Wall clock time and date at job start Mon Mar 30 2020 02:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47148 * 2 1 4 4 C 1.50703 * 109.46976 * 240.00303 * 2 1 3 5 5 H 1.07999 * 119.99851 * 240.00256 * 4 2 1 6 6 C 1.37882 * 120.00094 * 60.00101 * 4 2 1 7 7 N 1.31506 * 120.00010 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99759 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46907 * 90.00253 * 8 6 4 10 10 H 1.48495 * 109.47171 * 209.99823 * 8 6 4 11 11 H 1.48500 * 109.47561 * 330.00397 * 8 6 4 12 12 N 1.46898 * 109.47079 * 120.00446 * 2 1 3 13 13 C 1.46901 * 110.99896 * 274.99690 * 12 2 1 14 14 H 1.09005 * 110.87445 * 37.39116 * 13 12 2 15 15 C 1.54906 * 110.99152 * 273.54520 * 13 12 2 16 16 N 1.47840 * 104.79510 * 204.83721 * 15 13 12 17 17 C 1.46897 * 110.99988 * 146.36231 * 16 15 13 18 18 C 1.47446 * 108.56768 * 24.09731 * 16 15 13 19 19 C 1.54318 * 107.23303 * 359.00691 * 18 16 15 20 20 H 1.09003 * 110.70170 * 96.09788 * 19 18 16 21 21 C 1.53000 * 110.70507 * 219.33434 * 19 18 16 22 22 H 1.08997 * 109.47729 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47097 * 300.00278 * 1 2 3 24 24 H 1.09010 * 109.47131 * 59.99506 * 1 2 3 25 25 H 0.96995 * 120.00160 * 179.97438 * 7 6 4 26 26 H 1.00908 * 110.99657 * 38.94970 * 12 2 1 27 27 H 1.08998 * 110.36925 * 86.00689 * 15 13 12 28 28 H 1.08996 * 110.36967 * 323.66928 * 15 13 12 29 29 H 1.08997 * 109.47423 * 299.28605 * 17 16 15 30 30 H 1.09006 * 109.47254 * 59.28686 * 17 16 15 31 31 H 1.09000 * 109.47337 * 179.28501 * 17 16 15 32 32 H 1.08996 * 109.88895 * 118.41939 * 18 16 15 33 33 H 1.09001 * 109.88694 * 239.60335 * 18 16 15 34 34 H 1.08992 * 109.47083 * 58.54639 * 21 19 18 35 35 H 1.09005 * 109.46748 * 178.55280 * 21 19 18 36 36 H 1.08999 * 109.47106 * 298.54481 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3447 -2.1613 -4.4125 10 1 2.4872 -0.1401 -5.1121 11 1 3.6308 -1.7565 -3.7121 12 7 2.0196 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2426 0.9172 2.3361 15 6 3.4315 0.9832 2.3767 16 7 3.6253 1.3527 3.7950 17 6 5.0496 1.3344 4.1540 18 6 2.8570 0.4145 4.6338 19 6 2.1368 -0.5644 3.6828 20 1 2.7129 -1.4824 3.5662 21 6 0.7255 -0.8701 4.1884 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5140 -0.8900 25 1 0.7087 1.1614 -3.4844 26 1 1.4494 -1.4980 1.4099 27 1 3.3767 1.8773 1.7557 28 1 4.2402 0.3349 2.0395 29 1 5.4484 0.3306 4.0075 30 1 5.5927 2.0369 3.5217 31 1 5.1647 1.6222 5.1989 32 1 3.5322 -0.1348 5.2897 33 1 2.1243 0.9619 5.2268 34 1 0.1591 0.0577 4.2677 35 1 0.2267 -1.5418 3.4896 36 1 0.7852 -1.3442 5.1681 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306435940.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:35 Heat of formation + Delta-G solvation = -21.673545 kcal Electronic energy + Delta-G solvation = -14798.455907 eV Core-core repulsion = 12509.203146 eV Total energy + Delta-G solvation = -2289.252761 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.36290 -37.24092 -34.73174 -33.46689 -30.78475 -28.57998 -27.54180 -27.22322 -24.80971 -22.62784 -21.23899 -21.13580 -18.34076 -17.31208 -16.71654 -16.35455 -15.34077 -15.20093 -15.09151 -14.59823 -14.43913 -13.87331 -13.77069 -13.54305 -13.13290 -12.93394 -12.84848 -12.54636 -12.49514 -12.32264 -12.18138 -11.99408 -11.79773 -11.73262 -11.23880 -10.98651 -10.48739 -9.30950 -8.99816 -8.09565 -6.20909 1.42516 1.43228 1.54251 2.43612 3.01130 3.18870 3.59018 3.67229 3.85544 4.11871 4.32086 4.49090 4.50996 4.56842 4.61880 4.70188 4.73747 4.86079 4.92055 4.94904 4.98540 5.05452 5.07899 5.16670 5.21214 5.36249 5.48222 5.68756 5.82364 5.96411 6.15539 6.28080 6.65254 6.82963 6.94614 7.49155 8.96162 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040049 B = 0.007761 C = 0.007090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.980756 B = 3606.933557 C = 3948.270355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.219 3.781 3 H -0.001 1.001 4 C -0.515 4.515 5 H 0.055 0.945 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.675 5.675 13 C 0.081 3.919 14 H 0.033 0.967 15 C 0.060 3.940 16 N -0.548 5.548 17 C 0.022 3.978 18 C 0.051 3.949 19 C -0.108 4.108 20 H 0.080 0.920 21 C -0.135 4.135 22 H 0.033 0.967 23 H 0.022 0.978 24 H 0.061 0.939 25 H 0.261 0.739 26 H 0.334 0.666 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.028 0.972 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.847 -2.139 13.612 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.111 3.889 3 H 0.017 0.983 4 C -0.554 4.554 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.306 5.306 13 C -0.030 4.030 14 H 0.051 0.949 15 C -0.069 4.069 16 N -0.273 5.273 17 C -0.127 4.127 18 C -0.077 4.077 19 C -0.127 4.127 20 H 0.098 0.902 21 C -0.193 4.193 22 H 0.052 0.948 23 H 0.041 0.959 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.152 0.848 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.284 -1.430 13.405 13.876 hybrid contribution -0.455 -0.757 -1.191 1.482 sum 2.829 -2.187 12.215 12.727 Atomic orbital electron populations 1.22230 1.00058 0.99223 0.99920 1.18911 0.89927 0.92550 0.87551 0.98319 1.21451 1.30425 1.12432 0.91061 0.92718 1.25727 0.95489 0.95860 1.01924 1.70012 1.38070 1.24262 1.23973 0.85518 0.78787 0.78220 0.78844 1.19996 1.21019 1.19564 1.60639 1.57675 1.09211 1.03068 1.22602 0.95572 0.94055 0.90752 0.94913 1.22820 0.97250 0.97623 0.89204 1.63537 1.10636 1.50236 1.02843 1.22579 0.87412 1.00235 1.02446 1.22918 0.97339 0.92309 0.95133 1.22466 0.98355 0.98491 0.93414 0.90178 1.21704 0.94282 1.01600 1.01685 0.94789 0.95898 0.92041 0.93017 0.84827 0.93102 0.93754 0.95375 0.91726 0.89475 0.90934 0.89766 0.92812 0.93090 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.59 8.93 71.98 0.64 -6.95 16 2 C 0.22 11.29 2.46 44.17 0.11 11.40 16 3 H 0.00 -0.07 7.76 -2.39 -0.02 -0.08 16 4 C -0.52 -29.01 8.84 25.60 0.23 -28.79 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.45 5.30 84.66 0.45 0.90 16 7 N -0.92 -54.03 11.32 21.45 0.24 -53.79 16 8 Si 0.96 44.47 29.54 68.60 2.03 46.49 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 N -0.68 -28.79 6.11 -466.25 -2.85 -31.64 16 13 C 0.08 2.98 2.54 46.30 0.12 3.09 16 14 H 0.03 1.32 7.14 -2.38 -0.02 1.30 16 15 C 0.06 2.17 6.27 86.77 0.54 2.72 16 16 N -0.55 -16.16 5.44 -911.73 -4.96 -21.13 16 17 C 0.02 0.51 9.12 127.69 1.16 1.67 16 18 C 0.05 1.25 6.49 86.65 0.56 1.81 16 19 C -0.11 -2.96 3.01 -9.61 -0.03 -2.99 16 20 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 21 C -0.14 -3.14 9.13 71.98 0.66 -2.48 16 22 H 0.03 1.57 8.13 -2.39 -0.02 1.55 16 23 H 0.02 0.99 7.45 -2.39 -0.02 0.98 16 24 H 0.06 3.37 6.07 -2.38 -0.01 3.35 16 25 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 26 H 0.33 13.31 8.27 -89.69 -0.74 12.56 16 27 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.04 1.70 7.78 -2.39 -0.02 1.68 16 29 H 0.03 0.65 8.10 -2.39 -0.02 0.63 16 30 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.49 7.58 -2.39 -0.02 1.47 16 33 H 0.08 1.92 7.82 -2.39 -0.02 1.90 16 34 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 35 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -60.80 285.02 -0.81 -61.61 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.29 Total: 18.06 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 4.44 Total: -19.60 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -7.57 Total: -106.56 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -60.80 -0.81 -61.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306435940.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.933 kcal (2) G-P(sol) polarization free energy of solvation -60.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds