Wall clock time and date at job start Mon Mar 30 2020 02:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.37319 * 2 1 4 4 C 1.54376 * 110.32374 * 122.18306 * 2 1 3 5 5 N 1.48567 * 104.59755 * 142.75027 * 4 2 1 6 6 C 1.46894 * 110.99949 * 200.96331 * 5 4 2 7 7 C 1.50704 * 109.46990 * 175.72484 * 6 5 4 8 8 H 1.08002 * 119.99934 * 5.23037 * 7 6 5 9 9 C 1.37870 * 120.00012 * 185.23004 * 7 6 5 10 10 N 1.31518 * 120.00285 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00261 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47210 * 89.99856 * 11 9 7 13 13 H 1.48502 * 109.47089 * 210.00355 * 11 9 7 14 14 H 1.48498 * 109.46777 * 329.99922 * 11 9 7 15 15 C 1.48562 * 104.21625 * 320.51754 * 5 4 2 16 16 C 1.54261 * 110.32445 * 237.81897 * 2 1 3 17 17 C 1.52999 * 110.32534 * 122.20669 * 16 2 1 18 18 C 1.52998 * 110.32138 * 0.02562 * 16 2 1 19 19 N 1.46905 * 109.46831 * 180.02562 * 18 16 2 20 20 H 1.08997 * 109.47306 * 299.27351 * 1 2 3 21 21 H 1.09000 * 109.47254 * 59.26933 * 1 2 3 22 22 H 1.09000 * 109.47178 * 179.26870 * 1 2 3 23 23 H 1.08994 * 110.41529 * 23.96726 * 4 2 1 24 24 H 1.09007 * 110.41224 * 261.52342 * 4 2 1 25 25 H 1.09002 * 109.46914 * 295.71630 * 6 5 4 26 26 H 1.08997 * 109.47440 * 55.72148 * 6 5 4 27 27 H 0.96997 * 120.00182 * 179.97438 * 10 9 7 28 28 H 1.08998 * 110.40882 * 158.26452 * 15 5 4 29 29 H 1.09001 * 110.41133 * 280.69959 * 15 5 4 30 30 H 1.09009 * 109.46916 * 60.00317 * 17 16 2 31 31 H 1.09003 * 109.47390 * 180.02562 * 17 16 2 32 32 H 1.08997 * 109.47542 * 300.00527 * 17 16 2 33 33 H 1.08995 * 109.47487 * 299.99427 * 18 16 2 34 34 H 1.09000 * 109.47375 * 59.99952 * 18 16 2 35 35 H 1.00904 * 110.99836 * 180.02562 * 19 18 16 36 36 H 1.00906 * 111.00012 * 303.95138 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0661 -0.7711 1.2252 5 7 3.2694 -1.4829 0.7225 6 6 3.6067 -2.6217 1.5867 7 6 4.7646 -3.3796 0.9899 8 1 5.2601 -3.0017 0.1078 9 6 5.1913 -4.5553 1.5700 10 7 6.2014 -5.2169 1.0489 11 14 4.3347 -5.2086 3.0961 12 1 3.2193 -6.1024 2.6933 13 1 5.3064 -5.9704 3.9212 14 1 3.7977 -4.0722 3.8869 15 6 2.8806 -1.9421 -0.6358 16 6 2.0657 -0.7704 -1.2243 17 6 2.9674 0.1331 -2.0679 18 6 0.9049 -1.3007 -2.0682 19 7 1.4356 -2.0308 -3.2272 20 1 -0.3634 0.5025 0.8964 21 1 -0.3634 0.5251 -0.8833 22 1 -0.3633 -1.0276 -0.0131 23 1 1.3229 -1.4848 1.5803 24 1 2.3394 -0.0779 2.0209 25 1 3.8824 -2.2576 2.5765 26 1 2.7441 -3.2828 1.6700 27 1 6.5019 -6.0439 1.4572 28 1 3.7670 -2.1308 -1.2415 29 1 2.2648 -2.8393 -0.5720 30 1 3.8096 0.4715 -1.4642 31 1 3.3375 -0.4243 -2.9284 32 1 2.3973 0.9959 -2.4122 33 1 0.2942 -1.9723 -1.4649 34 1 0.2948 -0.4656 -2.4125 35 1 0.6878 -2.3909 -3.8011 36 1 2.0574 -1.4482 -3.7678 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306537730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:11 Heat of formation + Delta-G solvation = -25.929814 kcal Electronic energy + Delta-G solvation = -15042.112504 eV Core-core repulsion = 12752.675177 eV Total energy + Delta-G solvation = -2289.437327 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.83414 -36.61002 -34.80273 -33.54524 -31.53830 -29.80247 -27.70396 -25.81471 -25.41185 -22.80644 -21.74940 -19.55445 -18.63091 -17.22120 -16.69114 -16.47519 -15.77571 -15.49980 -15.07060 -14.98511 -14.54085 -13.81316 -13.72887 -13.65061 -13.23141 -13.10813 -12.99797 -12.71481 -12.44270 -12.32265 -11.89550 -11.69471 -11.51496 -11.33765 -11.20269 -11.13808 -10.81666 -9.43176 -9.18502 -8.30953 -6.34859 1.30649 1.32716 1.44416 2.31770 3.02060 3.34340 3.55461 3.70806 3.93112 4.05229 4.28157 4.39797 4.46504 4.58990 4.64079 4.68924 4.75107 4.79502 4.86569 4.95738 5.00717 5.04119 5.13405 5.20598 5.31350 5.35910 5.44964 5.50625 5.60837 5.96696 6.20769 6.36062 6.60186 6.70240 6.71012 7.29043 8.85923 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036323 B = 0.009043 C = 0.008223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.671171 B = 3095.448442 C = 3404.211643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 H 0.089 0.911 4 C 0.027 3.973 5 N -0.523 5.523 6 C 0.164 3.836 7 C -0.519 4.519 8 H 0.034 0.966 9 C 0.008 3.992 10 N -0.946 5.946 11 Si 0.949 3.051 12 H -0.268 1.268 13 H -0.277 1.277 14 H -0.251 1.251 15 C 0.084 3.916 16 C -0.061 4.061 17 C -0.129 4.129 18 C 0.083 3.917 19 N -0.867 5.867 20 H 0.065 0.935 21 H 0.076 0.924 22 H 0.050 0.950 23 H 0.034 0.966 24 H 0.079 0.921 25 H 0.027 0.973 26 H -0.016 1.016 27 H 0.268 0.732 28 H 0.042 0.958 29 H 0.014 0.986 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.349 0.651 36 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.708 11.225 -4.365 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 H 0.107 0.893 4 C -0.101 4.101 5 N -0.247 5.247 6 C 0.036 3.964 7 C -0.557 4.557 8 H 0.052 0.948 9 C -0.190 4.190 10 N -0.587 5.587 11 Si 0.772 3.228 12 H -0.194 1.194 13 H -0.202 1.202 14 H -0.174 1.174 15 C -0.044 4.044 16 C -0.062 4.062 17 C -0.187 4.187 18 C -0.048 4.048 19 N -0.400 5.400 20 H 0.084 0.916 21 H 0.095 0.905 22 H 0.069 0.931 23 H 0.052 0.948 24 H 0.098 0.902 25 H 0.045 0.955 26 H 0.002 0.998 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.033 0.967 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.163 0.837 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.794 10.925 -3.807 18.003 hybrid contribution -0.683 -0.782 0.114 1.044 sum -14.477 10.143 -3.692 18.058 Atomic orbital electron populations 1.21898 0.92949 1.01918 1.02943 1.21956 0.96710 0.99145 0.92110 0.89296 1.23323 0.91069 0.97285 0.98440 1.65231 1.32538 1.23867 1.03029 1.20054 0.93961 0.88655 0.93749 1.21222 1.15128 1.06619 1.12733 0.94772 1.25881 0.95629 0.96691 1.00770 1.70052 1.28434 1.17466 1.42748 0.85686 0.78609 0.79120 0.79368 1.19368 1.20186 1.17450 1.22619 0.96757 0.95253 0.89803 1.21414 0.95193 0.94366 0.95243 1.21766 0.99074 0.98796 0.99037 1.21894 0.94616 0.96325 0.91973 1.58632 1.24179 1.43830 1.13330 0.91581 0.90507 0.93083 0.94797 0.90250 0.95487 0.99829 0.92353 0.93965 0.96715 0.93633 0.92623 0.90582 0.91962 0.92715 0.83727 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 7.92 71.98 0.57 -2.16 16 2 C -0.08 -2.09 3.30 -9.90 -0.03 -2.12 16 3 H 0.09 2.14 7.71 -2.39 -0.02 2.12 16 4 C 0.03 0.91 6.04 86.45 0.52 1.44 16 5 N -0.52 -23.31 5.44 -886.05 -4.82 -28.13 16 6 C 0.16 8.44 3.74 85.56 0.32 8.76 16 7 C -0.52 -31.84 9.13 25.60 0.23 -31.60 16 8 H 0.03 2.34 7.40 -2.91 -0.02 2.32 16 9 C 0.01 0.46 5.47 84.65 0.46 0.93 16 10 N -0.95 -61.27 13.96 21.45 0.30 -60.97 16 11 Si 0.95 45.97 27.37 68.60 1.88 47.85 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 14 H -0.25 -11.38 6.69 99.48 0.67 -10.71 16 15 C 0.08 3.53 4.55 86.45 0.39 3.92 16 16 C -0.06 -1.79 0.82 -51.29 -0.04 -1.83 16 17 C -0.13 -3.41 7.91 71.98 0.57 -2.84 16 18 C 0.08 1.98 4.48 86.30 0.39 2.37 16 19 N -0.87 -21.07 9.33 -186.72 -1.74 -22.81 16 20 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 21 H 0.08 1.18 6.97 -2.39 -0.02 1.17 16 22 H 0.05 1.08 6.62 -2.39 -0.02 1.06 16 23 H 0.03 1.15 7.63 -2.39 -0.02 1.14 16 24 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 25 H 0.03 1.39 7.56 -2.39 -0.02 1.37 16 26 H -0.02 -0.81 7.11 -2.39 -0.02 -0.83 16 27 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 28 H 0.04 2.05 7.26 -2.39 -0.02 2.04 16 29 H 0.01 0.67 7.65 -2.39 -0.02 0.65 16 30 H 0.04 1.38 8.14 -2.38 -0.02 1.37 16 31 H 0.05 1.46 6.51 -2.39 -0.02 1.44 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.62 6.68 -2.39 -0.02 1.60 16 34 H 0.05 1.01 6.88 -2.39 -0.02 0.99 16 35 H 0.35 6.69 9.08 -89.69 -0.81 5.87 16 36 H 0.35 7.60 6.99 -89.69 -0.63 6.97 16 Total: -1.00 -70.86 273.28 -1.42 -72.28 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -0.42 Total: 14.92 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 3.38 Total: -23.15 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -6.26 Total: -111.90 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.88 Total: 47.85 kcal Total: -70.86 -1.42 -72.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306537730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.353 kcal (2) G-P(sol) polarization free energy of solvation -70.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds