1.47906 * 109.91274 * 301.26373 * 15 14 12 21 21 H 1.08997 * 109.47475 * 61.64039 * 1 2 3 22 22 H 1.08997 * 109.47273 * 181.64038 * 1 2 3 23 23 H 1.08997 * 109.46976 * 301.64308 * 1 2 3 24 24 H 0.97007 * 119.99713 * 179.97438 * 7 6 4 25 25 H 1.08994 * 109.47236 * 297.11016 * 13 12 2 26 26 H 1.09000 * 109.47296 * 57.11169 * 13 12 2 27 27 H 1.09000 * 109.47217 * 177.11249 * 13 12 2 28 28 H 1.08999 * 109.47141 * 47.89717 * 14 12 2 29 29 H 1.08993 * 109.47289 * 167.90444 * 14 12 2 30 30 H 1.09001 * 110.30809 * 239.48787 * 17 15 14 31 31 H 1.08995 * 110.31485 * 1.56545 * 17 15 14 32 32 H 1.08999 * 110.72333 * 140.31444 * 18 17 15 33 33 H 1.09001 * 110.72347 * 263.60029 * 18 17 15 34 34 H 1.09006 * 110.66827 * 81.02107 * 19 18 17 35 35 H 1.08996 * 110.66823 * 203.98370 * 19 18 17 36 36 H 1.00895 * 111.00235 * 335.83251 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5762 -1.6384 -1.1342 6 6 1.7975 -0.1754 -2.4795 7 7 1.2911 1.0331 -2.5926 8 14 2.1987 -1.1670 -4.0108 9 1 0.9793 -1.8762 -4.4749 10 1 2.6778 -0.2547 -5.0800 11 1 3.2580 -2.1588 -3.6949 12 7 2.0197 -0.6926 1.1993 13 6 1.5283 -2.0762 1.2457 14 6 1.6488 0.0389 2.4181 15 6 2.4916 1.3114 2.5255 16 1 2.2825 1.9675 1.6806 17 6 2.1767 2.0392 3.8455 18 6 3.5240 2.1067 4.6007 19 6 4.5660 1.9479 3.4652 20 7 3.9287 0.9629 2.5543 21 1 -0.3634 0.4881 -0.9043 22 1 -0.3634 -1.0272 0.0294 23 1 -0.3633 0.5391 0.8749 24 1 1.1262 1.4095 -3.4713 25 1 0.4406 -2.0733 1.3155 26 1 1.8329 -2.6005 0.3400 27 1 1.9469 -2.5814 2.1162 28 1 0.5927 0.3053 2.3747 29 1 1.8293 -0.5910 3.2890 30 1 1.8052 3.0440 3.6441 31 1 1.4452 1.4748 4.4236 32 1 3.6394 3.0696 5.0983 33 1 3.6062 1.2889 5.3167 34 1 4.7257 2.8973 2.9540 35 1 5.5064 1.5607 3.8574 36 1 4.0656 0.0205 2.8879 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300058017.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:23 Heat of formation + Delta-G solvation = -14.697361 kcal Electronic energy + Delta-G solvation = -14976.043846 eV Core-core repulsion = 12687.093595 eV Total energy + Delta-G solvation = -2288.950251 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.07731 -38.12106 -34.63967 -31.49493 -30.72660 -30.31881 -27.35871 -26.67442 -24.75006 -22.51946 -21.39647 -20.47407 -18.22599 -17.09574 -16.69811 -16.44136 -15.92651 -15.37956 -14.94677 -14.63950 -14.49111 -14.10624 -13.54310 -13.16171 -12.91070 -12.68143 -12.63841 -12.56114 -12.34354 -12.23605 -12.10939 -11.90534 -11.77811 -11.49057 -11.24942 -10.86594 -10.39791 -9.28623 -8.70860 -8.09586 -6.14824 1.42322 1.43251 1.54172 2.45827 3.21009 3.27724 3.69272 3.91779 3.92872 4.14686 4.31747 4.49511 4.59791 4.63986 4.70424 4.72325 4.78367 4.85502 4.93633 4.98836 5.06066 5.12066 5.13729 5.21933 5.26988 5.40973 5.57483 5.73798 5.77408 6.10617 6.26226 6.58529 6.72163 6.84927 6.99247 7.52255 8.99969 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040439 B = 0.008235 C = 0.007890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.242179 B = 3399.099879 C = 3547.923413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.220 3.780 3 H 0.010 0.990 4 C -0.511 4.511 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.924 5.924 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.269 1.269 12 N -0.534 5.534 13 C 0.036 3.964 14 C 0.052 3.948 15 C 0.084 3.916 16 H 0.041 0.959 17 C -0.144 4.144 18 C -0.144 4.144 19 C 0.037 3.963 20 N -0.672 5.672 21 H 0.040 0.960 22 H 0.038 0.962 23 H 0.029 0.971 24 H 0.259 0.741 25 H 0.015 0.985 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.820 -0.647 13.495 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.113 3.887 3 H 0.028 0.972 4 C -0.550 4.550 5 H 0.075 0.925 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.193 1.193 12 N -0.257 5.257 13 C -0.112 4.112 14 C -0.077 4.077 15 C -0.027 4.027 16 H 0.059 0.941 17 C -0.184 4.184 18 C -0.183 4.183 19 C -0.093 4.093 20 N -0.301 5.301 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.048 0.952 24 H 0.068 0.932 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.047 0.953 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.495 -0.251 12.680 12.925 hybrid contribution -1.278 -0.365 -0.383 1.383 sum 1.217 -0.616 12.296 12.372 Atomic orbital electron populations 1.22177 1.01105 0.99028 0.99135 1.18955 0.88985 0.93528 0.87270 0.97187 1.21427 1.34519 1.07803 0.91220 0.92544 1.25692 0.95694 0.95581 1.01893 1.70101 1.46618 1.15592 1.24058 0.85597 0.78387 0.78673 0.79301 1.20179 1.21251 1.19312 1.62194 1.59435 1.02194 1.01876 1.22247 0.96891 0.90400 1.01705 1.22418 0.96745 0.95079 0.93450 1.22175 0.88610 0.95397 0.96496 0.94053 1.22836 0.98921 1.00826 0.95786 1.23049 0.94022 1.03163 0.98095 1.23208 0.97757 0.96762 0.91546 1.62544 1.09361 1.06551 1.51624 0.94107 0.94304 0.95162 0.93214 0.96640 0.92684 0.90903 0.95261 0.89995 0.91625 0.90366 0.89706 0.90448 0.91760 0.89432 0.84166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.56 8.39 71.98 0.60 -6.96 16 2 C 0.22 11.38 2.10 44.17 0.09 11.47 16 3 H 0.01 0.61 6.55 -2.38 -0.02 0.59 16 4 C -0.51 -28.93 7.94 25.60 0.20 -28.73 16 5 H 0.06 3.19 6.56 -2.91 -0.02 3.17 16 6 C 0.01 0.55 5.20 84.66 0.44 0.99 16 7 N -0.92 -55.31 12.13 21.45 0.26 -55.05 16 8 Si 0.95 45.07 29.55 68.60 2.03 47.10 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 N -0.53 -22.69 4.52 -901.48 -4.08 -26.77 16 13 C 0.04 1.35 8.80 127.69 1.12 2.47 16 14 C 0.05 1.80 3.92 86.31 0.34 2.14 16 15 C 0.08 2.88 3.35 45.06 0.15 3.03 16 16 H 0.04 1.79 6.81 -2.39 -0.02 1.77 16 17 C -0.14 -3.67 6.57 31.47 0.21 -3.46 16 18 C -0.14 -3.00 7.06 31.80 0.22 -2.78 16 19 C 0.04 0.93 7.55 86.65 0.65 1.58 16 20 N -0.67 -22.39 7.22 -480.20 -3.47 -25.86 16 21 H 0.04 2.20 6.85 -2.39 -0.02 2.19 16 22 H 0.04 1.79 6.36 -2.39 -0.02 1.77 16 23 H 0.03 1.32 6.37 -2.39 -0.02 1.30 16 24 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 25 H 0.02 0.56 6.41 -2.39 -0.02 0.55 16 26 H 0.05 2.28 6.34 -2.39 -0.02 2.26 16 27 H 0.07 2.24 8.06 -2.39 -0.02 2.22 16 28 H 0.03 1.06 6.00 -2.39 -0.01 1.04 16 29 H 0.08 2.39 7.94 -2.39 -0.02 2.37 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 1.77 7.69 -2.39 -0.02 1.75 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 34 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.34 10.72 8.40 -89.70 -0.75 9.97 16 Total: -1.00 -63.12 274.99 -0.92 -64.04 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.30 Total: 16.78 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 4.04 Total: -20.23 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -7.28 Total: -107.68 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -63.12 -0.92 -64.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300058017.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.338 kcal (2) G-P(sol) polarization free energy of solvation -63.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds