Wall clock time and date at job start Mon Mar 30 2020 02:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46914 * 2 1 4 4 C 1.50705 * 109.46908 * 240.00900 * 2 1 3 5 5 H 1.08005 * 119.99303 * 274.99757 * 4 2 1 6 6 C 1.37871 * 120.00479 * 94.99559 * 4 2 1 7 7 N 1.31513 * 119.99927 * 184.91361 * 6 4 2 8 8 Si 1.86805 * 119.99816 * 4.91954 * 6 4 2 9 9 H 1.48497 * 109.47013 * 84.82979 * 8 6 4 10 10 H 1.48503 * 109.46634 * 204.83068 * 8 6 4 11 11 H 1.48502 * 109.47031 * 324.82559 * 8 6 4 12 12 N 1.46894 * 109.47361 * 120.00474 * 2 1 3 13 13 C 1.46902 * 111.00028 * 274.99572 * 12 2 1 14 14 H 1.09002 * 110.28488 * 34.30389 * 13 12 2 15 15 C 1.54377 * 110.32799 * 272.17347 * 13 12 2 16 16 N 1.48722 * 104.51835 * 217.32087 * 15 13 12 17 17 C 1.46902 * 111.01146 * 158.96411 * 16 15 13 18 18 C 1.48565 * 104.28632 * 39.36419 * 16 15 13 19 19 C 1.54260 * 110.32098 * 156.42753 * 13 12 2 20 20 H 1.09009 * 110.32017 * 237.79344 * 19 13 12 21 21 C 1.52995 * 110.32649 * 359.97438 * 19 13 12 22 22 H 1.08998 * 109.47366 * 55.03390 * 1 2 3 23 23 H 1.08997 * 109.47054 * 175.03899 * 1 2 3 24 24 H 1.09003 * 109.46709 * 295.03771 * 1 2 3 25 25 H 0.97011 * 119.99846 * 180.02562 * 7 6 4 26 26 H 1.00906 * 111.00151 * 151.04638 * 12 2 1 27 27 H 1.09008 * 110.41230 * 336.03270 * 15 13 12 28 28 H 1.08997 * 110.41276 * 98.47071 * 15 13 12 29 29 H 1.08998 * 109.47495 * 304.61700 * 17 16 15 30 30 H 1.08999 * 109.47093 * 64.62120 * 17 16 15 31 31 H 1.09005 * 109.46597 * 184.61360 * 17 16 15 32 32 H 1.08996 * 110.40486 * 201.79695 * 18 16 15 33 33 H 1.08996 * 110.50883 * 79.40064 * 18 16 15 34 34 H 1.09006 * 109.46734 * 60.00279 * 21 19 13 35 35 H 1.09000 * 109.47250 * 180.02562 * 21 19 13 36 36 H 1.08997 * 109.47341 * 300.00323 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.1354 -1.7854 -1.2292 6 6 2.3601 0.0123 -2.3581 7 7 2.7058 -0.6129 -3.4623 8 14 2.3134 1.8793 -2.3173 9 1 3.5990 2.3950 -1.7821 10 1 2.1056 2.3994 -3.6927 11 1 1.1985 2.3276 -1.4449 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2225 2.3468 14 1 1.2699 0.9472 2.2973 15 6 3.4455 0.9467 2.3812 16 7 3.7807 1.0421 3.8270 17 6 5.2232 1.2410 4.0212 18 6 3.3421 -0.2601 4.3917 19 6 2.0139 -0.5701 3.6684 20 1 1.1685 -0.2332 4.2684 21 6 1.9004 -2.0691 3.3839 22 1 -0.3634 0.5889 -0.8421 23 1 -0.3633 -1.0238 -0.0889 24 1 -0.3633 0.4349 0.9311 25 1 2.9368 -0.1045 -4.2556 26 1 2.9174 -1.1206 1.0285 27 1 4.1999 0.3624 1.8541 28 1 3.3589 1.9409 1.9428 29 1 5.7708 0.4427 3.5204 30 1 5.5172 2.2027 3.6007 31 1 5.4518 1.2254 5.0869 32 1 3.1787 -0.1728 5.4658 33 1 4.0791 -1.0351 4.1817 34 1 2.7711 -2.3982 2.8167 35 1 1.8524 -2.6152 4.3260 36 1 0.9964 -2.2619 2.8061 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306435939.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:33 Heat of formation + Delta-G solvation = 2.861488 kcal Electronic energy + Delta-G solvation = -14993.050340 eV Core-core repulsion = 12704.861498 eV Total energy + Delta-G solvation = -2288.188842 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.18983 -35.51104 -33.09135 -31.85976 -29.61531 -27.51245 -26.11884 -25.20919 -23.71575 -21.07742 -19.97462 -18.96972 -16.97802 -16.06258 -15.10218 -14.92950 -14.29861 -13.92305 -13.28104 -13.06152 -13.00233 -12.49275 -12.46276 -12.07250 -11.95583 -11.44864 -11.30923 -11.02324 -10.87714 -10.77846 -10.61831 -10.35901 -10.24875 -10.02652 -9.75762 -9.01505 -8.61780 -8.41372 -7.39237 -6.13545 -4.14105 3.22994 3.32538 3.34833 4.17735 4.36045 4.85891 4.93700 5.10644 5.26322 5.34391 5.50334 5.52147 5.62933 5.76326 5.81019 5.86826 5.94541 6.03216 6.14283 6.33009 6.35087 6.46776 6.60321 6.67669 6.80184 6.80767 6.89077 7.04393 7.13231 7.41418 7.62109 7.98412 8.38074 8.64530 8.95870 9.50934 10.99476 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033120 B = 0.009775 C = 0.008590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.210348 B = 2863.895961 C = 3258.912690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.178 3.822 3 H 0.004 0.996 4 C -0.518 4.518 5 H 0.079 0.921 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.874 3.126 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.265 1.265 12 N -0.670 5.670 13 C 0.085 3.915 14 H 0.079 0.921 15 C 0.004 3.996 16 N -0.518 5.518 17 C 0.014 3.986 18 C 0.034 3.966 19 C -0.088 4.088 20 H 0.072 0.928 21 C -0.120 4.120 22 H 0.039 0.961 23 H 0.051 0.949 24 H 0.020 0.980 25 H 0.264 0.736 26 H 0.339 0.661 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.034 0.966 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.488 2.310 13.638 13.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.070 3.930 3 H 0.022 0.978 4 C -0.556 4.556 5 H 0.097 0.903 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.702 3.298 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.189 1.189 12 N -0.301 5.301 13 C -0.027 4.027 14 H 0.097 0.903 15 C -0.126 4.126 16 N -0.241 5.241 17 C -0.135 4.135 18 C -0.094 4.094 19 C -0.107 4.107 20 H 0.091 0.909 21 C -0.178 4.178 22 H 0.058 0.942 23 H 0.070 0.930 24 H 0.040 0.960 25 H 0.074 0.926 26 H 0.159 0.841 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.666 2.540 13.843 14.089 hybrid contribution 1.380 1.017 -0.798 1.890 sum 2.045 3.556 13.045 13.675 Atomic orbital electron populations 1.21842 0.98116 1.00642 0.97699 1.19577 0.92393 0.92545 0.88461 0.97848 1.21080 1.43587 0.95847 0.95117 0.90304 1.25027 0.94426 0.98127 0.95351 1.69905 1.46086 1.35777 1.01655 0.86905 0.79003 0.86662 0.77244 1.20388 1.21438 1.18927 1.60896 1.32764 1.31510 1.04910 1.22337 0.94947 0.93317 0.92065 0.90274 1.24020 0.98600 1.01414 0.88548 1.65350 1.15087 1.31423 1.12273 1.22486 0.88570 1.01046 1.01399 1.23243 0.96770 0.90035 0.99324 1.21923 0.96294 0.96866 0.95636 0.90941 1.21493 1.03473 0.93440 0.99380 0.94187 0.93027 0.96048 0.92594 0.84120 0.93336 0.90717 0.95425 0.91569 0.91679 0.90818 0.93877 0.92871 0.94651 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.40 37.16 0.35 -2.36 16 2 C 0.18 4.12 2.12 -68.87 -0.15 3.98 16 3 H 0.00 0.09 4.93 -51.93 -0.26 -0.17 16 4 C -0.52 -14.18 8.84 -34.44 -0.30 -14.48 16 5 H 0.08 2.37 8.06 -52.48 -0.42 1.94 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 7 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 8 Si 0.87 21.40 26.99 -169.99 -4.59 16.81 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.26 -6.26 6.82 56.52 0.39 -5.88 16 12 N -0.67 -13.26 4.35 -99.51 -0.43 -13.69 16 13 C 0.09 1.47 3.10 -66.33 -0.21 1.26 16 14 H 0.08 1.43 7.17 -51.93 -0.37 1.06 16 15 C 0.00 0.07 6.07 -2.09 -0.01 0.05 16 16 N -0.52 -7.61 5.66 -238.08 -1.35 -8.96 16 17 C 0.01 0.18 9.53 60.07 0.57 0.75 16 18 C 0.03 0.46 6.04 -2.18 -0.01 0.45 16 19 C -0.09 -1.27 3.65 -89.24 -0.33 -1.60 16 20 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 21 C -0.12 -1.71 8.11 37.15 0.30 -1.40 16 22 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.02 0.41 7.41 -51.93 -0.39 0.02 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.34 6.92 7.29 -39.29 -0.29 6.64 16 27 H 0.05 0.85 7.34 -51.92 -0.38 0.47 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.03 0.34 7.98 -51.93 -0.41 -0.07 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.57 7.66 -51.93 -0.40 0.18 16 34 H 0.05 0.79 7.48 -51.93 -0.39 0.40 16 35 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 1.12 7.84 -51.93 -0.41 0.71 16 LS Contribution 280.93 15.07 4.23 4.23 Total: -1.00 -28.48 280.93 -7.49 -35.97 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.24 Total: 3.26 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 0.12 Total: -11.38 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -1.01 Total: -48.88 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.59 Total: 16.81 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.48 -7.49 -35.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306435939.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.826 kcal (2) G-P(sol) polarization free energy of solvation -28.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds