Wall clock time and date at job start Mon Mar 30 2020 02:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.50352 * 2 1 4 4 C 1.53038 * 109.53381 * 120.09844 * 2 1 3 5 5 N 1.46854 * 109.51956 * 179.14116 * 4 2 1 6 6 C 1.46845 * 111.19629 * 298.25673 * 5 4 2 7 7 C 1.53038 * 109.52589 * 61.74331 * 6 5 4 8 8 C 1.53112 * 109.50326 * 239.92050 * 2 1 3 9 9 H 1.08996 * 109.52662 * 302.27398 * 8 2 1 10 10 N 1.46908 * 109.52252 * 62.39777 * 8 2 1 11 11 C 1.46903 * 111.00039 * 192.89908 * 10 8 2 12 12 C 1.46897 * 111.00093 * 68.94156 * 10 8 2 13 13 C 1.50697 * 109.46926 * 189.99949 * 12 10 8 14 14 H 1.07996 * 119.99959 * 0.02562 * 13 12 10 15 15 C 1.37881 * 119.99641 * 180.02562 * 13 12 10 16 16 N 1.31519 * 120.00159 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99743 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47570 * 89.99939 * 17 15 13 19 19 H 1.48508 * 109.46949 * 209.99924 * 17 15 13 20 20 H 1.48498 * 109.47167 * 329.99251 * 17 15 13 21 21 H 1.09002 * 109.47422 * 175.31145 * 1 2 3 22 22 H 1.09006 * 109.46988 * 295.30552 * 1 2 3 23 23 H 1.08996 * 109.47154 * 55.30681 * 1 2 3 24 24 H 1.08999 * 109.46296 * 299.15304 * 4 2 1 25 25 H 1.09003 * 109.46635 * 59.12519 * 4 2 1 26 26 H 1.00906 * 110.99586 * 174.16082 * 5 4 2 27 27 H 1.09000 * 109.46205 * 181.75734 * 6 5 4 28 28 H 1.08998 * 109.46151 * 301.72465 * 6 5 4 29 29 H 1.08995 * 109.50638 * 180.87544 * 7 6 5 30 30 H 1.09003 * 109.49924 * 60.76168 * 7 6 5 31 31 H 1.09004 * 109.47390 * 54.44534 * 11 10 8 32 32 H 1.08995 * 109.47245 * 174.44907 * 11 10 8 33 33 H 1.09003 * 109.46698 * 294.45010 * 11 10 8 34 34 H 1.08997 * 109.47168 * 310.00431 * 12 10 8 35 35 H 1.08996 * 109.47173 * 69.99955 * 12 10 8 36 36 H 0.96993 * 119.99765 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0417 -0.7233 1.2478 5 7 3.5101 -0.7411 1.2371 6 6 4.0238 -1.4715 0.0714 7 6 3.5712 -0.7707 -1.2115 8 6 2.0412 -0.7234 -1.2489 9 1 1.6458 -1.7389 -1.2692 10 7 1.6004 -0.0009 -2.4497 11 6 1.8024 -0.8133 -3.6568 12 6 2.2845 1.2939 -2.5659 13 6 1.6384 2.1071 -3.6578 14 1 0.8029 1.7028 -4.2098 15 6 2.1141 3.3674 -3.9519 16 7 3.1319 3.8596 -3.2799 17 14 1.3128 4.3758 -5.3049 18 1 0.2164 5.1949 -4.7286 19 1 2.3258 5.2690 -5.9225 20 1 0.7594 3.4653 -6.3392 21 1 -0.3634 -1.0242 -0.0840 22 1 -0.3633 0.4393 0.9291 23 1 -0.3633 0.5849 -0.8449 24 1 1.6913 -0.2024 2.1389 25 1 1.6661 -1.7466 1.2542 26 1 3.8732 -1.1282 2.0953 27 1 5.1129 -1.4941 0.1080 28 1 3.6389 -2.4913 0.0834 29 1 3.9396 -1.3218 -2.0767 30 1 3.9673 0.2447 -1.2306 31 1 1.3093 -1.7775 -3.5327 32 1 1.3785 -0.2965 -4.5177 33 1 2.8695 -0.9689 -3.8156 34 1 2.2095 1.8306 -1.6202 35 1 3.3344 1.1296 -2.8080 36 1 3.4662 4.7463 -3.4866 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306218823.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:41 Heat of formation + Delta-G solvation = -25.095232 kcal Electronic energy + Delta-G solvation = -15136.675067 eV Core-core repulsion = 12847.273931 eV Total energy + Delta-G solvation = -2289.401137 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.52919 -37.13942 -34.66790 -33.70622 -31.50263 -29.27860 -27.40871 -26.39258 -24.73304 -22.73306 -22.19484 -20.04522 -18.48433 -17.37839 -16.63859 -16.15197 -15.76611 -15.60069 -15.35055 -14.60716 -14.35248 -14.09690 -13.97332 -13.40566 -13.09454 -12.87509 -12.76372 -12.64741 -12.60958 -12.34158 -12.13366 -11.79052 -11.57558 -11.45378 -11.30969 -10.94823 -10.56115 -9.33480 -8.85307 -8.17479 -6.27505 1.39799 1.41633 1.52395 2.40917 3.14119 3.31421 3.38427 3.85113 3.98285 4.13576 4.21953 4.45791 4.52009 4.56826 4.64040 4.66929 4.75939 4.80941 4.90111 4.96584 5.05721 5.09761 5.17349 5.25508 5.32901 5.44713 5.55281 5.57163 5.68092 6.10879 6.12011 6.41509 6.61936 6.73466 6.90555 7.41882 8.93108 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038910 B = 0.008519 C = 0.008451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.436991 B = 3285.928989 C = 3312.445432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 H 0.038 0.962 4 C 0.073 3.927 5 N -0.706 5.706 6 C 0.073 3.927 7 C -0.149 4.149 8 C 0.090 3.910 9 H 0.083 0.917 10 N -0.540 5.540 11 C 0.041 3.959 12 C 0.218 3.782 13 C -0.524 4.524 14 H 0.061 0.939 15 C 0.000 4.000 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.264 1.264 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.041 0.959 24 H 0.084 0.916 25 H 0.047 0.953 26 H 0.356 0.644 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.008 0.992 34 H 0.002 0.998 35 H -0.039 1.039 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.841 -11.773 7.160 13.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.101 4.101 3 H 0.057 0.943 4 C -0.056 4.056 5 N -0.340 5.340 6 C -0.057 4.057 7 C -0.188 4.188 8 C -0.019 4.019 9 H 0.101 0.899 10 N -0.262 5.262 11 C -0.108 4.108 12 C 0.091 3.909 13 C -0.563 4.563 14 H 0.079 0.921 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.188 1.188 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.060 0.940 24 H 0.103 0.897 25 H 0.065 0.935 26 H 0.175 0.825 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.027 0.973 34 H 0.020 0.980 35 H -0.021 1.021 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.194 -10.929 6.904 13.112 hybrid contribution 0.749 0.020 -0.652 0.993 sum -1.445 -10.909 6.252 12.656 Atomic orbital electron populations 1.21532 0.93672 1.01860 1.01150 1.21144 0.96623 0.98623 0.93751 0.94333 1.21920 0.87130 0.99055 0.97511 1.60113 1.08759 1.59290 1.05795 1.21758 0.99833 0.94567 0.89500 1.22217 0.98270 1.00281 0.98039 1.21837 0.92159 0.97098 0.90807 0.89850 1.62218 1.57604 1.04098 1.02296 1.22186 0.98078 0.97079 0.93420 1.19265 0.90191 0.86178 0.95225 1.21553 1.15815 1.00680 1.18226 0.92108 1.25915 0.95636 0.99010 0.99227 1.70109 1.26692 1.17884 1.42813 0.85418 0.78049 0.78365 0.78987 1.19923 1.20826 1.18830 0.91785 0.92197 0.93956 0.89734 0.93512 0.82465 0.90325 0.93561 0.92245 0.94414 0.90426 0.92715 0.97325 0.97972 1.02126 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.89 9.00 71.98 0.65 -3.24 16 2 C -0.08 -2.84 2.30 -10.74 -0.02 -2.87 16 3 H 0.04 1.70 6.39 -2.39 -0.02 1.68 16 4 C 0.07 1.93 5.84 86.32 0.50 2.43 16 5 N -0.71 -18.96 6.85 -513.99 -3.52 -22.48 16 6 C 0.07 1.98 6.55 86.33 0.57 2.55 16 7 C -0.15 -5.34 4.62 30.65 0.14 -5.20 16 8 C 0.09 3.25 1.66 44.99 0.07 3.33 16 9 H 0.08 2.64 7.94 -2.39 -0.02 2.62 16 10 N -0.54 -23.75 4.12 -901.16 -3.71 -27.46 16 11 C 0.04 1.60 9.07 127.69 1.16 2.76 16 12 C 0.22 11.94 3.57 85.56 0.31 12.25 16 13 C -0.52 -30.63 8.54 25.60 0.22 -30.41 16 14 H 0.06 3.48 7.10 -2.91 -0.02 3.46 16 15 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 16 N -0.93 -58.09 13.29 21.45 0.28 -57.80 16 17 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 18 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 21 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 23 H 0.04 1.59 7.82 -2.39 -0.02 1.57 16 24 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.36 7.19 8.90 -89.69 -0.80 6.39 16 27 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 2.07 7.05 -2.39 -0.02 2.06 16 30 H 0.04 1.69 6.41 -2.39 -0.02 1.68 16 31 H 0.08 2.47 7.99 -2.39 -0.02 2.45 16 32 H 0.05 2.31 6.90 -2.39 -0.02 2.29 16 33 H 0.01 0.33 7.03 -2.39 -0.02 0.31 16 34 H 0.00 0.14 6.20 -2.39 -0.01 0.12 16 35 H -0.04 -2.34 6.78 -2.39 -0.02 -2.36 16 36 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -66.66 275.39 -0.62 -67.28 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.25 Total: 10.89 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 4.05 Total: -17.96 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -6.95 Total: -107.75 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -66.66 -0.62 -67.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306218823.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.181 kcal (2) G-P(sol) polarization free energy of solvation -66.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds