Wall clock time and date at job start Mon Mar 30 2020 02:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46738 * 2 1 4 4 C 1.50709 * 109.46815 * 240.00983 * 2 1 3 5 5 H 1.07998 * 119.99230 * 239.99701 * 4 2 1 6 6 C 1.37874 * 119.99884 * 59.99696 * 4 2 1 7 7 N 1.31507 * 120.00201 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99558 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47120 * 89.99832 * 8 6 4 10 10 H 1.48500 * 109.47250 * 209.99624 * 8 6 4 11 11 H 1.48503 * 109.47247 * 330.00136 * 8 6 4 12 12 N 1.46896 * 109.47599 * 120.00784 * 2 1 3 13 13 C 1.46897 * 110.99632 * 272.17914 * 12 2 1 14 14 H 1.08999 * 110.29390 * 32.58656 * 13 12 2 15 15 C 1.54385 * 110.32472 * 154.71510 * 13 12 2 16 16 N 1.48554 * 104.70029 * 94.97914 * 15 13 12 17 17 C 1.46901 * 110.99879 * 159.10111 * 16 15 13 18 18 C 1.48855 * 104.07423 * 39.47461 * 16 15 13 19 19 C 1.54259 * 110.32609 * 270.34959 * 13 12 2 20 20 H 1.09003 * 110.32715 * 359.97438 * 19 13 12 21 21 C 1.53001 * 110.32615 * 122.10695 * 19 13 12 22 22 H 1.08998 * 109.47135 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46804 * 300.02036 * 1 2 3 24 24 H 1.08996 * 109.47728 * 60.02423 * 1 2 3 25 25 H 0.97007 * 119.99821 * 180.02562 * 7 6 4 26 26 H 1.00898 * 111.00121 * 148.22649 * 12 2 1 27 27 H 1.09000 * 110.40853 * 213.82373 * 15 13 12 28 28 H 1.09005 * 110.40696 * 336.14620 * 15 13 12 29 29 H 1.08997 * 109.47350 * 60.00219 * 17 16 15 30 30 H 1.08999 * 109.47385 * 180.02562 * 17 16 15 31 31 H 1.09004 * 109.46924 * 300.00146 * 17 16 15 32 32 H 1.09008 * 110.39174 * 201.74882 * 18 16 15 33 33 H 1.09000 * 110.39698 * 79.33771 * 18 16 15 34 34 H 1.09000 * 109.46782 * 60.00468 * 21 19 13 35 35 H 1.09004 * 109.46909 * 179.97438 * 21 19 13 36 36 H 1.08995 * 109.47092 * 300.00205 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2307 5 1 2.6532 -1.5883 -1.1316 6 6 1.6991 -0.2390 -2.4828 7 7 0.9426 0.8299 -2.6033 8 14 2.3223 -1.1190 -4.0082 9 1 1.3446 -2.1610 -4.4126 10 1 2.4869 -0.1396 -5.1122 11 1 3.6307 -1.7561 -3.7123 12 7 2.0197 -0.6926 1.1993 13 6 2.1461 0.2373 2.3294 14 1 1.3806 1.0110 2.2697 15 6 2.0339 -0.5258 3.6668 16 7 3.4389 -0.8042 4.0610 17 6 3.5384 -1.0704 5.5022 18 6 4.1711 0.4385 3.6930 19 6 3.5520 0.8717 2.3467 20 1 4.1487 0.4928 1.5169 21 6 3.4480 2.3964 2.2733 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5142 0.8898 24 1 -0.3634 0.5134 -0.8901 25 1 0.7079 1.1612 -3.4843 26 1 2.8953 -1.1591 1.0152 27 1 1.5438 0.0937 4.4179 28 1 1.4863 -1.4580 3.5278 29 1 2.9265 -1.9363 5.7549 30 1 4.5774 -1.2705 5.7639 31 1 3.1852 -0.2014 6.0575 32 1 5.2346 0.2315 3.5734 33 1 4.0156 1.2089 4.4483 34 1 2.8817 2.7636 3.1292 35 1 4.4481 2.8299 2.2869 36 1 2.9403 2.6820 1.3520 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306435937.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:28 Heat of formation + Delta-G solvation = -0.755709 kcal Electronic energy + Delta-G solvation = -14854.490900 eV Core-core repulsion = 12566.145204 eV Total energy + Delta-G solvation = -2288.345696 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.05423 -35.32104 -33.05724 -31.69624 -29.23011 -27.00083 -26.54644 -25.08264 -23.34678 -20.72379 -20.01402 -19.45776 -16.47074 -15.61501 -15.19806 -14.60507 -14.36467 -13.84488 -13.56540 -13.01782 -12.64765 -12.41816 -12.07806 -11.71245 -11.68097 -11.45775 -11.15218 -10.98625 -10.85911 -10.58421 -10.49435 -10.29930 -10.17133 -10.07699 -9.72671 -8.78129 -8.43581 -8.27916 -7.13272 -5.99222 -4.05079 3.32245 3.38497 3.42015 4.27476 4.43411 4.92963 5.03337 5.16364 5.32614 5.44115 5.49377 5.50312 5.72865 5.83887 5.85642 5.87758 5.91630 6.05412 6.22329 6.24783 6.44814 6.53322 6.65916 6.93456 7.07306 7.20421 7.23366 7.31066 7.58473 7.83057 7.97350 8.32091 8.49207 8.76390 9.07961 9.60891 11.07003 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042800 B = 0.007600 C = 0.007543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.050084 B = 3683.498573 C = 3710.987180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H 0.003 0.997 4 C -0.517 4.517 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.677 5.677 13 C 0.092 3.908 14 H 0.076 0.924 15 C 0.040 3.960 16 N -0.514 5.514 17 C 0.016 3.984 18 C 0.038 3.962 19 C -0.125 4.125 20 H 0.082 0.918 21 C -0.140 4.140 22 H 0.030 0.970 23 H 0.002 0.998 24 H 0.079 0.921 25 H 0.260 0.740 26 H 0.336 0.664 27 H 0.035 0.965 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.022 0.978 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.108 0.890 11.715 12.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.021 0.979 4 C -0.556 4.556 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.308 5.308 13 C -0.020 4.020 14 H 0.094 0.906 15 C -0.089 4.089 16 N -0.237 5.237 17 C -0.133 4.133 18 C -0.090 4.090 19 C -0.146 4.146 20 H 0.101 0.899 21 C -0.198 4.198 22 H 0.050 0.950 23 H 0.021 0.979 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.155 0.845 27 H 0.053 0.947 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.607 0.295 11.484 12.041 hybrid contribution 0.768 0.810 -0.612 1.274 sum 4.375 1.106 10.872 11.771 Atomic orbital electron populations 1.21729 0.98138 0.99262 0.99159 1.19100 0.92355 0.92524 0.85648 0.97931 1.21319 1.31260 1.12428 0.90587 0.92276 1.24906 0.95094 0.94980 0.98984 1.69898 1.36784 1.22946 1.23346 0.86552 0.79252 0.79343 0.82569 1.20652 1.21345 1.19948 1.60720 1.34182 1.29339 1.06540 1.22322 0.94169 0.93562 0.91946 0.90562 1.23273 0.89149 1.00663 0.95766 1.65435 1.09945 1.33322 1.15031 1.22473 1.01908 1.00278 0.88673 1.23227 0.98736 0.90655 0.96401 1.22724 0.98676 0.95965 0.97189 0.89933 1.21820 1.01092 0.94932 1.01951 0.95048 0.97868 0.90230 0.93019 0.84490 0.94703 0.89141 0.91480 0.91771 0.95931 0.90833 0.94302 0.93317 0.93199 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.14 9.21 37.16 0.34 -2.79 16 2 C 0.21 5.35 2.45 -68.86 -0.17 5.18 16 3 H 0.00 0.08 7.73 -51.93 -0.40 -0.32 16 4 C -0.52 -14.29 8.59 -34.44 -0.30 -14.59 16 5 H 0.06 1.62 7.57 -52.49 -0.40 1.23 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.55 11.32 55.43 0.63 -24.92 16 8 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 12 N -0.68 -14.68 6.07 -99.51 -0.60 -15.28 16 13 C 0.09 1.68 2.79 -66.33 -0.19 1.50 16 14 H 0.08 1.47 6.98 -51.93 -0.36 1.11 16 15 C 0.04 0.64 6.20 -2.18 -0.01 0.62 16 16 N -0.51 -7.69 5.67 -237.96 -1.35 -9.04 16 17 C 0.02 0.19 9.54 60.06 0.57 0.76 16 18 C 0.04 0.54 6.05 -2.02 -0.01 0.53 16 19 C -0.12 -2.05 3.30 -89.24 -0.29 -2.34 16 20 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 21 C -0.14 -2.10 8.93 37.16 0.33 -1.77 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.00 0.05 7.71 -51.93 -0.40 -0.35 16 24 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.34 7.41 7.56 -39.29 -0.30 7.12 16 27 H 0.03 0.51 7.97 -51.93 -0.41 0.09 16 28 H 0.09 1.53 8.06 -51.93 -0.42 1.12 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.02 0.25 7.98 -51.93 -0.41 -0.16 16 32 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 33 H 0.04 0.51 7.61 -51.93 -0.40 0.11 16 34 H 0.05 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 1.08 8.06 -51.93 -0.42 0.67 16 LS Contribution 284.27 15.07 4.28 4.28 Total: -1.00 -28.11 284.27 -8.18 -36.28 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.30 Total: 3.51 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 0.18 Total: -11.28 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -1.33 Total: -49.24 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.11 -8.18 -36.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306435937.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.527 kcal (2) G-P(sol) polarization free energy of solvation -28.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds