Wall clock time and date at job start Mon Mar 30 2020 02:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.53756 * 2 1 4 4 C 1.53031 * 109.50762 * 120.09924 * 2 1 3 5 5 N 1.46847 * 109.52094 * 60.75907 * 4 2 1 6 6 C 1.46841 * 111.20190 * 61.74607 * 5 4 2 7 7 C 1.53039 * 109.52261 * 298.26071 * 6 5 4 8 8 C 1.53117 * 109.28085 * 59.17439 * 7 6 5 9 9 H 1.08999 * 109.52400 * 62.31571 * 8 7 6 10 10 N 1.46895 * 109.52407 * 182.44782 * 8 7 6 11 11 C 1.46905 * 110.99890 * 309.59643 * 10 8 7 12 12 C 1.46909 * 111.00030 * 185.64934 * 10 8 7 13 13 C 1.50699 * 109.46912 * 189.99611 * 12 10 8 14 14 H 1.07997 * 120.00346 * 0.02562 * 13 12 10 15 15 C 1.37880 * 119.99856 * 179.97438 * 13 12 10 16 16 N 1.31519 * 120.00118 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99969 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47114 * 89.99627 * 17 15 13 19 19 H 1.48494 * 109.47260 * 209.99958 * 17 15 13 20 20 H 1.48502 * 109.46793 * 330.00078 * 17 15 13 21 21 H 1.09005 * 109.46842 * 305.55326 * 1 2 3 22 22 H 1.08998 * 109.47181 * 65.54727 * 1 2 3 23 23 H 1.09000 * 109.47226 * 185.55079 * 1 2 3 24 24 H 1.08996 * 109.46349 * 300.74633 * 4 2 1 25 25 H 1.09003 * 109.46669 * 180.77428 * 4 2 1 26 26 H 1.00906 * 110.99898 * 185.84385 * 5 4 2 27 27 H 1.09006 * 109.46517 * 58.26667 * 6 5 4 28 28 H 1.08994 * 109.47097 * 178.25142 * 6 5 4 29 29 H 1.09002 * 109.50728 * 179.11879 * 7 6 5 30 30 H 1.09003 * 109.50133 * 299.23517 * 7 6 5 31 31 H 1.08995 * 109.47070 * 66.15260 * 11 10 8 32 32 H 1.09002 * 109.47432 * 186.15149 * 11 10 8 33 33 H 1.09001 * 109.47214 * 306.15361 * 11 10 8 34 34 H 1.09000 * 109.46609 * 309.99002 * 12 10 8 35 35 H 1.08999 * 109.47279 * 69.99471 * 12 10 8 36 36 H 0.96996 * 119.99930 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0410 -0.7234 1.2480 5 7 1.5676 -2.1134 1.2378 6 6 2.0845 -2.8420 0.0724 7 6 1.5749 -2.1818 -1.2108 8 6 2.0412 -0.7238 -1.2488 9 1 3.1304 -0.6901 -1.2702 10 7 1.5060 -0.0684 -2.4496 11 6 1.7792 -0.8676 -3.6516 12 6 2.0414 1.2925 -2.5894 13 6 1.2939 2.0168 -3.6792 14 1 0.5002 1.5165 -4.2141 15 6 1.6225 3.3187 -3.9927 16 7 0.9698 3.9510 -4.9434 17 14 2.9948 4.1843 -3.0670 18 1 4.2852 3.9527 -3.7645 19 1 2.7146 5.6417 -3.0155 20 1 3.0756 3.6466 -1.6851 21 1 -0.3633 0.5976 0.8361 22 1 -0.3633 0.4254 -0.9355 23 1 -0.3634 -1.0228 0.0994 24 1 1.6670 -0.2189 2.1389 25 1 3.1309 -0.7110 1.2543 26 1 1.8112 -2.5847 2.0961 27 1 3.1743 -2.8196 0.0841 28 1 1.7421 -3.8761 0.1092 29 1 1.9715 -2.7133 -2.0759 30 1 0.4856 -2.2161 -1.2298 31 1 1.2234 -1.8037 -3.5995 32 1 1.4707 -0.3105 -4.5362 33 1 2.8464 -1.0816 -3.7108 34 1 1.9211 1.8287 -1.6481 35 1 3.0995 1.2421 -2.8463 36 1 1.2012 4.8667 -5.1641 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306218824.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:44 Heat of formation + Delta-G solvation = 4.225198 kcal Electronic energy + Delta-G solvation = -15150.966509 eV Core-core repulsion = 12862.836802 eV Total energy + Delta-G solvation = -2288.129707 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.27694 -35.81388 -32.56225 -31.99955 -30.53488 -27.73174 -26.20279 -25.11812 -22.72241 -21.73460 -20.25967 -18.09662 -17.10700 -16.43770 -14.85096 -14.50957 -14.38656 -14.22450 -14.00905 -13.46732 -12.76760 -12.56093 -12.45488 -12.16871 -11.60362 -11.42317 -11.21815 -11.11328 -10.84911 -10.69398 -10.47134 -10.36799 -9.96274 -9.74395 -9.56704 -9.19351 -8.54761 -8.35652 -7.29345 -6.02993 -3.99344 3.28668 3.36456 3.38564 4.29307 4.43676 4.73529 5.03598 5.10607 5.28932 5.38336 5.45605 5.52900 5.74456 5.81673 5.89147 5.93247 6.09501 6.10813 6.22051 6.28329 6.33830 6.56601 6.65251 6.75672 6.83988 6.93047 7.02958 7.06496 7.17134 7.44005 7.66094 7.97804 8.12812 8.70098 9.06286 9.59371 11.10259 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041647 B = 0.009071 C = 0.008346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.150630 B = 3086.114012 C = 3354.191359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.082 4.082 3 H 0.072 0.928 4 C 0.063 3.937 5 N -0.685 5.685 6 C 0.061 3.939 7 C -0.113 4.113 8 C 0.087 3.913 9 H 0.022 0.978 10 N -0.521 5.521 11 C 0.033 3.967 12 C 0.160 3.840 13 C -0.506 4.506 14 H 0.081 0.919 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.874 3.126 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.267 1.267 21 H 0.034 0.966 22 H 0.073 0.927 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.023 0.977 26 H 0.336 0.664 27 H 0.023 0.977 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.007 0.993 34 H 0.031 0.969 35 H -0.021 1.021 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.245 -11.269 10.838 15.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.101 4.101 3 H 0.090 0.910 4 C -0.066 4.066 5 N -0.315 5.315 6 C -0.069 4.069 7 C -0.151 4.151 8 C -0.022 4.022 9 H 0.040 0.960 10 N -0.245 5.245 11 C -0.115 4.115 12 C 0.033 3.967 13 C -0.544 4.544 14 H 0.099 0.901 15 C -0.133 4.133 16 N -0.541 5.541 17 Si 0.701 3.299 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.192 1.192 21 H 0.053 0.947 22 H 0.092 0.908 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.041 0.959 26 H 0.153 0.847 27 H 0.041 0.959 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.025 0.975 34 H 0.049 0.951 35 H -0.003 1.003 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.129 -10.888 10.477 15.259 hybrid contribution 2.726 0.473 0.571 2.825 sum 4.855 -10.415 11.048 15.941 Atomic orbital electron populations 1.21604 0.93616 1.01605 1.01698 1.21182 0.98163 0.98429 0.92312 0.91025 1.21986 0.96404 0.89136 0.99099 1.60250 1.63635 1.02802 1.04861 1.21913 0.96382 0.97241 0.91353 1.21744 1.02761 0.94948 0.95662 1.21613 0.95163 0.93465 0.91953 0.96043 1.61990 1.58637 1.03223 1.00651 1.22295 0.97005 0.97315 0.94890 1.20222 0.92739 0.85812 0.97883 1.21050 1.18887 0.97372 1.17077 0.90093 1.24894 0.96250 0.97236 0.94969 1.69894 1.41370 1.12098 1.30689 0.86887 0.82859 0.79116 0.81029 1.20481 1.21154 1.19230 0.94661 0.90782 0.92138 0.90926 0.95885 0.84717 0.95851 0.91073 0.91894 0.89970 0.93030 0.90114 0.97480 0.95080 1.00328 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.58 37.16 0.32 -1.85 16 2 C -0.08 -1.37 2.50 -90.54 -0.23 -1.60 16 3 H 0.07 1.32 6.48 -51.92 -0.34 0.99 16 4 C 0.06 0.85 5.99 -3.84 -0.02 0.83 16 5 N -0.68 -8.33 6.03 -113.82 -0.69 -9.01 16 6 C 0.06 0.74 6.55 -3.84 -0.03 0.72 16 7 C -0.11 -1.67 4.37 -26.65 -0.12 -1.78 16 8 C 0.09 1.54 1.70 -67.59 -0.12 1.43 16 9 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 10 N -0.52 -11.00 3.67 -236.17 -0.87 -11.87 16 11 C 0.03 0.65 8.61 60.07 0.52 1.17 16 12 C 0.16 3.93 3.65 -4.97 -0.02 3.91 16 13 C -0.51 -14.46 8.92 -34.44 -0.31 -14.76 16 14 H 0.08 2.51 7.43 -52.49 -0.39 2.12 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 17 Si 0.87 21.80 27.47 -169.99 -4.67 17.13 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 21 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.07 1.47 7.37 -51.93 -0.38 1.08 16 23 H 0.06 0.98 6.14 -51.93 -0.32 0.66 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.34 3.26 8.90 -39.29 -0.35 2.91 16 27 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.88 6.62 -51.93 -0.34 0.54 16 30 H 0.08 1.29 6.71 -51.93 -0.35 0.94 16 31 H 0.05 0.87 6.65 -51.93 -0.35 0.52 16 32 H 0.08 1.76 6.65 -51.93 -0.35 1.41 16 33 H 0.01 0.13 8.12 -51.93 -0.42 -0.30 16 34 H 0.03 0.78 5.19 -51.93 -0.27 0.51 16 35 H -0.02 -0.53 7.55 -51.93 -0.39 -0.92 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 269.17 15.07 4.06 4.06 Total: -1.00 -30.14 269.17 -7.43 -37.57 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.95 Total: -0.79 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -0.09 Total: -10.06 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.78 Total: -47.91 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.14 -7.43 -37.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306218824.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.799 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds