Wall clock time and date at job start Mon Mar 30 2020 02:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.37319 * 2 1 4 4 C 1.54376 * 110.32374 * 122.18306 * 2 1 3 5 5 N 1.48567 * 104.59755 * 142.75027 * 4 2 1 6 6 C 1.46894 * 110.99949 * 200.96331 * 5 4 2 7 7 C 1.50704 * 109.46990 * 175.72484 * 6 5 4 8 8 H 1.08002 * 119.99934 * 5.23037 * 7 6 5 9 9 C 1.37870 * 120.00012 * 185.23004 * 7 6 5 10 10 N 1.31518 * 120.00285 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00261 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47210 * 89.99856 * 11 9 7 13 13 H 1.48502 * 109.47089 * 210.00355 * 11 9 7 14 14 H 1.48498 * 109.46777 * 329.99922 * 11 9 7 15 15 C 1.48562 * 104.21625 * 320.51754 * 5 4 2 16 16 C 1.54261 * 110.32445 * 237.81897 * 2 1 3 17 17 C 1.52999 * 110.32534 * 122.20669 * 16 2 1 18 18 C 1.52998 * 110.32138 * 0.02562 * 16 2 1 19 19 N 1.46905 * 109.46831 * 180.02562 * 18 16 2 20 20 H 1.08997 * 109.47306 * 299.27351 * 1 2 3 21 21 H 1.09000 * 109.47254 * 59.26933 * 1 2 3 22 22 H 1.09000 * 109.47178 * 179.26870 * 1 2 3 23 23 H 1.08994 * 110.41529 * 23.96726 * 4 2 1 24 24 H 1.09007 * 110.41224 * 261.52342 * 4 2 1 25 25 H 1.09002 * 109.46914 * 295.71630 * 6 5 4 26 26 H 1.08997 * 109.47440 * 55.72148 * 6 5 4 27 27 H 0.96997 * 120.00182 * 179.97438 * 10 9 7 28 28 H 1.08998 * 110.40882 * 158.26452 * 15 5 4 29 29 H 1.09001 * 110.41133 * 280.69959 * 15 5 4 30 30 H 1.09009 * 109.46916 * 60.00317 * 17 16 2 31 31 H 1.09003 * 109.47390 * 180.02562 * 17 16 2 32 32 H 1.08997 * 109.47542 * 300.00527 * 17 16 2 33 33 H 1.08995 * 109.47487 * 299.99427 * 18 16 2 34 34 H 1.09000 * 109.47375 * 59.99952 * 18 16 2 35 35 H 1.00904 * 110.99836 * 180.02562 * 19 18 16 36 36 H 1.00906 * 111.00012 * 303.95138 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0661 -0.7711 1.2252 5 7 3.2694 -1.4829 0.7225 6 6 3.6067 -2.6217 1.5867 7 6 4.7646 -3.3796 0.9899 8 1 5.2601 -3.0017 0.1078 9 6 5.1913 -4.5553 1.5700 10 7 6.2014 -5.2169 1.0489 11 14 4.3347 -5.2086 3.0961 12 1 3.2193 -6.1024 2.6933 13 1 5.3064 -5.9704 3.9212 14 1 3.7977 -4.0722 3.8869 15 6 2.8806 -1.9421 -0.6358 16 6 2.0657 -0.7704 -1.2243 17 6 2.9674 0.1331 -2.0679 18 6 0.9049 -1.3007 -2.0682 19 7 1.4356 -2.0308 -3.2272 20 1 -0.3634 0.5025 0.8964 21 1 -0.3634 0.5251 -0.8833 22 1 -0.3633 -1.0276 -0.0131 23 1 1.3229 -1.4848 1.5803 24 1 2.3394 -0.0779 2.0209 25 1 3.8824 -2.2576 2.5765 26 1 2.7441 -3.2828 1.6700 27 1 6.5019 -6.0439 1.4572 28 1 3.7670 -2.1308 -1.2415 29 1 2.2648 -2.8393 -0.5720 30 1 3.8096 0.4715 -1.4642 31 1 3.3375 -0.4243 -2.9284 32 1 2.3973 0.9959 -2.4122 33 1 0.2942 -1.9723 -1.4649 34 1 0.2948 -0.4656 -2.4125 35 1 0.6878 -2.3909 -3.8011 36 1 2.0574 -1.4482 -3.7678 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306537730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:12 Heat of formation + Delta-G solvation = -0.883614 kcal Electronic energy + Delta-G solvation = -15041.026419 eV Core-core repulsion = 12752.675177 eV Total energy + Delta-G solvation = -2288.351242 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.46987 -35.09202 -33.03916 -31.85503 -30.35366 -27.89439 -26.38607 -24.39893 -23.96082 -21.21847 -20.06295 -18.12609 -16.60664 -15.98251 -15.32660 -14.63537 -14.53496 -13.87246 -13.70180 -13.46800 -12.70782 -12.49062 -12.36912 -12.26235 -11.90837 -11.70476 -11.47124 -11.20977 -10.86091 -10.56052 -10.27418 -10.12745 -10.03321 -9.93953 -9.68260 -9.14439 -8.52038 -8.45264 -7.42221 -5.99411 -3.96395 3.32109 3.39292 3.42427 4.47249 4.64886 4.80003 4.94715 5.07846 5.28108 5.34382 5.43205 5.52235 5.62729 5.70116 5.76567 5.86804 5.94356 6.05847 6.13804 6.18649 6.35651 6.44644 6.51863 6.58352 6.75092 6.82999 6.98665 7.12138 7.29347 7.55417 7.60806 7.96954 8.03842 8.71263 9.09696 9.62795 11.13862 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036323 B = 0.009043 C = 0.008223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.671171 B = 3095.448442 C = 3404.211643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.075 0.925 4 C 0.031 3.969 5 N -0.503 5.503 6 C 0.153 3.847 7 C -0.508 4.508 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.901 5.901 11 Si 0.875 3.125 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.077 3.923 16 C -0.067 4.067 17 C -0.133 4.133 18 C 0.076 3.924 19 N -0.848 5.848 20 H 0.051 0.949 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.033 0.967 24 H 0.069 0.931 25 H 0.027 0.973 26 H -0.015 1.015 27 H 0.263 0.737 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.023 0.977 35 H 0.335 0.665 36 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.108 9.850 -4.952 16.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.094 0.906 4 C -0.097 4.097 5 N -0.227 5.227 6 C 0.026 3.974 7 C -0.546 4.546 8 H 0.098 0.902 9 C -0.133 4.133 10 N -0.540 5.540 11 Si 0.703 3.297 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.051 4.051 16 C -0.068 4.068 17 C -0.190 4.190 18 C -0.055 4.055 19 N -0.378 5.378 20 H 0.070 0.930 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.052 0.948 24 H 0.087 0.913 25 H 0.045 0.955 26 H 0.002 0.998 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.041 0.959 35 H 0.147 0.853 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.178 9.527 -4.377 15.326 hybrid contribution -1.577 -0.373 0.381 1.665 sum -12.755 9.154 -3.997 16.200 Atomic orbital electron populations 1.21937 0.95647 1.01673 1.01066 1.21950 0.94573 0.99434 0.94722 0.90621 1.23169 0.92787 0.97287 0.96500 1.65350 1.29480 1.25181 1.02683 1.20308 0.95722 0.87852 0.93538 1.21031 1.13934 1.05768 1.13881 0.90158 1.24906 0.94933 0.96533 0.96955 1.69897 1.26644 1.16735 1.40706 0.86860 0.79601 0.79329 0.83953 1.20408 1.21189 1.19264 1.22768 0.98099 0.93694 0.90500 1.21427 0.94860 0.96210 0.94290 1.21807 0.99620 0.97967 0.99655 1.21983 0.95616 0.95507 0.92345 1.58680 1.23133 1.43199 1.12793 0.92980 0.92817 0.92494 0.94831 0.91268 0.95497 0.99775 0.92747 0.90057 0.94215 0.91500 0.92545 0.93916 0.91123 0.95897 0.85312 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 7.92 37.15 0.29 -1.43 16 2 C -0.09 -1.26 3.30 -89.24 -0.29 -1.56 16 3 H 0.08 1.05 7.71 -51.93 -0.40 0.65 16 4 C 0.03 0.56 6.04 -2.18 -0.01 0.54 16 5 N -0.50 -11.05 5.44 -231.41 -1.26 -12.31 16 6 C 0.15 3.89 3.74 -4.98 -0.02 3.87 16 7 C -0.51 -14.94 9.13 -34.44 -0.31 -15.25 16 8 H 0.08 2.57 7.40 -52.49 -0.39 2.18 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 10 N -0.90 -28.24 13.96 55.43 0.77 -27.47 16 11 Si 0.88 22.18 27.37 -169.99 -4.65 17.53 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.27 -6.56 6.69 56.52 0.38 -6.18 16 15 C 0.08 1.58 4.55 -2.18 -0.01 1.57 16 16 C -0.07 -1.02 0.82 -153.13 -0.13 -1.15 16 17 C -0.13 -1.85 7.91 37.16 0.29 -1.56 16 18 C 0.08 1.01 4.48 -3.82 -0.02 0.99 16 19 N -0.85 -10.85 9.33 -10.37 -0.10 -10.95 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.05 0.56 6.97 -51.93 -0.36 0.19 16 22 H 0.06 0.70 6.62 -51.93 -0.34 0.35 16 23 H 0.03 0.60 7.63 -51.93 -0.40 0.20 16 24 H 0.07 1.17 8.14 -51.92 -0.42 0.74 16 25 H 0.03 0.70 7.56 -51.93 -0.39 0.30 16 26 H -0.02 -0.39 7.11 -51.93 -0.37 -0.76 16 27 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 28 H 0.08 1.85 7.26 -51.93 -0.38 1.47 16 29 H 0.04 0.88 7.65 -51.93 -0.40 0.48 16 30 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 31 H 0.06 0.76 6.51 -51.93 -0.34 0.42 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.99 6.68 -51.93 -0.35 0.64 16 34 H 0.02 0.26 6.88 -51.93 -0.36 -0.09 16 35 H 0.34 3.50 9.08 -39.29 -0.36 3.15 16 36 H 0.34 3.96 6.99 -39.29 -0.27 3.69 16 LS Contribution 273.28 15.07 4.12 4.12 Total: -1.00 -31.41 273.28 -7.37 -38.78 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.95 Total: 2.35 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -0.30 Total: -12.05 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.58 Total: -50.72 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.65 Total: 17.53 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.41 -7.37 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306537730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.893 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds