Wall clock time and date at job start Mon Mar 30 2020 02:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.53413 * 2 1 4 4 C 1.53045 * 109.56083 * 239.92517 * 2 1 3 5 5 N 1.46840 * 109.58058 * 180.94229 * 4 2 1 6 6 C 1.46850 * 111.19570 * 61.71333 * 5 4 2 7 7 C 1.53036 * 109.52238 * 298.25892 * 6 5 4 8 8 C 1.53121 * 109.28019 * 59.18030 * 7 6 5 9 9 H 1.09000 * 109.52252 * 62.31139 * 8 7 6 10 10 N 1.46904 * 109.52216 * 182.44158 * 8 7 6 11 11 C 1.46902 * 111.00203 * 58.82674 * 10 8 7 12 12 C 1.46895 * 110.99781 * 294.87029 * 10 8 7 13 13 C 1.50706 * 109.47182 * 190.00182 * 12 10 8 14 14 H 1.08005 * 119.99758 * 0.02562 * 13 12 10 15 15 C 1.37871 * 120.00102 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 H 1.08998 * 109.47118 * 299.90215 * 1 2 3 22 22 H 1.09003 * 109.47355 * 59.90794 * 1 2 3 23 23 H 1.09004 * 109.47227 * 179.90562 * 1 2 3 24 24 H 1.09000 * 109.45624 * 60.89371 * 4 2 1 25 25 H 1.09000 * 109.40366 * 300.96266 * 4 2 1 26 26 H 1.00895 * 111.00533 * 185.80934 * 5 4 2 27 27 H 1.09005 * 109.46330 * 178.24373 * 6 5 4 28 28 H 1.09001 * 109.46298 * 58.27418 * 6 5 4 29 29 H 1.09004 * 109.50463 * 299.23624 * 7 6 5 30 30 H 1.08999 * 109.53686 * 179.14253 * 7 6 5 31 31 H 1.09002 * 109.46967 * 296.04616 * 11 10 8 32 32 H 1.08996 * 109.46867 * 56.04646 * 11 10 8 33 33 H 1.08993 * 109.46727 * 176.04565 * 11 10 8 34 34 H 1.09001 * 109.47613 * 70.00528 * 12 10 8 35 35 H 1.09006 * 109.47521 * 310.00146 * 12 10 8 36 36 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0423 -0.7227 -1.2480 5 7 3.5105 -0.7427 -1.2371 6 6 4.0229 -1.4744 -0.0715 7 6 3.5711 -0.7733 1.2116 8 6 2.0411 -0.7238 1.2488 9 1 1.6443 -1.7388 1.2696 10 7 1.6024 -0.0003 2.4497 11 6 2.1406 1.3665 2.4669 12 6 1.9765 -0.7288 3.6692 13 6 1.3048 -0.0940 4.8596 14 1 0.6638 0.7646 4.7236 15 6 1.5086 -0.6092 6.1221 16 7 2.2896 -1.6543 6.2876 17 14 0.6766 0.1782 7.5976 18 1 1.0547 -0.5583 8.8304 19 1 1.1102 1.5938 7.7135 20 1 -0.7970 0.1246 7.4219 21 1 -0.3633 0.5123 0.8908 22 1 -0.3634 0.5153 -0.8892 23 1 -0.3634 -1.0277 -0.0017 24 1 1.6928 -0.2009 -2.1389 25 1 1.6652 -1.7453 -1.2547 26 1 3.8734 -1.1299 -2.0952 27 1 5.1121 -1.4986 -0.1079 28 1 3.6366 -2.4935 -0.0839 29 1 3.9686 0.2415 1.2312 30 1 3.9385 -1.3247 2.0770 31 1 3.2280 1.3280 2.5313 32 1 1.8488 1.8833 1.5527 33 1 1.7442 1.9021 3.3294 34 1 3.0581 -0.6895 3.7986 35 1 1.6583 -1.7679 3.5838 36 1 2.7220 -2.0629 5.5214 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306218822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:39 Heat of formation + Delta-G solvation = -28.942060 kcal Electronic energy + Delta-G solvation = -15056.635019 eV Core-core repulsion = 12767.067072 eV Total energy + Delta-G solvation = -2289.567948 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.69566 -37.33622 -35.00211 -33.71585 -31.52776 -28.81741 -27.63355 -26.53472 -24.78000 -22.81309 -22.35631 -20.20307 -18.87378 -17.56543 -16.68860 -16.04446 -15.80214 -15.65410 -15.43061 -14.76725 -14.57403 -14.40103 -13.71201 -13.60006 -13.25160 -12.85650 -12.78139 -12.69314 -12.60856 -12.36032 -12.07630 -11.93532 -11.71757 -11.55387 -11.18749 -10.73206 -10.57621 -9.46633 -9.00211 -8.68536 -6.39411 1.52259 1.61122 1.80601 2.55245 3.12464 3.20725 3.24030 3.70760 3.86663 4.03968 4.10328 4.32204 4.36426 4.50194 4.56806 4.58267 4.64640 4.75104 4.77241 4.85537 4.87128 4.94555 4.98742 5.12452 5.13497 5.22727 5.39956 5.49465 5.79151 5.98189 5.99819 6.38715 6.41874 6.52925 6.65842 7.41382 8.69369 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048545 B = 0.007842 C = 0.007243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.645856 B = 3569.702033 C = 3864.670357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.075 4.075 3 H 0.074 0.926 4 C 0.068 3.932 5 N -0.692 5.692 6 C 0.071 3.929 7 C -0.147 4.147 8 C 0.085 3.915 9 H 0.051 0.949 10 N -0.531 5.531 11 C 0.042 3.958 12 C 0.199 3.801 13 C -0.600 4.600 14 H 0.055 0.945 15 C -0.039 4.039 16 N -0.938 5.938 17 Si 1.122 2.878 18 H -0.283 1.283 19 H -0.269 1.269 20 H -0.270 1.270 21 H 0.048 0.952 22 H 0.073 0.927 23 H 0.045 0.955 24 H 0.099 0.901 25 H 0.030 0.970 26 H 0.357 0.643 27 H 0.085 0.915 28 H 0.029 0.971 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.010 0.990 32 H 0.081 0.919 33 H 0.052 0.948 34 H -0.040 1.040 35 H -0.011 1.011 36 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 2.904 -15.129 15.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.094 4.094 3 H 0.092 0.908 4 C -0.062 4.062 5 N -0.324 5.324 6 C -0.059 4.059 7 C -0.186 4.186 8 C -0.024 4.024 9 H 0.069 0.931 10 N -0.253 5.253 11 C -0.106 4.106 12 C 0.072 3.928 13 C -0.638 4.638 14 H 0.073 0.927 15 C -0.236 4.236 16 N -0.576 5.576 17 Si 0.942 3.058 18 H -0.209 1.209 19 H -0.194 1.194 20 H -0.195 1.195 21 H 0.067 0.933 22 H 0.092 0.908 23 H 0.064 0.936 24 H 0.117 0.883 25 H 0.048 0.952 26 H 0.177 0.823 27 H 0.103 0.897 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.028 0.972 32 H 0.099 0.901 33 H 0.071 0.929 34 H -0.023 1.023 35 H 0.007 0.993 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.534 3.442 -13.216 13.668 hybrid contribution 1.153 -1.310 -1.488 2.294 sum 0.620 2.132 -14.704 14.871 Atomic orbital electron populations 1.21608 0.93886 1.01484 1.01922 1.21182 0.96357 0.99608 0.92298 0.90801 1.21981 0.87290 0.98790 0.98111 1.60199 1.08483 1.58331 1.05426 1.21740 1.00130 0.94190 0.89841 1.22188 0.97845 1.01170 0.97422 1.21869 0.92488 0.96888 0.91147 0.93108 1.62143 1.58824 1.02812 1.01509 1.22216 0.96188 0.90440 1.01796 1.19456 0.91844 0.92631 0.88856 1.22332 1.31176 1.16830 0.93424 0.92699 1.27448 0.96300 0.95569 1.04272 1.70932 1.30560 1.22349 1.33753 0.82880 0.75700 0.75351 0.71839 1.20867 1.19374 1.19499 0.93282 0.90842 0.93603 0.88312 0.95186 0.82349 0.89692 0.95322 0.91729 0.94374 0.97178 0.90094 0.92903 1.02272 0.99280 0.93928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 9.07 71.98 0.65 -2.93 16 2 C -0.08 -2.16 2.12 -10.74 -0.02 -2.19 16 3 H 0.07 2.19 6.23 -2.39 -0.01 2.17 16 4 C 0.07 1.53 5.83 86.33 0.50 2.04 16 5 N -0.69 -15.62 6.85 -513.99 -3.52 -19.14 16 6 C 0.07 1.88 6.55 86.32 0.57 2.44 16 7 C -0.15 -5.11 4.69 30.65 0.14 -4.97 16 8 C 0.09 3.14 1.71 45.00 0.08 3.21 16 9 H 0.05 2.03 8.04 -2.39 -0.02 2.01 16 10 N -0.53 -23.66 4.10 -901.12 -3.69 -27.36 16 11 C 0.04 1.69 8.56 127.69 1.09 2.78 16 12 C 0.20 10.89 3.48 85.56 0.30 11.19 16 13 C -0.60 -35.28 8.51 25.60 0.22 -35.06 16 14 H 0.05 3.19 7.10 -2.91 -0.02 3.17 16 15 C -0.04 -2.31 5.46 84.65 0.46 -1.84 16 16 N -0.94 -59.41 13.65 21.45 0.29 -59.12 16 17 Si 1.12 51.40 29.90 68.60 2.05 53.45 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 H 0.05 1.58 7.68 -2.39 -0.02 1.57 16 22 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 24 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.36 5.99 8.90 -89.70 -0.80 5.19 16 27 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 2.32 6.35 -2.38 -0.02 2.30 16 30 H 0.04 1.52 6.89 -2.39 -0.02 1.51 16 31 H 0.01 0.40 6.46 -2.39 -0.02 0.39 16 32 H 0.08 2.75 6.08 -2.39 -0.01 2.74 16 33 H 0.05 2.31 6.86 -2.39 -0.02 2.29 16 34 H -0.04 -2.35 6.87 -2.39 -0.02 -2.37 16 35 H -0.01 -0.64 7.87 -2.38 -0.02 -0.66 16 36 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 Total: -1.00 -66.92 273.19 -0.53 -67.45 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.35 Total: 10.04 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 3.99 Total: -25.33 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -6.92 Total: -105.61 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.05 Total: 53.45 kcal Total: -66.92 -0.53 -67.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306218822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.508 kcal (2) G-P(sol) polarization free energy of solvation -66.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds