Wall clock time and date at job start Mon Mar 30 2020 02:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.28625 * 2 1 4 4 C 1.54379 * 110.32844 * 237.76020 * 2 1 3 5 5 N 1.48551 * 104.59550 * 264.95672 * 4 2 1 6 6 C 1.46903 * 111.00132 * 200.95650 * 5 4 2 7 7 C 1.50698 * 109.47305 * 290.12621 * 6 5 4 8 8 H 1.08001 * 119.99857 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99891 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00318 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99900 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46834 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47066 * 120.00173 * 11 9 7 14 14 H 1.48503 * 109.47021 * 240.00454 * 11 9 7 15 15 C 1.48829 * 104.23892 * 320.49134 * 5 4 2 16 16 C 1.54266 * 110.32180 * 122.12020 * 2 1 3 17 17 C 1.52997 * 110.32413 * 0.02562 * 16 2 1 18 18 C 1.52996 * 110.32551 * 237.89543 * 16 2 1 19 19 N 1.46896 * 109.47374 * 181.42866 * 18 16 2 20 20 H 1.08992 * 109.47329 * 297.87354 * 1 2 3 21 21 H 1.08995 * 109.46775 * 57.87949 * 1 2 3 22 22 H 1.09008 * 109.46802 * 177.87537 * 1 2 3 23 23 H 1.08998 * 110.40743 * 23.73558 * 4 2 1 24 24 H 1.09002 * 110.40696 * 146.05737 * 4 2 1 25 25 H 1.09006 * 109.46900 * 50.13037 * 6 5 4 26 26 H 1.08998 * 109.47099 * 170.12446 * 6 5 4 27 27 H 0.96996 * 119.99619 * 179.97438 * 10 9 7 28 28 H 1.08997 * 110.44614 * 280.77518 * 15 5 4 29 29 H 1.08998 * 110.49365 * 158.24916 * 15 5 4 30 30 H 1.09002 * 109.47153 * 298.56927 * 17 16 2 31 31 H 1.09001 * 109.46832 * 178.57118 * 17 16 2 32 32 H 1.09004 * 109.47261 * 58.57099 * 17 16 2 33 33 H 1.08995 * 109.47388 * 301.43177 * 18 16 2 34 34 H 1.09001 * 109.47014 * 61.42668 * 18 16 2 35 35 H 1.00894 * 111.00429 * 180.02562 * 19 18 16 36 36 H 1.00898 * 110.99768 * 303.95898 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0663 -0.7723 -1.2244 5 7 2.3149 -2.1473 -0.7203 6 6 3.2651 -2.8610 -1.5839 7 6 2.6107 -3.1657 -2.9067 8 1 1.5910 -2.8595 -3.0879 9 6 3.3140 -3.8345 -3.8859 10 7 4.5559 -4.2070 -3.6654 11 14 2.5030 -4.2116 -5.5259 12 1 1.1123 -3.6911 -5.5217 13 1 3.2715 -3.5634 -6.6188 14 1 2.4804 -5.6809 -5.7407 15 6 2.8823 -1.9415 0.6401 16 6 2.0658 -0.7692 1.2252 17 6 0.9049 -1.2996 2.0689 18 6 2.9654 0.1359 2.0692 19 7 3.4919 -0.6240 3.2107 20 1 -0.3633 0.4804 0.9084 21 1 -0.3633 0.5464 -0.8703 22 1 -0.3633 -1.0271 -0.0381 23 1 1.3214 -0.7879 -2.0200 24 1 2.9931 -0.3228 -1.5812 25 1 4.1447 -2.2385 -1.7484 26 1 3.5640 -3.7925 -1.1033 27 1 5.0505 -4.6778 -4.3543 28 1 3.9374 -1.6754 0.5763 29 1 2.7512 -2.8368 1.2478 30 1 0.3087 -0.4631 2.4334 31 1 1.2985 -1.8616 2.9159 32 1 0.2805 -1.9521 1.4585 33 1 3.7938 0.4957 1.4590 34 1 2.3871 0.9850 2.4336 35 1 4.0893 -0.0477 3.7842 36 1 2.7426 -1.0228 3.7562 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306537727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:06 Heat of formation + Delta-G solvation = -5.729365 kcal Electronic energy + Delta-G solvation = -14926.612327 eV Core-core repulsion = 12638.050957 eV Total energy + Delta-G solvation = -2288.561370 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.36646 -34.98416 -33.16090 -31.91063 -29.76326 -27.62501 -26.01202 -25.11964 -23.55413 -21.38261 -19.89494 -18.19280 -16.32762 -16.01598 -15.07842 -14.64669 -14.36435 -14.06315 -13.65839 -13.23590 -12.85493 -12.61650 -12.52046 -11.91808 -11.50515 -11.32186 -11.15464 -11.01668 -10.87793 -10.51317 -10.40819 -10.12161 -10.01272 -9.91903 -9.71687 -9.06539 -8.58399 -8.37678 -7.25108 -5.96881 -3.97814 3.34280 3.41308 3.46612 4.47765 4.58208 4.90940 5.03134 5.12916 5.36873 5.43307 5.51168 5.58273 5.69263 5.76782 5.78474 6.03209 6.04717 6.18181 6.25428 6.38253 6.44486 6.56167 6.59454 6.70585 6.80712 6.83651 7.18060 7.30284 7.40536 7.47545 7.85573 8.09447 8.28084 8.60422 9.10688 9.66246 11.14303 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045334 B = 0.007791 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.488412 B = 3592.912115 C = 3951.906969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.063 0.937 4 C 0.052 3.948 5 N -0.508 5.508 6 C 0.183 3.817 7 C -0.503 4.503 8 H 0.062 0.938 9 C 0.053 3.947 10 N -0.899 5.899 11 Si 0.897 3.103 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.055 3.945 16 C -0.061 4.061 17 C -0.134 4.134 18 C 0.076 3.924 19 N -0.847 5.847 20 H 0.046 0.954 21 H 0.047 0.953 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.033 0.967 25 H -0.008 1.008 26 H 0.029 0.971 27 H 0.260 0.740 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.021 0.979 35 H 0.335 0.665 36 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.376 9.071 11.057 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 H 0.082 0.918 4 C -0.077 4.077 5 N -0.233 5.233 6 C 0.057 3.943 7 C -0.542 4.542 8 H 0.080 0.920 9 C -0.147 4.147 10 N -0.539 5.539 11 Si 0.725 3.275 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.210 1.210 15 C -0.073 4.073 16 C -0.062 4.062 17 C -0.191 4.191 18 C -0.055 4.055 19 N -0.377 5.377 20 H 0.065 0.935 21 H 0.066 0.934 22 H 0.086 0.914 23 H 0.094 0.906 24 H 0.051 0.949 25 H 0.009 0.991 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.147 0.853 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.366 8.175 10.415 14.286 hybrid contribution 0.094 0.909 -0.433 1.011 sum -5.272 9.084 9.982 14.490 Atomic orbital electron populations 1.21860 0.94975 1.02372 1.00183 1.21984 0.96051 0.98016 0.95024 0.91826 1.22934 0.99339 0.89753 0.95641 1.65534 1.43052 1.13235 1.01441 1.19853 0.89399 0.93388 0.91683 1.21191 0.99320 1.35935 0.97749 0.91957 1.25002 0.94890 0.96001 0.98855 1.69979 1.09586 1.40196 1.34163 0.86460 0.79504 0.77962 0.83612 1.19697 1.21169 1.21039 1.22993 0.95857 0.96393 0.92058 1.21340 0.94949 0.95516 0.94366 1.21901 0.97670 1.00371 0.99195 1.21885 0.97291 0.93714 0.92609 1.58688 1.25361 1.40000 1.13692 0.93488 0.93395 0.91449 0.90649 0.94906 0.99065 0.95265 0.93066 0.94559 0.91225 0.93506 0.93199 0.91177 0.91294 0.96073 0.85273 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.92 37.16 0.29 -1.59 16 2 C -0.09 -1.41 3.30 -89.23 -0.29 -1.71 16 3 H 0.06 0.90 7.71 -51.93 -0.40 0.50 16 4 C 0.05 1.04 5.51 -2.19 -0.01 1.02 16 5 N -0.51 -11.43 5.37 -231.18 -1.24 -12.67 16 6 C 0.18 4.97 4.57 -4.98 -0.02 4.95 16 7 C -0.50 -14.61 8.82 -34.44 -0.30 -14.91 16 8 H 0.06 1.79 7.61 -52.49 -0.40 1.39 16 9 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 11 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 15 C 0.06 1.06 5.31 -2.03 -0.01 1.05 16 16 C -0.06 -0.91 0.82 -153.12 -0.13 -1.03 16 17 C -0.13 -1.76 6.92 37.16 0.26 -1.51 16 18 C 0.08 0.98 5.45 -3.83 -0.02 0.96 16 19 N -0.85 -9.90 9.30 -10.37 -0.10 -10.00 16 20 H 0.05 0.55 6.84 -51.93 -0.36 0.20 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.07 1.02 6.76 -51.92 -0.35 0.67 16 23 H 0.08 1.56 7.66 -51.93 -0.40 1.16 16 24 H 0.03 0.69 7.83 -51.93 -0.41 0.28 16 25 H -0.01 -0.25 7.88 -51.93 -0.41 -0.66 16 26 H 0.03 0.86 8.13 -51.93 -0.42 0.43 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.04 0.75 7.71 -51.93 -0.40 0.35 16 29 H 0.07 1.35 7.86 -51.93 -0.41 0.95 16 30 H 0.05 0.53 6.88 -51.93 -0.36 0.18 16 31 H 0.05 0.61 6.60 -51.93 -0.34 0.26 16 32 H 0.07 1.03 6.71 -51.93 -0.35 0.68 16 33 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 34 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.34 3.19 9.08 -39.30 -0.36 2.83 16 36 H 0.34 3.56 7.07 -39.29 -0.28 3.28 16 LS Contribution 277.92 15.07 4.19 4.19 Total: -1.00 -30.68 277.92 -7.80 -38.48 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.03 Total: 0.91 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.34 Total: -11.30 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.60 Total: -49.39 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.68 -7.80 -38.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306537727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.754 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds