Wall clock time and date at job start Mon Mar 30 2020 02:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.45282 * 2 1 4 4 C 1.53037 * 109.46311 * 240.02659 * 2 1 3 5 5 H 1.08998 * 109.50200 * 60.85996 * 4 2 1 6 6 N 1.46903 * 109.53445 * 300.76479 * 4 2 1 7 7 C 1.53116 * 109.27720 * 180.80318 * 4 2 1 8 8 C 1.53116 * 109.16127 * 57.65702 * 7 4 2 9 9 C 1.53043 * 109.27865 * 302.34226 * 8 7 4 10 10 N 1.46845 * 109.46233 * 119.97026 * 2 1 3 11 11 C 1.46896 * 111.00582 * 305.85888 * 10 2 1 12 12 C 1.52993 * 109.47574 * 165.43014 * 11 10 2 13 13 C 1.50701 * 109.47417 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99891 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00086 * 179.97438 * 13 12 11 16 16 N 1.31506 * 120.00326 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99786 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47463 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47387 * 120.00206 * 17 15 13 20 20 H 1.48505 * 109.46980 * 240.00144 * 17 15 13 21 21 H 1.09001 * 109.47424 * 187.34694 * 1 2 3 22 22 H 1.09009 * 109.47021 * 307.34505 * 1 2 3 23 23 H 1.08997 * 109.47392 * 67.34602 * 1 2 3 24 24 H 1.00898 * 110.99630 * 180.17382 * 6 4 2 25 25 H 1.00894 * 111.00222 * 304.13225 * 6 4 2 26 26 H 1.08996 * 109.52212 * 297.74941 * 7 4 2 27 27 H 1.09004 * 109.57188 * 177.58893 * 7 4 2 28 28 H 1.09005 * 109.50442 * 62.27923 * 8 7 4 29 29 H 1.08997 * 109.50807 * 182.39967 * 8 7 4 30 30 H 1.08995 * 109.46029 * 179.19292 * 9 8 7 31 31 H 1.09001 * 109.46165 * 299.16682 * 9 8 7 32 32 H 1.09003 * 109.47038 * 285.43299 * 11 10 2 33 33 H 1.09003 * 109.47286 * 45.42401 * 11 10 2 34 34 H 1.08996 * 109.47156 * 299.99775 * 12 11 10 35 35 H 1.08999 * 109.47260 * 59.99905 * 12 11 10 36 36 H 0.97005 * 120.00572 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 1 1.6894 -0.1982 -2.1399 6 7 1.5359 -2.1007 -1.2612 7 6 3.5709 -0.7360 -1.2356 8 6 4.0548 -1.4187 0.0467 9 6 3.4865 -0.6776 1.2591 10 7 2.0193 -0.6916 1.1994 11 6 1.4373 -0.1106 2.4166 12 6 1.6685 -1.0583 3.5952 13 6 1.0720 -0.4618 4.8440 14 1 0.5770 0.4972 4.8012 15 6 1.1572 -1.1408 6.0409 16 7 1.7586 -2.3091 6.0928 17 14 0.4172 -0.4017 7.5887 18 1 -0.1985 0.9103 7.2653 19 1 -0.6210 -1.3170 8.1269 20 1 1.4834 -0.2106 8.6046 21 1 -0.3634 -1.0192 0.1314 22 1 -0.3633 0.6234 0.8171 23 1 -0.3634 0.3958 -0.9483 24 1 1.8619 -2.5980 -2.0763 25 1 1.7923 -2.5862 -0.4148 26 1 3.9456 0.2871 -1.2672 27 1 3.9388 -1.2856 -2.1020 28 1 3.7124 -2.4535 0.0595 29 1 5.1439 -1.3947 0.0832 30 1 3.8175 -1.1699 2.1735 31 1 3.8403 0.3534 1.2532 32 1 1.9111 0.8490 2.6235 33 1 0.3668 0.0364 2.2731 34 1 1.1947 -2.0178 3.3883 35 1 2.7390 -1.2051 3.7387 36 1 1.8189 -2.7867 6.9350 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306739089.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:51 Heat of formation + Delta-G solvation = -33.002221 kcal Electronic energy + Delta-G solvation = -14888.180185 eV Core-core repulsion = 12598.436176 eV Total energy + Delta-G solvation = -2289.744009 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.61567 -36.40682 -34.77190 -33.77343 -31.78629 -29.95668 -27.52277 -26.63625 -24.44481 -22.59280 -21.68699 -19.92014 -18.53879 -17.20288 -16.65486 -16.35353 -15.99982 -15.51847 -15.34332 -14.65257 -14.40315 -14.26597 -13.68989 -13.54272 -13.20626 -12.86619 -12.76917 -12.68675 -12.42802 -12.31218 -11.90491 -11.87694 -11.60105 -11.33297 -11.11532 -10.91013 -10.52516 -9.41470 -9.08388 -8.19792 -6.30943 1.39412 1.40012 1.53236 2.40065 3.04607 3.13396 3.74969 3.81881 3.96236 4.12045 4.15215 4.45247 4.47617 4.49631 4.55693 4.63298 4.78699 4.90492 4.93621 4.98873 5.03006 5.06788 5.16712 5.28697 5.30360 5.48044 5.51654 5.69489 5.81288 6.14255 6.33334 6.38767 6.49252 6.81214 6.86513 7.38031 8.92398 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049159 B = 0.007134 C = 0.006718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.444676 B = 3923.947210 C = 4166.922202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.081 3.919 3 H 0.034 0.966 4 C 0.106 3.894 5 H 0.094 0.906 6 N -0.840 5.840 7 C -0.149 4.149 8 C -0.111 4.111 9 C 0.052 3.948 10 N -0.535 5.535 11 C 0.075 3.925 12 C 0.042 3.958 13 C -0.545 4.545 14 H 0.057 0.943 15 C 0.002 3.998 16 N -0.930 5.930 17 Si 0.965 3.035 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.057 0.943 22 H 0.040 0.960 23 H 0.073 0.927 24 H 0.343 0.657 25 H 0.345 0.655 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.025 0.975 32 H 0.011 0.989 33 H 0.070 0.930 34 H -0.008 1.008 35 H -0.010 1.010 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 3.729 -14.999 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.027 4.027 3 H 0.052 0.948 4 C -0.006 4.006 5 H 0.112 0.888 6 N -0.371 5.371 7 C -0.188 4.188 8 C -0.149 4.149 9 C -0.076 4.076 10 N -0.261 5.261 11 C -0.052 4.052 12 C 0.004 3.996 13 C -0.583 4.583 14 H 0.076 0.924 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.790 3.210 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.203 1.203 21 H 0.076 0.924 22 H 0.059 0.941 23 H 0.092 0.908 24 H 0.156 0.844 25 H 0.159 0.841 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.030 0.970 33 H 0.088 0.912 34 H 0.010 0.990 35 H 0.008 0.992 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.655 3.445 -14.962 15.442 hybrid contribution 1.110 0.654 1.376 1.885 sum 2.765 4.100 -13.586 14.457 Atomic orbital electron populations 1.21707 0.93876 1.02064 1.01108 1.21753 0.96234 0.94567 0.90147 0.94804 1.21439 0.91817 0.91015 0.96361 0.88794 1.58815 1.66933 1.03221 1.08158 1.22384 0.97390 1.01494 0.97566 1.21547 1.00325 0.99480 0.93501 1.22110 0.87877 0.98409 0.99216 1.61916 1.06717 1.55397 1.02032 1.22040 0.98882 0.94940 0.89332 1.18857 0.94757 0.94223 0.91725 1.21666 1.36721 1.05286 0.94637 0.92449 1.25948 0.95720 0.95247 1.02696 1.70113 1.44528 1.15201 1.27212 0.85397 0.78216 0.78737 0.78664 1.18682 1.20244 1.20307 0.92410 0.94142 0.90801 0.84397 0.84081 0.91549 0.89944 0.91885 0.90379 0.92938 0.95710 0.97045 0.91191 0.98978 0.99166 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 8.28 71.98 0.60 -3.22 16 2 C 0.08 2.40 2.21 44.94 0.10 2.50 16 3 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 4 C 0.11 2.45 3.15 44.97 0.14 2.59 16 5 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 6 N -0.84 -20.13 8.53 -168.46 -1.44 -21.56 16 7 C -0.15 -3.08 5.67 30.67 0.17 -2.90 16 8 C -0.11 -2.81 5.76 30.65 0.18 -2.64 16 9 C 0.05 1.77 5.30 86.33 0.46 2.22 16 10 N -0.54 -19.49 3.76 -871.12 -3.27 -22.77 16 11 C 0.08 3.32 4.69 86.30 0.40 3.73 16 12 C 0.04 2.30 5.00 29.85 0.15 2.45 16 13 C -0.54 -31.92 9.11 25.60 0.23 -31.68 16 14 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 15 C 0.00 0.11 5.46 84.66 0.46 0.57 16 16 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 17 Si 0.97 45.06 29.54 68.60 2.03 47.08 16 18 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H 0.06 1.90 7.83 -2.39 -0.02 1.88 16 22 H 0.04 1.25 6.46 -2.38 -0.02 1.23 16 23 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 24 H 0.34 6.42 9.04 -89.70 -0.81 5.61 16 25 H 0.34 9.79 6.76 -89.70 -0.61 9.18 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.08 1.36 8.14 -2.38 -0.02 1.35 16 28 H 0.06 1.67 6.90 -2.38 -0.02 1.65 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 2.10 6.42 -2.39 -0.02 2.09 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.01 0.50 8.07 -2.39 -0.02 0.49 16 33 H 0.07 3.05 5.61 -2.39 -0.01 3.03 16 34 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H -0.01 -0.59 6.59 -2.39 -0.02 -0.60 16 36 H 0.26 15.25 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -64.35 275.94 0.14 -64.21 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -0.36 Total: 16.79 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 2.90 Total: -26.37 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -4.43 Total: -101.72 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.35 0.14 -64.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306739089.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.209 kcal (2) G-P(sol) polarization free energy of solvation -64.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds