Wall clock time and date at job start Mon Mar 30 2020 02:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.28595 * 2 1 4 4 C 1.54374 * 110.32155 * 122.12782 * 2 1 3 5 5 N 1.48557 * 104.59752 * 95.14547 * 4 2 1 6 6 C 1.46895 * 111.00514 * 159.03426 * 5 4 2 7 7 C 1.50702 * 109.46770 * 69.87293 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72214 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48501 * 109.47188 * 90.00793 * 11 9 7 13 13 H 1.48501 * 109.47085 * 210.00372 * 11 9 7 14 14 H 1.48498 * 109.47634 * 330.00608 * 11 9 7 15 15 C 1.48571 * 104.22096 * 39.47944 * 5 4 2 16 16 C 1.54255 * 110.40625 * 237.81620 * 2 1 3 17 17 C 1.53002 * 110.32776 * 0.05546 * 16 2 1 18 18 C 1.52996 * 110.32562 * 122.16446 * 16 2 1 19 19 N 1.46901 * 109.47454 * 179.97438 * 18 16 2 20 20 H 1.09002 * 109.47004 * 299.32625 * 1 2 3 21 21 H 1.09001 * 109.46894 * 59.32421 * 1 2 3 22 22 H 1.08997 * 109.46852 * 179.32927 * 1 2 3 23 23 H 1.08993 * 110.41462 * 336.36394 * 4 2 1 24 24 H 1.09005 * 110.40739 * 213.91756 * 4 2 1 25 25 H 1.09004 * 109.47258 * 309.87617 * 6 5 4 26 26 H 1.08994 * 109.47601 * 189.87209 * 6 5 4 27 27 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 28 28 H 1.08995 * 110.40686 * 79.29633 * 15 5 4 29 29 H 1.08997 * 110.41031 * 201.74410 * 15 5 4 30 30 H 1.08998 * 109.46924 * 60.00284 * 17 16 2 31 31 H 1.08996 * 109.47166 * 180.02562 * 17 16 2 32 32 H 1.08995 * 109.47121 * 300.00250 * 17 16 2 33 33 H 1.09001 * 109.47160 * 299.99483 * 18 16 2 34 34 H 1.09003 * 109.47057 * 60.00077 * 18 16 2 35 35 H 1.00906 * 110.99919 * 56.04546 * 19 18 16 36 36 H 1.00898 * 110.99973 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0662 -0.7699 1.2260 5 7 2.3171 -2.1453 0.7239 6 6 3.2676 -2.8565 1.5892 7 6 2.6123 -3.1603 2.9119 8 1 1.5918 -2.8559 3.0916 9 6 3.3137 -3.8323 3.8905 10 7 4.5563 -4.2033 3.6716 11 14 2.4989 -4.2156 5.5271 12 1 1.8282 -5.5382 5.4484 13 1 3.5280 -4.2455 6.5973 14 1 1.4930 -3.1681 5.8367 15 6 2.8840 -1.9405 -0.6340 16 6 2.0679 -0.7701 -1.2236 17 6 0.9086 -1.3007 -2.0693 18 6 2.9690 0.1344 -2.0667 19 7 3.4708 -0.6169 -3.2251 20 1 -0.3633 0.5033 0.8960 21 1 -0.3633 0.5243 -0.8839 22 1 -0.3633 -1.0276 -0.0120 23 1 1.3207 -0.7855 2.0209 24 1 2.9932 -0.3201 1.5816 25 1 4.1461 -2.2326 1.7538 26 1 3.5682 -3.7882 1.1102 27 1 5.0498 -4.6758 4.3602 28 1 3.9388 -1.6739 -0.5693 29 1 2.7540 -2.8375 -1.2395 30 1 0.2988 -0.4657 -2.4145 31 1 1.3038 -1.8421 -2.9288 32 1 0.2971 -1.9725 -1.4670 33 1 2.3980 0.9962 -2.4119 34 1 3.8102 0.4741 -1.4624 35 1 2.7092 -0.9979 -3.7664 36 1 4.0687 -0.0407 -3.7983 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306537728.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:09 Heat of formation + Delta-G solvation = -28.889374 kcal Electronic energy + Delta-G solvation = -14926.684711 eV Core-core repulsion = 12637.119048 eV Total energy + Delta-G solvation = -2289.565663 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.79194 -36.53740 -34.85299 -33.65914 -31.00966 -29.47784 -27.42262 -26.51627 -25.29063 -23.00883 -21.54551 -19.54624 -18.33263 -17.38800 -16.66779 -16.38542 -15.69066 -15.46963 -14.83647 -14.74123 -14.47460 -14.24001 -13.96335 -13.48080 -13.19265 -12.91848 -12.61442 -12.56465 -12.46152 -12.28778 -12.09858 -11.68679 -11.44172 -11.32560 -11.22013 -11.11767 -10.63215 -9.49488 -9.14972 -8.22779 -6.33946 1.38760 1.41434 1.52508 2.38878 3.09174 3.41498 3.54501 3.72394 3.94813 4.05431 4.32987 4.38439 4.43530 4.61051 4.73000 4.75771 4.81708 4.90951 4.95896 4.98605 5.07399 5.08972 5.18200 5.26595 5.35338 5.36890 5.44818 5.61571 5.70032 6.00016 6.25348 6.33651 6.53109 6.70072 6.82230 7.36161 8.89016 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045466 B = 0.007779 C = 0.007077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.690486 B = 3598.345153 C = 3955.571014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.083 4.083 3 H 0.085 0.915 4 C 0.049 3.951 5 N -0.516 5.516 6 C 0.200 3.800 7 C -0.524 4.524 8 H 0.062 0.938 9 C -0.001 4.001 10 N -0.936 5.936 11 Si 0.974 3.026 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.263 1.263 15 C 0.056 3.944 16 C -0.053 4.053 17 C -0.129 4.129 18 C 0.082 3.918 19 N -0.859 5.859 20 H 0.053 0.947 21 H 0.077 0.923 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.012 0.988 25 H -0.042 1.042 26 H -0.003 1.003 27 H 0.265 0.735 28 H 0.014 0.986 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.348 0.652 36 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.173 10.375 -11.706 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.103 4.103 3 H 0.103 0.897 4 C -0.079 4.079 5 N -0.240 5.240 6 C 0.073 3.927 7 C -0.563 4.563 8 H 0.080 0.920 9 C -0.199 4.199 10 N -0.577 5.577 11 Si 0.798 3.202 12 H -0.197 1.197 13 H -0.205 1.205 14 H -0.187 1.187 15 C -0.073 4.073 16 C -0.054 4.054 17 C -0.186 4.186 18 C -0.049 4.049 19 N -0.392 5.392 20 H 0.072 0.928 21 H 0.096 0.904 22 H 0.070 0.930 23 H 0.083 0.917 24 H 0.031 0.969 25 H -0.024 1.024 26 H 0.015 0.985 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.163 0.837 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.164 9.482 -11.102 16.263 hybrid contribution 0.694 0.492 0.607 1.045 sum -6.471 9.974 -10.495 15.858 Atomic orbital electron populations 1.21822 0.93075 1.01942 1.02011 1.21981 0.97517 0.98266 0.92510 0.89657 1.22989 0.98320 0.88852 0.97788 1.65349 1.41462 1.14918 1.02292 1.19476 0.89177 0.91941 0.92105 1.21438 0.99421 1.36564 0.98844 0.92015 1.26001 0.95426 0.95388 1.03100 1.70108 1.11155 1.40526 1.35864 0.85316 0.78111 0.78930 0.77854 1.19675 1.20549 1.18739 1.22990 0.95412 0.98355 0.90503 1.21314 0.95430 0.93890 0.94723 1.21850 0.96745 1.01244 0.98767 1.21749 0.96809 0.93995 0.92342 1.58626 1.25825 1.41728 1.13057 0.92834 0.90431 0.92995 0.91701 0.96924 1.02391 0.98530 0.92627 0.96773 0.91913 0.90538 0.92136 0.92961 0.93195 0.92812 0.83713 0.83699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 7.92 71.98 0.57 -2.67 16 2 C -0.08 -2.43 3.30 -9.90 -0.03 -2.47 16 3 H 0.09 2.17 7.71 -2.39 -0.02 2.15 16 4 C 0.05 1.99 5.51 86.45 0.48 2.47 16 5 N -0.52 -24.13 5.36 -886.06 -4.75 -28.88 16 6 C 0.20 11.54 4.57 85.56 0.39 11.93 16 7 C -0.52 -31.42 8.82 25.60 0.23 -31.20 16 8 H 0.06 3.62 7.61 -2.91 -0.02 3.59 16 9 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 10 N -0.94 -58.73 13.29 21.45 0.28 -58.45 16 11 Si 0.97 45.74 29.54 68.60 2.03 47.77 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 15 C 0.06 2.19 5.34 86.45 0.46 2.66 16 16 C -0.05 -1.49 0.82 -51.29 -0.04 -1.53 16 17 C -0.13 -3.02 6.93 71.98 0.50 -2.52 16 18 C 0.08 1.92 5.46 86.30 0.47 2.39 16 19 N -0.86 -18.17 9.33 -186.72 -1.74 -19.92 16 20 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.08 1.45 6.98 -2.39 -0.02 1.44 16 22 H 0.05 1.45 6.63 -2.39 -0.02 1.44 16 23 H 0.06 2.74 7.66 -2.39 -0.02 2.72 16 24 H 0.01 0.55 7.82 -2.38 -0.02 0.53 16 25 H -0.04 -2.61 7.88 -2.38 -0.02 -2.63 16 26 H 0.00 -0.21 8.13 -2.39 -0.02 -0.23 16 27 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 28 H 0.01 0.61 7.68 -2.39 -0.02 0.59 16 29 H 0.06 2.51 7.86 -2.39 -0.02 2.50 16 30 H 0.08 1.38 6.88 -2.39 -0.02 1.36 16 31 H 0.06 1.30 6.51 -2.39 -0.02 1.28 16 32 H 0.05 1.43 6.73 -2.39 -0.02 1.42 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 35 H 0.35 6.29 6.99 -89.69 -0.63 5.66 16 36 H 0.35 5.80 9.08 -89.70 -0.81 4.98 16 Total: -1.00 -68.58 277.80 -1.08 -69.67 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -0.38 Total: 10.37 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 3.48 Total: -20.56 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -6.21 Total: -107.25 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -68.58 -1.08 -69.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306537728.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.777 kcal (2) G-P(sol) polarization free energy of solvation -68.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds