Wall clock time and date at job start Mon Mar 30 2020 02:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.28595 * 2 1 4 4 C 1.54374 * 110.32155 * 122.12782 * 2 1 3 5 5 N 1.48557 * 104.59752 * 95.14547 * 4 2 1 6 6 C 1.46895 * 111.00514 * 159.03426 * 5 4 2 7 7 C 1.50702 * 109.46770 * 69.87293 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72214 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48501 * 109.47188 * 90.00793 * 11 9 7 13 13 H 1.48501 * 109.47085 * 210.00372 * 11 9 7 14 14 H 1.48498 * 109.47634 * 330.00608 * 11 9 7 15 15 C 1.48571 * 104.22096 * 39.47944 * 5 4 2 16 16 C 1.54255 * 110.40625 * 237.81620 * 2 1 3 17 17 C 1.53002 * 110.32776 * 0.05546 * 16 2 1 18 18 C 1.52996 * 110.32562 * 122.16446 * 16 2 1 19 19 N 1.46901 * 109.47454 * 179.97438 * 18 16 2 20 20 H 1.09002 * 109.47004 * 299.32625 * 1 2 3 21 21 H 1.09001 * 109.46894 * 59.32421 * 1 2 3 22 22 H 1.08997 * 109.46852 * 179.32927 * 1 2 3 23 23 H 1.08993 * 110.41462 * 336.36394 * 4 2 1 24 24 H 1.09005 * 110.40739 * 213.91756 * 4 2 1 25 25 H 1.09004 * 109.47258 * 309.87617 * 6 5 4 26 26 H 1.08994 * 109.47601 * 189.87209 * 6 5 4 27 27 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 28 28 H 1.08995 * 110.40686 * 79.29633 * 15 5 4 29 29 H 1.08997 * 110.41031 * 201.74410 * 15 5 4 30 30 H 1.08998 * 109.46924 * 60.00284 * 17 16 2 31 31 H 1.08996 * 109.47166 * 180.02562 * 17 16 2 32 32 H 1.08995 * 109.47121 * 300.00250 * 17 16 2 33 33 H 1.09001 * 109.47160 * 299.99483 * 18 16 2 34 34 H 1.09003 * 109.47057 * 60.00077 * 18 16 2 35 35 H 1.00906 * 110.99919 * 56.04546 * 19 18 16 36 36 H 1.00898 * 110.99973 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0662 -0.7699 1.2260 5 7 2.3171 -2.1453 0.7239 6 6 3.2676 -2.8565 1.5892 7 6 2.6123 -3.1603 2.9119 8 1 1.5918 -2.8559 3.0916 9 6 3.3137 -3.8323 3.8905 10 7 4.5563 -4.2033 3.6716 11 14 2.4989 -4.2156 5.5271 12 1 1.8282 -5.5382 5.4484 13 1 3.5280 -4.2455 6.5973 14 1 1.4930 -3.1681 5.8367 15 6 2.8840 -1.9405 -0.6340 16 6 2.0679 -0.7701 -1.2236 17 6 0.9086 -1.3007 -2.0693 18 6 2.9690 0.1344 -2.0667 19 7 3.4708 -0.6169 -3.2251 20 1 -0.3633 0.5033 0.8960 21 1 -0.3633 0.5243 -0.8839 22 1 -0.3633 -1.0276 -0.0120 23 1 1.3207 -0.7855 2.0209 24 1 2.9932 -0.3201 1.5816 25 1 4.1461 -2.2326 1.7538 26 1 3.5682 -3.7882 1.1102 27 1 5.0498 -4.6758 4.3602 28 1 3.9388 -1.6739 -0.5693 29 1 2.7540 -2.8375 -1.2395 30 1 0.2988 -0.4657 -2.4145 31 1 1.3038 -1.8421 -2.9288 32 1 0.2971 -1.9725 -1.4670 33 1 2.3980 0.9962 -2.4119 34 1 3.8102 0.4741 -1.4624 35 1 2.7092 -0.9979 -3.7664 36 1 4.0687 -0.0407 -3.7983 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306537728.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:09 Heat of formation + Delta-G solvation = -5.472765 kcal Electronic energy + Delta-G solvation = -14925.669290 eV Core-core repulsion = 12637.119048 eV Total energy + Delta-G solvation = -2288.550243 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.37741 -34.99720 -33.15891 -31.91378 -29.76020 -27.63020 -26.02111 -25.12921 -23.54340 -21.38234 -19.89661 -18.19239 -16.33870 -16.01919 -15.07983 -14.65551 -14.35195 -14.06649 -13.66460 -13.23253 -12.85277 -12.62116 -12.51766 -11.92086 -11.50776 -11.31433 -11.15240 -11.02857 -10.86610 -10.52693 -10.40891 -10.12201 -10.01113 -9.92129 -9.71401 -9.08240 -8.58482 -8.37053 -7.25107 -5.96774 -3.97736 3.35676 3.41149 3.45056 4.47753 4.58076 4.91086 5.03343 5.12456 5.36841 5.43593 5.50927 5.57894 5.69340 5.77399 5.78067 6.03322 6.04748 6.18135 6.25661 6.37914 6.44472 6.55946 6.59176 6.70601 6.80589 6.83674 7.18041 7.30452 7.40381 7.47353 7.85492 8.09527 8.28104 8.60683 9.10389 9.66187 11.14376 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045466 B = 0.007779 C = 0.007077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.690486 B = 3598.345153 C = 3955.571014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.063 0.937 4 C 0.052 3.948 5 N -0.509 5.509 6 C 0.183 3.817 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.055 3.945 16 C -0.060 4.060 17 C -0.134 4.134 18 C 0.076 3.924 19 N -0.847 5.847 20 H 0.048 0.952 21 H 0.045 0.955 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.033 0.967 25 H -0.008 1.008 26 H 0.029 0.971 27 H 0.260 0.740 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.021 0.979 34 H 0.069 0.931 35 H 0.339 0.661 36 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.372 9.066 -11.044 15.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 H 0.082 0.918 4 C -0.077 4.077 5 N -0.233 5.233 6 C 0.057 3.943 7 C -0.543 4.543 8 H 0.080 0.920 9 C -0.147 4.147 10 N -0.539 5.539 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.073 4.073 16 C -0.061 4.061 17 C -0.191 4.191 18 C -0.055 4.055 19 N -0.378 5.378 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.086 0.914 23 H 0.094 0.906 24 H 0.051 0.949 25 H 0.009 0.991 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.039 0.961 34 H 0.087 0.913 35 H 0.153 0.847 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.353 8.159 -10.410 14.268 hybrid contribution 0.076 0.914 0.442 1.018 sum -5.277 9.072 -9.968 14.474 Atomic orbital electron populations 1.21858 0.94963 1.02354 1.00192 1.21984 0.96051 0.98029 0.95039 0.91834 1.22943 0.99337 0.89743 0.95645 1.65457 1.43041 1.13344 1.01450 1.19845 0.89386 0.93402 0.91634 1.21157 0.99288 1.35995 0.97848 0.92012 1.25002 0.94892 0.95984 0.98851 1.69971 1.09563 1.40075 1.34314 0.86507 0.78952 0.78749 0.83243 1.20659 1.21370 1.19912 1.22951 0.95822 0.96449 0.92079 1.21334 0.94948 0.95503 0.94346 1.21895 0.97621 1.00455 0.99176 1.21887 0.97483 0.93722 0.92412 1.58703 1.25067 1.41179 1.12820 0.93339 0.93575 0.91433 0.90635 0.94900 0.99065 0.95274 0.93009 0.94628 0.91231 0.93466 0.93162 0.91196 0.96064 0.91285 0.84730 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.92 37.16 0.29 -1.59 16 2 C -0.09 -1.42 3.30 -89.24 -0.29 -1.71 16 3 H 0.06 0.90 7.71 -51.93 -0.40 0.50 16 4 C 0.05 1.04 5.51 -2.19 -0.01 1.02 16 5 N -0.51 -11.44 5.36 -231.41 -1.24 -12.68 16 6 C 0.18 4.99 4.57 -4.98 -0.02 4.97 16 7 C -0.50 -14.64 8.82 -34.44 -0.30 -14.94 16 8 H 0.06 1.77 7.61 -52.49 -0.40 1.38 16 9 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 11 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.06 1.07 5.34 -2.17 -0.01 1.05 16 16 C -0.06 -0.90 0.82 -153.13 -0.13 -1.03 16 17 C -0.13 -1.76 6.93 37.16 0.26 -1.51 16 18 C 0.08 0.98 5.46 -3.83 -0.02 0.96 16 19 N -0.85 -9.89 9.33 -10.37 -0.10 -9.99 16 20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.05 0.54 6.98 -51.93 -0.36 0.18 16 22 H 0.07 1.02 6.63 -51.93 -0.34 0.67 16 23 H 0.08 1.56 7.66 -51.93 -0.40 1.17 16 24 H 0.03 0.69 7.82 -51.93 -0.41 0.29 16 25 H -0.01 -0.25 7.88 -51.93 -0.41 -0.65 16 26 H 0.03 0.85 8.13 -51.93 -0.42 0.43 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.04 0.73 7.68 -51.93 -0.40 0.33 16 29 H 0.07 1.35 7.86 -51.93 -0.41 0.95 16 30 H 0.05 0.54 6.88 -51.93 -0.36 0.18 16 31 H 0.05 0.61 6.51 -51.93 -0.34 0.27 16 32 H 0.07 1.03 6.73 -51.93 -0.35 0.68 16 33 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.97 8.10 -51.93 -0.42 0.54 16 35 H 0.34 3.55 6.99 -39.29 -0.27 3.27 16 36 H 0.34 3.18 9.08 -39.29 -0.36 2.83 16 LS Contribution 277.80 15.07 4.19 4.19 Total: -1.00 -30.65 277.80 -7.80 -38.45 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.03 Total: 0.94 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -0.34 Total: -11.30 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.60 Total: -49.40 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.65 -7.80 -38.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306537728.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.975 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds