Wall clock time and date at job start Mon Mar 30 2020 02:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46914 * 2 1 4 4 C 1.50705 * 109.46908 * 240.00900 * 2 1 3 5 5 H 1.08005 * 119.99303 * 274.99757 * 4 2 1 6 6 C 1.37871 * 120.00479 * 94.99559 * 4 2 1 7 7 N 1.31513 * 119.99927 * 184.91361 * 6 4 2 8 8 Si 1.86805 * 119.99816 * 4.91954 * 6 4 2 9 9 H 1.48497 * 109.47013 * 84.82979 * 8 6 4 10 10 H 1.48503 * 109.46634 * 204.83068 * 8 6 4 11 11 H 1.48502 * 109.47031 * 324.82559 * 8 6 4 12 12 N 1.46894 * 109.47361 * 120.00474 * 2 1 3 13 13 C 1.46902 * 111.00028 * 274.99572 * 12 2 1 14 14 H 1.09002 * 110.28488 * 34.30389 * 13 12 2 15 15 C 1.54377 * 110.32799 * 272.17347 * 13 12 2 16 16 N 1.48722 * 104.51835 * 217.32087 * 15 13 12 17 17 C 1.46902 * 111.01146 * 158.96411 * 16 15 13 18 18 C 1.48565 * 104.28632 * 39.36419 * 16 15 13 19 19 C 1.54260 * 110.32098 * 156.42753 * 13 12 2 20 20 H 1.09009 * 110.32017 * 237.79344 * 19 13 12 21 21 C 1.52995 * 110.32649 * 359.97438 * 19 13 12 22 22 H 1.08998 * 109.47366 * 55.03390 * 1 2 3 23 23 H 1.08997 * 109.47054 * 175.03899 * 1 2 3 24 24 H 1.09003 * 109.46709 * 295.03771 * 1 2 3 25 25 H 0.97011 * 119.99846 * 180.02562 * 7 6 4 26 26 H 1.00906 * 111.00151 * 151.04638 * 12 2 1 27 27 H 1.09008 * 110.41230 * 336.03270 * 15 13 12 28 28 H 1.08997 * 110.41276 * 98.47071 * 15 13 12 29 29 H 1.08998 * 109.47495 * 304.61700 * 17 16 15 30 30 H 1.08999 * 109.47093 * 64.62120 * 17 16 15 31 31 H 1.09005 * 109.46597 * 184.61360 * 17 16 15 32 32 H 1.08996 * 110.40486 * 201.79695 * 18 16 15 33 33 H 1.08996 * 110.50883 * 79.40064 * 18 16 15 34 34 H 1.09006 * 109.46734 * 60.00279 * 21 19 13 35 35 H 1.09000 * 109.47250 * 180.02562 * 21 19 13 36 36 H 1.08997 * 109.47341 * 300.00323 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.1354 -1.7854 -1.2292 6 6 2.3601 0.0123 -2.3581 7 7 2.7058 -0.6129 -3.4623 8 14 2.3134 1.8793 -2.3173 9 1 3.5990 2.3950 -1.7821 10 1 2.1056 2.3994 -3.6927 11 1 1.1985 2.3276 -1.4449 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2225 2.3468 14 1 1.2699 0.9472 2.2973 15 6 3.4455 0.9467 2.3812 16 7 3.7807 1.0421 3.8270 17 6 5.2232 1.2410 4.0212 18 6 3.3421 -0.2601 4.3917 19 6 2.0139 -0.5701 3.6684 20 1 1.1685 -0.2332 4.2684 21 6 1.9004 -2.0691 3.3839 22 1 -0.3634 0.5889 -0.8421 23 1 -0.3633 -1.0238 -0.0889 24 1 -0.3633 0.4349 0.9311 25 1 2.9368 -0.1045 -4.2556 26 1 2.9174 -1.1206 1.0285 27 1 4.1999 0.3624 1.8541 28 1 3.3589 1.9409 1.9428 29 1 5.7708 0.4427 3.5204 30 1 5.5172 2.2027 3.6007 31 1 5.4518 1.2254 5.0869 32 1 3.1787 -0.1728 5.4658 33 1 4.0791 -1.0351 4.1817 34 1 2.7711 -2.3982 2.8167 35 1 1.8524 -2.6152 4.3260 36 1 0.9964 -2.2619 2.8061 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306435939.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:33 Heat of formation + Delta-G solvation = -17.447043 kcal Electronic energy + Delta-G solvation = -14993.930984 eV Core-core repulsion = 12704.861498 eV Total energy + Delta-G solvation = -2289.069486 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.45776 -37.14606 -34.69938 -33.57895 -31.16389 -28.80822 -27.45391 -27.12998 -24.96527 -22.33563 -21.70537 -20.36773 -18.97607 -17.53572 -16.52420 -16.35581 -15.71454 -15.42566 -14.71374 -14.64319 -14.47421 -14.26902 -13.82573 -13.53136 -13.13303 -12.98077 -12.67566 -12.64994 -12.54393 -12.30949 -12.04935 -11.89413 -11.77764 -11.57407 -11.30258 -10.99365 -10.75511 -9.56633 -9.00762 -8.32576 -6.37309 1.29363 1.32385 1.42445 2.29903 2.97315 3.06610 3.59261 3.70286 3.86257 4.13902 4.26693 4.42184 4.51512 4.53729 4.59303 4.66310 4.80058 4.87681 4.88945 4.92581 4.93923 4.95041 5.05548 5.16740 5.28397 5.42625 5.51922 5.64014 5.69031 5.80079 6.03991 6.08000 6.54117 6.69969 6.84941 7.32223 8.84080 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033120 B = 0.009775 C = 0.008590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.210348 B = 2863.895961 C = 3258.912690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.183 3.817 3 H 0.002 0.998 4 C -0.517 4.517 5 H 0.038 0.962 6 C 0.017 3.983 7 N -0.944 5.944 8 Si 0.937 3.063 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.248 1.248 12 N -0.666 5.666 13 C 0.081 3.919 14 H 0.074 0.926 15 C 0.007 3.993 16 N -0.522 5.522 17 C 0.012 3.988 18 C 0.038 3.962 19 C -0.082 4.082 20 H 0.085 0.915 21 C -0.114 4.114 22 H 0.034 0.966 23 H 0.043 0.957 24 H 0.048 0.952 25 H 0.266 0.734 26 H 0.334 0.666 27 H 0.035 0.965 28 H 0.065 0.935 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.060 0.940 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 3.658 15.941 16.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.074 3.926 3 H 0.019 0.981 4 C -0.556 4.556 5 H 0.056 0.944 6 C -0.181 4.181 7 N -0.584 5.584 8 Si 0.762 3.238 9 H -0.195 1.195 10 H -0.213 1.213 11 H -0.172 1.172 12 N -0.296 5.296 13 C -0.030 4.030 14 H 0.092 0.908 15 C -0.123 4.123 16 N -0.246 5.246 17 C -0.136 4.136 18 C -0.090 4.090 19 C -0.102 4.102 20 H 0.104 0.896 21 C -0.172 4.172 22 H 0.053 0.947 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.152 0.848 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.497 3.886 16.180 16.648 hybrid contribution 1.448 0.503 -1.458 2.115 sum 1.945 4.389 14.723 15.485 Atomic orbital electron populations 1.21744 0.96834 1.00368 0.98885 1.19443 0.93297 0.91917 0.87949 0.98051 1.21291 1.43031 0.94236 0.97047 0.94417 1.25841 0.94271 1.03114 0.94859 1.70049 1.48004 1.37808 1.02576 0.85887 0.79775 0.80625 0.77542 1.19540 1.21255 1.17176 1.60843 1.32445 1.31848 1.04450 1.22425 0.95146 0.93263 0.92162 0.90753 1.23870 0.97890 1.00466 0.90073 1.65368 1.16634 1.32125 1.10455 1.22562 0.87124 1.01055 1.02878 1.23278 0.95888 0.89463 1.00326 1.21910 0.97652 0.96434 0.94172 0.89621 1.21415 1.01928 0.93682 1.00189 0.94713 0.93796 0.93355 0.92500 0.84779 0.94712 0.91602 0.95699 0.91362 0.89450 0.88519 0.93760 0.94156 0.92138 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.40 71.98 0.68 -4.39 16 2 C 0.18 8.36 2.12 44.17 0.09 8.46 16 3 H 0.00 0.08 4.93 -2.39 -0.01 0.07 16 4 C -0.52 -28.97 8.84 25.60 0.23 -28.74 16 5 H 0.04 2.37 8.06 -2.91 -0.02 2.34 16 6 C 0.02 0.99 5.47 84.65 0.46 1.45 16 7 N -0.94 -58.38 13.96 21.44 0.30 -58.08 16 8 Si 0.94 43.98 26.99 68.60 1.85 45.83 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.25 -10.90 6.82 99.48 0.68 -10.22 16 12 N -0.67 -26.07 4.35 -468.73 -2.04 -28.11 16 13 C 0.08 2.66 3.10 45.81 0.14 2.81 16 14 H 0.07 2.52 7.17 -2.39 -0.02 2.50 16 15 C 0.01 0.23 6.07 86.42 0.52 0.75 16 16 N -0.52 -13.98 5.66 -907.16 -5.13 -19.11 16 17 C 0.01 0.28 9.53 127.69 1.22 1.49 16 18 C 0.04 0.90 6.04 86.45 0.52 1.43 16 19 C -0.08 -2.17 3.65 -9.90 -0.04 -2.21 16 20 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 21 C -0.11 -3.03 8.11 71.98 0.58 -2.45 16 22 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.05 1.76 7.41 -2.39 -0.02 1.74 16 25 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 26 H 0.33 13.77 7.29 -89.69 -0.65 13.12 16 27 H 0.03 1.20 7.34 -2.38 -0.02 1.18 16 28 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.02 0.57 7.98 -2.39 -0.02 0.55 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.04 1.05 7.66 -2.39 -0.02 1.03 16 34 H 0.04 1.16 7.48 -2.38 -0.02 1.14 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.05 1.61 7.84 -2.39 -0.02 1.59 16 Total: -1.00 -61.30 280.93 -0.26 -61.56 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.35 Total: 19.31 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: 4.41 Total: -21.40 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -6.87 Total: -105.30 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.85 Total: 45.83 kcal Total: -61.30 -0.26 -61.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306435939.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.111 kcal (2) G-P(sol) polarization free energy of solvation -61.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds