Wall clock time and date at job start Mon Mar 30 2020 02:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47148 * 2 1 4 4 C 1.50703 * 109.46976 * 240.00303 * 2 1 3 5 5 H 1.07999 * 119.99851 * 240.00256 * 4 2 1 6 6 C 1.37882 * 120.00094 * 60.00101 * 4 2 1 7 7 N 1.31506 * 120.00010 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99759 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46907 * 90.00253 * 8 6 4 10 10 H 1.48495 * 109.47171 * 209.99823 * 8 6 4 11 11 H 1.48500 * 109.47561 * 330.00397 * 8 6 4 12 12 N 1.46898 * 109.47079 * 120.00446 * 2 1 3 13 13 C 1.46901 * 110.99896 * 274.99690 * 12 2 1 14 14 H 1.09005 * 110.87445 * 37.39116 * 13 12 2 15 15 C 1.54906 * 110.99152 * 273.54520 * 13 12 2 16 16 N 1.47840 * 104.79510 * 204.83721 * 15 13 12 17 17 C 1.46897 * 110.99988 * 146.36231 * 16 15 13 18 18 C 1.47446 * 108.56768 * 24.09731 * 16 15 13 19 19 C 1.54318 * 107.23303 * 359.00691 * 18 16 15 20 20 H 1.09003 * 110.70170 * 96.09788 * 19 18 16 21 21 C 1.53000 * 110.70507 * 219.33434 * 19 18 16 22 22 H 1.08997 * 109.47729 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47097 * 300.00278 * 1 2 3 24 24 H 1.09010 * 109.47131 * 59.99506 * 1 2 3 25 25 H 0.96995 * 120.00160 * 179.97438 * 7 6 4 26 26 H 1.00908 * 110.99657 * 38.94970 * 12 2 1 27 27 H 1.08998 * 110.36925 * 86.00689 * 15 13 12 28 28 H 1.08996 * 110.36967 * 323.66928 * 15 13 12 29 29 H 1.08997 * 109.47423 * 299.28605 * 17 16 15 30 30 H 1.09006 * 109.47254 * 59.28686 * 17 16 15 31 31 H 1.09000 * 109.47337 * 179.28501 * 17 16 15 32 32 H 1.08996 * 109.88895 * 118.41939 * 18 16 15 33 33 H 1.09001 * 109.88694 * 239.60335 * 18 16 15 34 34 H 1.08992 * 109.47083 * 58.54639 * 21 19 18 35 35 H 1.09005 * 109.46748 * 178.55280 * 21 19 18 36 36 H 1.08999 * 109.47106 * 298.54481 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3447 -2.1613 -4.4125 10 1 2.4872 -0.1401 -5.1121 11 1 3.6308 -1.7565 -3.7121 12 7 2.0196 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2426 0.9172 2.3361 15 6 3.4315 0.9832 2.3767 16 7 3.6253 1.3527 3.7950 17 6 5.0496 1.3344 4.1540 18 6 2.8570 0.4145 4.6338 19 6 2.1368 -0.5644 3.6828 20 1 2.7129 -1.4824 3.5662 21 6 0.7255 -0.8701 4.1884 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5140 -0.8900 25 1 0.7087 1.1614 -3.4844 26 1 1.4494 -1.4980 1.4099 27 1 3.3767 1.8773 1.7557 28 1 4.2402 0.3349 2.0395 29 1 5.4484 0.3306 4.0075 30 1 5.5927 2.0369 3.5217 31 1 5.1647 1.6222 5.1989 32 1 3.5322 -0.1348 5.2897 33 1 2.1243 0.9619 5.2268 34 1 0.1591 0.0577 4.2677 35 1 0.2267 -1.5418 3.4896 36 1 0.7852 -1.3442 5.1681 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306435940.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:36 Heat of formation + Delta-G solvation = -1.685948 kcal Electronic energy + Delta-G solvation = -14797.589180 eV Core-core repulsion = 12509.203146 eV Total energy + Delta-G solvation = -2288.386034 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.03983 -35.47616 -33.14168 -31.81981 -29.15102 -27.15712 -26.27345 -25.10902 -23.53604 -20.95823 -19.87757 -19.54601 -16.31924 -15.90424 -15.05897 -14.68587 -14.04489 -13.78564 -13.55203 -13.15752 -12.89881 -12.50887 -12.31767 -12.07664 -11.51589 -11.34839 -11.21006 -11.04921 -10.89374 -10.75567 -10.57267 -10.31272 -10.21215 -10.07418 -9.66947 -8.95468 -8.34231 -8.08290 -7.24435 -5.96243 -3.99499 3.33543 3.39966 3.44478 4.24827 4.47017 4.82226 4.98840 5.11581 5.35275 5.41356 5.54241 5.56063 5.67805 5.73470 5.80437 5.89189 5.96405 6.08290 6.14303 6.35386 6.37489 6.53986 6.62016 6.71996 6.85803 7.13649 7.15771 7.30706 7.44898 7.76579 7.91678 8.30798 8.55928 8.64574 9.07701 9.65754 11.10809 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040049 B = 0.007761 C = 0.007090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.980756 B = 3606.933557 C = 3948.270355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.495 4.495 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.676 5.676 13 C 0.085 3.915 14 H 0.050 0.950 15 C 0.054 3.946 16 N -0.539 5.539 17 C 0.023 3.977 18 C 0.049 3.951 19 C -0.118 4.118 20 H 0.080 0.920 21 C -0.139 4.139 22 H 0.026 0.974 23 H 0.005 0.995 24 H 0.088 0.912 25 H 0.259 0.741 26 H 0.327 0.673 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.025 0.975 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.503 -1.145 12.274 12.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.306 5.306 13 C -0.026 4.026 14 H 0.068 0.932 15 C -0.074 4.074 16 N -0.263 5.263 17 C -0.126 4.126 18 C -0.079 4.079 19 C -0.138 4.138 20 H 0.098 0.902 21 C -0.197 4.197 22 H 0.046 0.954 23 H 0.024 0.976 24 H 0.107 0.893 25 H 0.069 0.931 26 H 0.144 0.856 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.937 -0.429 12.042 12.403 hybrid contribution -0.369 -1.104 -0.828 1.428 sum 2.568 -1.533 11.214 11.606 Atomic orbital electron populations 1.22429 1.00764 0.99092 1.00491 1.19194 0.89544 0.94432 0.86417 0.94771 1.21158 1.30181 1.12379 0.89648 0.92037 1.24947 0.95382 0.95198 0.99008 1.69881 1.37337 1.23165 1.23301 0.86525 0.79214 0.79243 0.82562 1.20873 1.21378 1.19931 1.60786 1.57988 1.08746 1.03075 1.22569 0.96101 0.94145 0.89787 0.93196 1.23028 0.97812 0.99127 0.87462 1.63572 1.08724 1.49554 1.04424 1.22497 0.89076 1.00010 1.01021 1.22836 0.96958 0.92627 0.95495 1.22519 0.96812 0.98842 0.95580 0.90168 1.21723 0.95889 1.01588 1.00470 0.95442 0.97615 0.89295 0.93091 0.85580 0.90547 0.92500 0.95626 0.91537 0.91974 0.93239 0.90875 0.92594 0.92449 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.93 37.16 0.33 -3.75 16 2 C 0.21 5.33 2.46 -68.86 -0.17 5.16 16 3 H 0.03 0.95 7.76 -51.93 -0.40 0.55 16 4 C -0.49 -13.75 8.84 -34.44 -0.30 -14.05 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.84 11.32 55.43 0.63 -25.22 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.68 -14.30 6.11 -98.72 -0.60 -14.91 16 13 C 0.09 1.56 2.54 -65.58 -0.17 1.40 16 14 H 0.05 0.99 7.14 -51.93 -0.37 0.62 16 15 C 0.05 0.96 6.27 -2.30 -0.01 0.95 16 16 N -0.54 -8.31 5.44 -239.53 -1.30 -9.61 16 17 C 0.02 0.29 9.12 60.06 0.55 0.84 16 18 C 0.05 0.67 6.49 -2.83 -0.02 0.66 16 19 C -0.12 -1.74 3.01 -88.80 -0.27 -2.00 16 20 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 21 C -0.14 -1.79 9.13 37.16 0.34 -1.45 16 22 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 23 H 0.00 0.11 7.45 -51.93 -0.39 -0.28 16 24 H 0.09 2.39 6.07 -51.92 -0.32 2.08 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.33 6.59 8.27 -39.29 -0.32 6.27 16 27 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 28 H 0.06 1.07 7.78 -51.93 -0.40 0.67 16 29 H 0.03 0.32 8.10 -51.93 -0.42 -0.10 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.61 7.58 -51.93 -0.39 0.21 16 33 H 0.07 0.95 7.82 -51.93 -0.41 0.55 16 34 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 285.02 15.07 4.30 4.30 Total: -1.00 -28.31 285.02 -8.17 -36.48 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.35 Total: 3.17 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 0.18 Total: -10.81 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -1.28 Total: -49.74 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.31 -8.17 -36.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306435940.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.793 kcal (2) G-P(sol) polarization free energy of solvation -28.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds