Wall clock time and date at job start Mon Mar 30 2020 02:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.45282 * 2 1 4 4 C 1.53037 * 109.46311 * 240.02659 * 2 1 3 5 5 H 1.08998 * 109.50200 * 60.85996 * 4 2 1 6 6 N 1.46903 * 109.53445 * 300.76479 * 4 2 1 7 7 C 1.53116 * 109.27720 * 180.80318 * 4 2 1 8 8 C 1.53116 * 109.16127 * 57.65702 * 7 4 2 9 9 C 1.53043 * 109.27865 * 302.34226 * 8 7 4 10 10 N 1.46845 * 109.46233 * 119.97026 * 2 1 3 11 11 C 1.46896 * 111.00582 * 305.85888 * 10 2 1 12 12 C 1.52993 * 109.47574 * 165.43014 * 11 10 2 13 13 C 1.50701 * 109.47417 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99891 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00086 * 179.97438 * 13 12 11 16 16 N 1.31506 * 120.00326 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99786 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47463 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47387 * 120.00206 * 17 15 13 20 20 H 1.48505 * 109.46980 * 240.00144 * 17 15 13 21 21 H 1.09001 * 109.47424 * 187.34694 * 1 2 3 22 22 H 1.09009 * 109.47021 * 307.34505 * 1 2 3 23 23 H 1.08997 * 109.47392 * 67.34602 * 1 2 3 24 24 H 1.00898 * 110.99630 * 180.17382 * 6 4 2 25 25 H 1.00894 * 111.00222 * 304.13225 * 6 4 2 26 26 H 1.08996 * 109.52212 * 297.74941 * 7 4 2 27 27 H 1.09004 * 109.57188 * 177.58893 * 7 4 2 28 28 H 1.09005 * 109.50442 * 62.27923 * 8 7 4 29 29 H 1.08997 * 109.50807 * 182.39967 * 8 7 4 30 30 H 1.08995 * 109.46029 * 179.19292 * 9 8 7 31 31 H 1.09001 * 109.46165 * 299.16682 * 9 8 7 32 32 H 1.09003 * 109.47038 * 285.43299 * 11 10 2 33 33 H 1.09003 * 109.47286 * 45.42401 * 11 10 2 34 34 H 1.08996 * 109.47156 * 299.99775 * 12 11 10 35 35 H 1.08999 * 109.47260 * 59.99905 * 12 11 10 36 36 H 0.97005 * 120.00572 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 1 1.6894 -0.1982 -2.1399 6 7 1.5359 -2.1007 -1.2612 7 6 3.5709 -0.7360 -1.2356 8 6 4.0548 -1.4187 0.0467 9 6 3.4865 -0.6776 1.2591 10 7 2.0193 -0.6916 1.1994 11 6 1.4373 -0.1106 2.4166 12 6 1.6685 -1.0583 3.5952 13 6 1.0720 -0.4618 4.8440 14 1 0.5770 0.4972 4.8012 15 6 1.1572 -1.1408 6.0409 16 7 1.7586 -2.3091 6.0928 17 14 0.4172 -0.4017 7.5887 18 1 -0.1985 0.9103 7.2653 19 1 -0.6210 -1.3170 8.1269 20 1 1.4834 -0.2106 8.6046 21 1 -0.3634 -1.0192 0.1314 22 1 -0.3633 0.6234 0.8171 23 1 -0.3634 0.3958 -0.9483 24 1 1.8619 -2.5980 -2.0763 25 1 1.7923 -2.5862 -0.4148 26 1 3.9456 0.2871 -1.2672 27 1 3.9388 -1.2856 -2.1020 28 1 3.7124 -2.4535 0.0595 29 1 5.1439 -1.3947 0.0832 30 1 3.8175 -1.1699 2.1735 31 1 3.8403 0.3534 1.2532 32 1 1.9111 0.8490 2.6235 33 1 0.3668 0.0364 2.2731 34 1 1.1947 -2.0178 3.3883 35 1 2.7390 -1.2051 3.7387 36 1 1.8189 -2.7867 6.9350 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306739089.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:52 Heat of formation + Delta-G solvation = -12.451755 kcal Electronic energy + Delta-G solvation = -14887.289050 eV Core-core repulsion = 12598.436176 eV Total energy + Delta-G solvation = -2288.852874 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.35189 -34.86922 -32.78275 -32.58831 -30.12229 -28.49478 -26.29535 -24.82695 -22.85230 -21.28971 -19.99885 -18.71540 -16.45580 -15.95161 -15.14923 -14.75530 -14.41800 -14.23909 -14.10777 -13.25670 -12.89856 -12.63267 -12.21359 -12.05514 -11.61296 -11.50071 -11.23712 -11.01272 -10.90578 -10.72104 -10.52052 -10.43509 -9.98398 -9.62727 -9.26536 -9.05078 -8.39172 -8.29527 -7.62835 -5.96687 -3.98616 3.32865 3.40261 3.44334 4.36849 4.54218 4.82546 4.90898 5.04303 5.17982 5.36930 5.39365 5.65292 5.68448 5.76002 5.83809 5.89354 5.98822 6.03409 6.23685 6.28222 6.33630 6.41247 6.52992 6.60779 6.76409 7.07305 7.42367 7.58704 7.66839 7.79808 7.86318 7.97088 8.13647 8.48098 9.09127 9.64884 11.14678 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049159 B = 0.007134 C = 0.006718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.444676 B = 3923.947210 C = 4166.922202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.086 3.914 3 H 0.031 0.969 4 C 0.102 3.898 5 H 0.074 0.926 6 N -0.835 5.835 7 C -0.157 4.157 8 C -0.117 4.117 9 C 0.053 3.947 10 N -0.530 5.530 11 C 0.059 3.941 12 C 0.031 3.969 13 C -0.520 4.520 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 H 0.074 0.926 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.328 0.672 25 H 0.356 0.644 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.023 0.977 32 H 0.016 0.984 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.014 0.986 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.628 2.767 -13.796 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 H 0.049 0.951 4 C -0.010 4.010 5 H 0.092 0.908 6 N -0.365 5.365 7 C -0.196 4.196 8 C -0.155 4.155 9 C -0.075 4.075 10 N -0.255 5.255 11 C -0.068 4.068 12 C -0.007 4.007 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.093 0.907 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.139 0.861 25 H 0.172 0.828 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.042 0.958 32 H 0.034 0.966 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.032 0.968 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.778 2.477 -13.722 14.056 hybrid contribution 1.056 0.982 1.032 1.773 sum 2.834 3.459 -12.690 13.455 Atomic orbital electron populations 1.21757 0.93962 1.03308 1.00208 1.21591 0.96098 0.94233 0.90401 0.95110 1.21435 0.91061 0.91229 0.97319 0.90828 1.58840 1.66609 1.03065 1.08030 1.22435 0.98338 1.00968 0.97894 1.21591 0.99518 1.00125 0.94290 1.22108 0.88515 0.98179 0.98716 1.61998 1.05994 1.55108 1.02388 1.22421 0.98574 0.96556 0.89224 1.19060 0.96937 0.94728 0.89961 1.21251 1.36352 1.04908 0.93400 0.92838 1.24985 0.95465 0.94903 0.98963 1.69980 1.43470 1.13771 1.26034 0.86564 0.78956 0.79252 0.83381 1.19808 1.20983 1.21098 0.90651 0.92996 0.93289 0.86087 0.82826 0.92192 0.92434 0.91467 0.92004 0.89651 0.95843 0.96561 0.91296 0.95730 0.96781 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.28 37.16 0.31 -1.75 16 2 C 0.09 1.33 2.21 -67.72 -0.15 1.18 16 3 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 4 C 0.10 1.32 3.15 -67.63 -0.21 1.11 16 5 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 6 N -0.83 -10.82 8.53 -4.60 -0.04 -10.86 16 7 C -0.16 -1.87 5.67 -26.61 -0.15 -2.02 16 8 C -0.12 -1.58 5.76 -26.65 -0.15 -1.73 16 9 C 0.05 0.89 5.30 -3.83 -0.02 0.87 16 10 N -0.53 -9.56 3.76 -226.69 -0.85 -10.41 16 11 C 0.06 1.26 4.69 -3.83 -0.02 1.24 16 12 C 0.03 0.80 5.00 -27.89 -0.14 0.66 16 13 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 14 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 17 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H 0.07 1.26 7.83 -51.93 -0.41 0.85 16 22 H 0.05 0.82 6.46 -51.92 -0.34 0.48 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.33 3.51 9.04 -39.29 -0.36 3.15 16 25 H 0.36 5.21 6.76 -39.29 -0.27 4.94 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.92 6.90 -51.93 -0.36 0.56 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.62 6.42 -51.93 -0.33 1.29 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.02 0.35 8.07 -51.93 -0.42 -0.07 16 33 H 0.07 1.47 5.61 -51.93 -0.29 1.18 16 34 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.01 0.39 6.59 -51.93 -0.34 0.04 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 275.94 15.07 4.16 4.16 Total: -1.00 -29.49 275.94 -8.00 -37.48 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.03 Total: 3.19 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -0.95 Total: -14.08 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -0.16 Total: -47.60 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.49 -8.00 -37.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306739089.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.033 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds