Wall clock time and date at job start Mon Mar 30 2020 02:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.53809 * 2 1 4 4 C 1.53036 * 109.50297 * 239.89448 * 2 1 3 5 5 N 1.46839 * 109.51722 * 299.23379 * 4 2 1 6 6 C 1.46847 * 111.20310 * 298.26638 * 5 4 2 7 7 C 1.53038 * 109.52378 * 61.73726 * 6 5 4 8 8 C 1.53102 * 109.50341 * 120.07882 * 2 1 3 9 9 H 1.08997 * 109.52613 * 182.19152 * 8 2 1 10 10 N 1.46900 * 109.57606 * 302.35246 * 8 2 1 11 11 C 1.46905 * 110.99912 * 171.04091 * 10 8 2 12 12 C 1.46902 * 110.99950 * 294.99050 * 10 8 2 13 13 C 1.50696 * 109.46979 * 170.00169 * 12 10 8 14 14 H 1.08005 * 120.00496 * 0.02562 * 13 12 10 15 15 C 1.37879 * 120.00379 * 179.97438 * 13 12 10 16 16 N 1.31507 * 120.00678 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99597 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47056 * 89.99623 * 17 15 13 19 19 H 1.48495 * 109.47053 * 209.99958 * 17 15 13 20 20 H 1.48499 * 109.46915 * 330.00093 * 17 15 13 21 21 H 1.08993 * 109.46977 * 181.85596 * 1 2 3 22 22 H 1.08998 * 109.46773 * 301.85541 * 1 2 3 23 23 H 1.09005 * 109.46725 * 61.85404 * 1 2 3 24 24 H 1.08999 * 109.46147 * 179.22558 * 4 2 1 25 25 H 1.09002 * 109.46115 * 59.25350 * 4 2 1 26 26 H 1.00907 * 110.99733 * 62.36170 * 5 4 2 27 27 H 1.09000 * 109.46675 * 181.75837 * 6 5 4 28 28 H 1.09010 * 109.45513 * 301.73637 * 6 5 4 29 29 H 1.08994 * 109.49988 * 60.76733 * 7 6 5 30 30 H 1.08997 * 109.50178 * 180.84867 * 7 6 5 31 31 H 1.08995 * 109.47299 * 53.83954 * 11 10 8 32 32 H 1.08994 * 109.47369 * 173.84302 * 11 10 8 33 33 H 1.08999 * 109.46552 * 293.84202 * 11 10 8 34 34 H 1.09001 * 109.47101 * 290.00439 * 12 10 8 35 35 H 1.08999 * 109.46992 * 50.00410 * 12 10 8 36 36 H 0.96996 * 120.00482 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0409 -0.7236 -1.2480 5 7 1.5676 -2.1135 -1.2374 6 6 2.0845 -2.8418 -0.0717 7 6 1.5749 -2.1813 1.2112 8 6 2.0412 -0.7233 1.2488 9 1 3.1304 -0.6897 1.2691 10 7 1.5073 -0.0680 2.4503 11 6 1.8011 -0.8564 3.6545 12 6 2.0257 1.3006 2.5778 13 6 1.2776 2.0214 3.6695 14 1 0.4957 1.5135 4.2146 15 6 1.5922 3.3289 3.9735 16 7 0.9391 3.9581 4.9259 17 14 2.9452 4.2073 3.0314 18 1 2.3629 4.8841 1.8447 19 1 3.5864 5.2165 3.9119 20 1 3.9616 3.2193 2.5887 21 1 -0.3633 -1.0271 0.0333 22 1 -0.3633 0.5424 0.8729 23 1 -0.3633 0.4848 -0.9062 24 1 3.1308 -0.7112 -1.2543 25 1 1.6669 -0.2191 -2.1389 26 1 0.5598 -2.1526 -1.2704 27 1 1.7422 -3.8760 -0.1085 28 1 3.1743 -2.8193 -0.0835 29 1 0.4856 -2.2156 1.2302 30 1 1.9709 -2.7130 2.0763 31 1 2.8714 -1.0560 3.7060 32 1 1.4926 -0.2983 4.5385 33 1 1.2571 -1.8001 3.6125 34 1 3.0865 1.2657 2.8261 35 1 1.8905 1.8297 1.6344 36 1 1.1601 4.8781 5.1394 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306218825.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:47 Heat of formation + Delta-G solvation = -20.467214 kcal Electronic energy + Delta-G solvation = -15183.409668 eV Core-core repulsion = 12894.209218 eV Total energy + Delta-G solvation = -2289.200451 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.80353 -37.37180 -34.67327 -33.17969 -31.76301 -29.57509 -27.74592 -26.64951 -24.28014 -23.02807 -22.07487 -19.80789 -19.06181 -17.15062 -16.78911 -16.52919 -15.76363 -15.62401 -15.34475 -14.70762 -14.47239 -14.20475 -13.80740 -13.69690 -13.30660 -12.99393 -12.86167 -12.56072 -12.40814 -12.33618 -12.08521 -11.96085 -11.88293 -11.47203 -11.30638 -10.97421 -10.77669 -9.32163 -9.00019 -8.31625 -6.34181 1.29884 1.31057 1.41596 2.30194 3.00951 3.14395 3.49164 3.77417 3.90011 4.15343 4.24111 4.35556 4.42157 4.54212 4.57746 4.59149 4.75411 4.84031 4.85706 4.88601 4.98537 5.01775 5.04775 5.14283 5.19293 5.26450 5.40789 5.52963 5.55784 5.98684 6.09489 6.36941 6.52425 6.65879 6.72141 7.29233 8.84982 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041613 B = 0.009121 C = 0.008386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.698379 B = 3069.191238 C = 3338.219525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.123 4.123 3 H 0.052 0.948 4 C 0.071 3.929 5 N -0.683 5.683 6 C 0.064 3.936 7 C -0.144 4.144 8 C 0.085 3.915 9 H 0.019 0.981 10 N -0.536 5.536 11 C 0.039 3.961 12 C 0.174 3.826 13 C -0.513 4.513 14 H 0.038 0.962 15 C 0.009 3.991 16 N -0.947 5.947 17 Si 0.943 3.057 18 H -0.263 1.263 19 H -0.280 1.280 20 H -0.257 1.257 21 H 0.062 0.938 22 H 0.039 0.961 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.347 0.653 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.016 0.984 32 H 0.046 0.954 33 H 0.079 0.921 34 H -0.024 1.024 35 H 0.029 0.971 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.174 -11.954 -12.223 17.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.144 4.144 3 H 0.071 0.929 4 C -0.059 4.059 5 N -0.312 5.312 6 C -0.066 4.066 7 C -0.184 4.184 8 C -0.023 4.023 9 H 0.037 0.963 10 N -0.259 5.259 11 C -0.109 4.109 12 C 0.047 3.953 13 C -0.552 4.552 14 H 0.057 0.943 15 C -0.188 4.188 16 N -0.587 5.587 17 Si 0.767 3.233 18 H -0.188 1.188 19 H -0.205 1.205 20 H -0.181 1.181 21 H 0.081 0.919 22 H 0.058 0.942 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.166 0.834 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.098 0.902 34 H -0.006 1.006 35 H 0.047 0.953 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.150 -12.004 -12.616 17.697 hybrid contribution 0.727 1.391 1.277 2.023 sum 3.877 -10.612 -11.339 16.007 Atomic orbital electron populations 1.21612 0.94165 1.01720 1.01103 1.21877 0.97608 0.99365 0.95540 0.92924 1.21994 1.00068 0.88149 0.95719 1.60737 1.16102 1.13088 1.41237 1.22033 1.00198 0.97975 0.86417 1.22370 1.01898 0.93640 1.00467 1.21729 0.95131 0.95000 0.90439 0.96316 1.61934 1.59353 1.02179 1.02469 1.22221 0.97807 0.97761 0.93147 1.19902 0.91960 0.87592 0.95862 1.21252 1.18836 0.97357 1.17708 0.94329 1.25806 0.98836 0.98182 0.95997 1.70036 1.43517 1.12506 1.32691 0.85777 0.79821 0.78696 0.79049 1.18810 1.20523 1.18060 0.91906 0.94216 0.92253 0.91359 0.89337 0.83433 0.88660 0.91300 0.91131 0.91218 0.96578 0.93490 0.90206 1.00625 0.95283 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 8.37 71.98 0.60 -3.18 16 2 C -0.12 -3.69 2.48 -10.75 -0.03 -3.71 16 3 H 0.05 1.81 6.46 -2.39 -0.02 1.79 16 4 C 0.07 1.65 6.06 86.33 0.52 2.17 16 5 N -0.68 -14.16 6.80 -514.01 -3.49 -17.65 16 6 C 0.06 1.29 6.55 86.33 0.57 1.86 16 7 C -0.14 -3.64 4.39 30.65 0.13 -3.51 16 8 C 0.09 2.79 1.69 44.99 0.08 2.87 16 9 H 0.02 0.65 8.13 -2.39 -0.02 0.63 16 10 N -0.54 -22.17 3.81 -901.18 -3.43 -25.60 16 11 C 0.04 1.50 8.64 127.69 1.10 2.60 16 12 C 0.17 8.53 3.65 85.56 0.31 8.85 16 13 C -0.51 -30.15 8.92 25.60 0.23 -29.93 16 14 H 0.04 2.52 7.42 -2.91 -0.02 2.50 16 15 C 0.01 0.54 5.47 84.66 0.46 1.00 16 16 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 17 Si 0.94 44.86 27.47 68.60 1.88 46.74 16 18 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.26 -11.60 6.54 99.48 0.65 -10.95 16 21 H 0.06 1.61 5.12 -2.39 -0.01 1.59 16 22 H 0.04 1.48 7.61 -2.39 -0.02 1.46 16 23 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 24 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.35 6.63 7.19 -89.69 -0.64 5.98 16 27 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.07 1.84 6.54 -2.39 -0.02 1.82 16 30 H 0.07 1.71 6.62 -2.39 -0.02 1.69 16 31 H 0.02 0.58 8.12 -2.39 -0.02 0.56 16 32 H 0.05 2.11 6.64 -2.39 -0.02 2.09 16 33 H 0.08 2.58 6.65 -2.39 -0.02 2.56 16 34 H -0.02 -1.20 7.18 -2.39 -0.02 -1.22 16 35 H 0.03 1.42 5.52 -2.39 -0.01 1.40 16 36 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -65.44 267.23 -0.40 -65.84 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.35 Total: 11.14 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 3.98 Total: -20.98 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -6.62 Total: -102.75 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -65.44 -0.40 -65.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306218825.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.375 kcal (2) G-P(sol) polarization free energy of solvation -65.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds