Wall clock time and date at job start Mon Mar 30 2020 02:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.28625 * 2 1 4 4 C 1.54379 * 110.32844 * 237.76020 * 2 1 3 5 5 N 1.48551 * 104.59550 * 264.95672 * 4 2 1 6 6 C 1.46903 * 111.00132 * 200.95650 * 5 4 2 7 7 C 1.50698 * 109.47305 * 290.12621 * 6 5 4 8 8 H 1.08001 * 119.99857 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99891 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00318 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99900 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46834 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47066 * 120.00173 * 11 9 7 14 14 H 1.48503 * 109.47021 * 240.00454 * 11 9 7 15 15 C 1.48829 * 104.23892 * 320.49134 * 5 4 2 16 16 C 1.54266 * 110.32180 * 122.12020 * 2 1 3 17 17 C 1.52997 * 110.32413 * 0.02562 * 16 2 1 18 18 C 1.52996 * 110.32551 * 237.89543 * 16 2 1 19 19 N 1.46896 * 109.47374 * 181.42866 * 18 16 2 20 20 H 1.08992 * 109.47329 * 297.87354 * 1 2 3 21 21 H 1.08995 * 109.46775 * 57.87949 * 1 2 3 22 22 H 1.09008 * 109.46802 * 177.87537 * 1 2 3 23 23 H 1.08998 * 110.40743 * 23.73558 * 4 2 1 24 24 H 1.09002 * 110.40696 * 146.05737 * 4 2 1 25 25 H 1.09006 * 109.46900 * 50.13037 * 6 5 4 26 26 H 1.08998 * 109.47099 * 170.12446 * 6 5 4 27 27 H 0.96996 * 119.99619 * 179.97438 * 10 9 7 28 28 H 1.08997 * 110.44614 * 280.77518 * 15 5 4 29 29 H 1.08998 * 110.49365 * 158.24916 * 15 5 4 30 30 H 1.09002 * 109.47153 * 298.56927 * 17 16 2 31 31 H 1.09001 * 109.46832 * 178.57118 * 17 16 2 32 32 H 1.09004 * 109.47261 * 58.57099 * 17 16 2 33 33 H 1.08995 * 109.47388 * 301.43177 * 18 16 2 34 34 H 1.09001 * 109.47014 * 61.42668 * 18 16 2 35 35 H 1.00894 * 111.00429 * 180.02562 * 19 18 16 36 36 H 1.00898 * 110.99768 * 303.95898 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0663 -0.7723 -1.2244 5 7 2.3149 -2.1473 -0.7203 6 6 3.2651 -2.8610 -1.5839 7 6 2.6107 -3.1657 -2.9067 8 1 1.5910 -2.8595 -3.0879 9 6 3.3140 -3.8345 -3.8859 10 7 4.5559 -4.2070 -3.6654 11 14 2.5030 -4.2116 -5.5259 12 1 1.1123 -3.6911 -5.5217 13 1 3.2715 -3.5634 -6.6188 14 1 2.4804 -5.6809 -5.7407 15 6 2.8823 -1.9415 0.6401 16 6 2.0658 -0.7692 1.2252 17 6 0.9049 -1.2996 2.0689 18 6 2.9654 0.1359 2.0692 19 7 3.4919 -0.6240 3.2107 20 1 -0.3633 0.4804 0.9084 21 1 -0.3633 0.5464 -0.8703 22 1 -0.3633 -1.0271 -0.0381 23 1 1.3214 -0.7879 -2.0200 24 1 2.9931 -0.3228 -1.5812 25 1 4.1447 -2.2385 -1.7484 26 1 3.5640 -3.7925 -1.1033 27 1 5.0505 -4.6778 -4.3543 28 1 3.9374 -1.6754 0.5763 29 1 2.7512 -2.8368 1.2478 30 1 0.3087 -0.4631 2.4334 31 1 1.2985 -1.8616 2.9159 32 1 0.2805 -1.9521 1.4585 33 1 3.7938 0.4957 1.4590 34 1 2.3871 0.9850 2.4336 35 1 4.0893 -0.0477 3.7842 36 1 2.7426 -1.0228 3.7562 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306537727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:06 Heat of formation + Delta-G solvation = -29.171762 kcal Electronic energy + Delta-G solvation = -14927.628865 eV Core-core repulsion = 12638.050957 eV Total energy + Delta-G solvation = -2289.577908 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.77875 -36.52697 -34.85129 -33.65824 -31.01101 -29.47582 -27.41147 -26.50603 -25.29883 -23.01089 -21.54237 -19.54586 -18.33538 -17.37629 -16.66317 -16.37697 -15.68433 -15.47820 -14.82537 -14.74593 -14.47702 -14.24870 -13.96060 -13.48108 -13.19603 -12.91235 -12.61057 -12.57628 -12.46168 -12.27867 -12.10053 -11.68543 -11.43470 -11.32182 -11.22183 -11.10459 -10.64033 -9.49325 -9.14972 -8.22890 -6.34007 1.38671 1.39931 1.53937 2.38814 3.09106 3.41507 3.54593 3.72281 3.95088 4.05794 4.33278 4.38783 4.43818 4.60612 4.72946 4.75952 4.81868 4.90927 4.96068 4.98527 5.07839 5.08927 5.18493 5.26506 5.35330 5.37309 5.44950 5.61725 5.69885 5.99951 6.25460 6.33775 6.52643 6.70165 6.82501 7.36219 8.89103 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045334 B = 0.007791 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.488412 B = 3592.912115 C = 3951.906969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.083 4.083 3 H 0.085 0.915 4 C 0.049 3.951 5 N -0.516 5.516 6 C 0.200 3.800 7 C -0.523 4.523 8 H 0.061 0.939 9 C -0.002 4.002 10 N -0.936 5.936 11 Si 0.974 3.026 12 H -0.263 1.263 13 H -0.276 1.276 14 H -0.276 1.276 15 C 0.056 3.944 16 C -0.053 4.053 17 C -0.129 4.129 18 C 0.082 3.918 19 N -0.859 5.859 20 H 0.077 0.923 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.012 0.988 25 H -0.042 1.042 26 H -0.003 1.003 27 H 0.265 0.735 28 H 0.015 0.985 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.349 0.651 36 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.147 10.381 11.716 17.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.103 4.103 3 H 0.104 0.896 4 C -0.080 4.080 5 N -0.240 5.240 6 C 0.073 3.927 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.199 4.199 10 N -0.577 5.577 11 Si 0.798 3.202 12 H -0.186 1.186 13 H -0.202 1.202 14 H -0.202 1.202 15 C -0.072 4.072 16 C -0.054 4.054 17 C -0.186 4.186 18 C -0.049 4.049 19 N -0.392 5.392 20 H 0.096 0.904 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.031 0.969 25 H -0.024 1.024 26 H 0.015 0.985 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.163 0.837 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.145 9.499 11.102 16.265 hybrid contribution 0.702 0.487 -0.598 1.043 sum -6.443 9.986 10.505 15.861 Atomic orbital electron populations 1.21822 0.93097 1.01834 1.02098 1.21980 0.97507 0.98257 0.92511 0.89641 1.22978 0.98326 0.88872 0.97774 1.65426 1.41480 1.14807 1.02301 1.19482 0.89181 0.91940 0.92138 1.21462 0.99419 1.36508 0.98756 0.92031 1.25999 0.95419 0.95403 1.03113 1.70112 1.11167 1.40641 1.35750 0.85268 0.78753 0.78016 0.78178 1.18648 1.20196 1.20181 1.23030 0.95439 0.98316 0.90460 1.21320 0.95431 0.93905 0.94745 1.21855 0.96756 1.01215 0.98781 1.21748 0.96670 0.93942 0.92528 1.58611 1.26097 1.40553 1.13967 0.90395 0.92765 0.93125 0.91715 0.96921 1.02396 0.98511 0.92631 0.96710 0.91879 0.90557 0.92208 0.92922 0.92787 0.93194 0.83694 0.83746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 7.92 71.98 0.57 -2.67 16 2 C -0.08 -2.43 3.30 -9.90 -0.03 -2.46 16 3 H 0.09 2.17 7.71 -2.38 -0.02 2.15 16 4 C 0.05 1.99 5.51 86.45 0.48 2.47 16 5 N -0.52 -24.13 5.37 -885.31 -4.75 -28.88 16 6 C 0.20 11.52 4.57 85.56 0.39 11.91 16 7 C -0.52 -31.35 8.82 25.60 0.23 -31.13 16 8 H 0.06 3.62 7.61 -2.91 -0.02 3.60 16 9 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 10 N -0.94 -58.72 13.29 21.45 0.28 -58.43 16 11 Si 0.97 45.76 29.54 68.60 2.03 47.79 16 12 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 C 0.06 2.20 5.31 86.40 0.46 2.65 16 16 C -0.05 -1.50 0.82 -51.29 -0.04 -1.54 16 17 C -0.13 -3.02 6.92 71.98 0.50 -2.52 16 18 C 0.08 1.92 5.45 86.30 0.47 2.39 16 19 N -0.86 -18.21 9.30 -186.73 -1.74 -19.95 16 20 H 0.08 1.47 6.84 -2.39 -0.02 1.45 16 21 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.05 1.43 6.76 -2.38 -0.02 1.41 16 23 H 0.06 2.73 7.66 -2.39 -0.02 2.71 16 24 H 0.01 0.55 7.83 -2.39 -0.02 0.53 16 25 H -0.04 -2.61 7.88 -2.38 -0.02 -2.63 16 26 H 0.00 -0.20 8.13 -2.39 -0.02 -0.22 16 27 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.01 0.63 7.71 -2.39 -0.02 0.61 16 29 H 0.06 2.52 7.86 -2.39 -0.02 2.50 16 30 H 0.08 1.37 6.88 -2.39 -0.02 1.36 16 31 H 0.06 1.29 6.60 -2.39 -0.02 1.27 16 32 H 0.05 1.44 6.71 -2.38 -0.02 1.42 16 33 H 0.05 1.43 8.12 -2.39 -0.02 1.41 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.35 5.81 9.08 -89.70 -0.81 5.00 16 36 H 0.35 6.32 7.07 -89.70 -0.63 5.68 16 Total: -1.00 -68.63 277.92 -1.09 -69.72 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -0.39 Total: 10.30 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 3.48 Total: -20.54 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -6.20 Total: -107.26 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -68.63 -1.09 -69.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306537727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.547 kcal (2) G-P(sol) polarization free energy of solvation -68.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds