Wall clock time and date at job start Mon Mar 30 2020 02:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.45171 * 2 1 4 4 C 1.53035 * 109.46340 * 119.97269 * 2 1 3 5 5 H 1.09000 * 109.53203 * 59.23714 * 4 2 1 6 6 N 1.46897 * 109.50690 * 299.13933 * 4 2 1 7 7 C 1.53116 * 109.27925 * 179.19510 * 4 2 1 8 8 C 1.53120 * 109.16004 * 302.35052 * 7 4 2 9 9 C 1.53031 * 109.28151 * 57.65271 * 8 7 4 10 10 N 1.46843 * 109.52464 * 300.82251 * 9 8 7 11 11 C 1.46907 * 111.00250 * 185.83699 * 10 9 8 12 12 C 1.53002 * 109.47051 * 66.22475 * 11 10 9 13 13 C 1.50689 * 109.47202 * 180.02562 * 12 11 10 14 14 H 1.08007 * 120.00313 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00141 * 180.27436 * 13 12 11 16 16 N 1.31511 * 119.99917 * 359.72224 * 15 13 12 17 17 Si 1.86797 * 120.00016 * 179.72111 * 15 13 12 18 18 H 1.48499 * 109.47488 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47087 * 120.00038 * 17 15 13 20 20 H 1.48500 * 109.47472 * 240.00060 * 17 15 13 21 21 H 1.08993 * 109.46864 * 172.56005 * 1 2 3 22 22 H 1.09001 * 109.47103 * 292.55616 * 1 2 3 23 23 H 1.08997 * 109.46975 * 52.55840 * 1 2 3 24 24 H 1.00897 * 111.00179 * 180.19215 * 6 4 2 25 25 H 1.00898 * 110.99918 * 304.15003 * 6 4 2 26 26 H 1.08993 * 109.52554 * 182.44365 * 7 4 2 27 27 H 1.09005 * 109.52316 * 62.25409 * 7 4 2 28 28 H 1.09001 * 109.50537 * 297.70804 * 8 7 4 29 29 H 1.09009 * 109.53274 * 177.61449 * 8 7 4 30 30 H 1.09003 * 109.46664 * 180.80336 * 9 8 7 31 31 H 1.09004 * 109.46560 * 60.83590 * 9 8 7 32 32 H 1.08996 * 109.47083 * 306.22371 * 11 10 9 33 33 H 1.08994 * 109.47095 * 186.22334 * 11 10 9 34 34 H 1.08998 * 109.46862 * 59.99677 * 12 11 10 35 35 H 1.09009 * 109.46757 * 300.00315 * 12 11 10 36 36 H 0.97001 * 120.00183 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 1.2499 5 1 1.6660 -1.7447 1.2582 6 7 1.5677 -0.0165 2.4494 7 6 3.5710 -0.7360 1.2356 8 6 4.0548 -1.4187 -0.0468 9 6 3.4865 -0.6776 -1.2591 10 7 2.0193 -0.6916 -1.1994 11 6 1.4373 -0.1103 -2.4166 12 6 1.7576 -1.0076 -3.6138 13 6 1.1611 -0.4110 -4.8624 14 1 0.6084 0.5152 -4.8076 15 6 1.3157 -1.0509 -6.0740 16 7 1.9883 -2.1790 -6.1407 17 14 0.5696 -0.3154 -7.6205 18 1 -0.1317 0.9483 -7.2792 19 1 1.6462 -0.0335 -8.6037 20 1 -0.3984 -1.2760 -8.2083 21 1 -0.3633 -1.0190 -0.1331 22 1 -0.3633 0.3942 0.9491 23 1 -0.3633 0.6248 -0.8159 24 1 1.8943 -0.4720 3.2883 25 1 1.8463 0.9531 2.4325 26 1 3.9380 -1.2863 2.1019 27 1 3.9457 0.2871 1.2672 28 1 3.7126 -2.4535 -0.0596 29 1 5.1440 -1.3951 -0.0836 30 1 3.8175 -1.1697 -2.1737 31 1 3.8403 0.3534 -1.2532 32 1 1.8581 0.8813 -2.5828 33 1 0.3564 -0.0315 -2.3006 34 1 1.3368 -1.9992 -3.4475 35 1 2.8386 -1.0864 -3.7297 36 1 2.0974 -2.6290 -6.9931 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306739092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:56 Heat of formation + Delta-G solvation = -35.816481 kcal Electronic energy + Delta-G solvation = -14733.168502 eV Core-core repulsion = 12443.302457 eV Total energy + Delta-G solvation = -2289.866045 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.51462 -36.51778 -34.90173 -34.02371 -31.93061 -29.86175 -27.39265 -26.63403 -24.29519 -22.35913 -21.65677 -20.74942 -18.59582 -17.09293 -16.61823 -16.48245 -16.10991 -15.38274 -15.23002 -14.78588 -14.53729 -14.23643 -13.94269 -13.31798 -13.19350 -12.95404 -12.83137 -12.74519 -12.43482 -12.19792 -11.93099 -11.89820 -11.66415 -11.35817 -11.20817 -10.98711 -10.53874 -9.52381 -9.15352 -8.20655 -6.32000 1.39514 1.40168 1.53533 2.39700 2.96254 3.12654 3.70292 3.80499 3.88580 4.06673 4.19948 4.32360 4.45208 4.48976 4.58737 4.65259 4.69849 4.89951 4.92021 5.00849 5.04873 5.07587 5.18321 5.20669 5.32647 5.46131 5.48321 5.66979 5.80094 6.12065 6.23116 6.33838 6.41631 6.68677 6.85243 7.37106 8.91840 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052645 B = 0.006803 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.741082 B = 4115.047887 C = 4484.509646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.088 3.912 3 H 0.029 0.971 4 C 0.107 3.893 5 H 0.075 0.925 6 N -0.839 5.839 7 C -0.144 4.144 8 C -0.108 4.108 9 C 0.052 3.948 10 N -0.544 5.544 11 C 0.077 3.923 12 C 0.038 3.962 13 C -0.544 4.544 14 H 0.058 0.942 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.967 3.033 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.047 0.953 22 H 0.085 0.915 23 H 0.041 0.959 24 H 0.353 0.647 25 H 0.344 0.656 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.025 0.975 32 H 0.013 0.987 33 H 0.070 0.930 34 H -0.009 1.009 35 H -0.007 1.007 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.088 4.588 15.700 16.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.020 4.020 3 H 0.047 0.953 4 C -0.005 4.005 5 H 0.093 0.907 6 N -0.369 5.369 7 C -0.183 4.183 8 C -0.146 4.146 9 C -0.076 4.076 10 N -0.269 5.269 11 C -0.050 4.050 12 C 0.000 4.000 13 C -0.582 4.582 14 H 0.077 0.923 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.791 3.209 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.202 1.202 21 H 0.066 0.934 22 H 0.104 0.896 23 H 0.060 0.940 24 H 0.167 0.833 25 H 0.157 0.843 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.088 0.912 34 H 0.010 0.990 35 H 0.012 0.988 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.239 3.801 15.387 15.898 hybrid contribution 1.112 0.990 -1.147 1.879 sum 2.351 4.790 14.240 15.207 Atomic orbital electron populations 1.21771 0.93841 1.01495 1.02007 1.21591 0.96194 0.94498 0.89766 0.95312 1.21267 0.92150 0.97913 0.89189 0.90695 1.58777 1.67434 1.06949 1.03762 1.22389 0.96889 1.00998 0.98049 1.21495 1.00307 0.99589 0.93216 1.22113 0.87621 0.98408 0.99454 1.61933 1.07206 1.55600 1.02200 1.22018 0.98967 0.94906 0.89100 1.18916 0.94967 0.94337 0.91755 1.21649 1.34435 1.08393 0.93772 0.92343 1.25966 0.95647 0.95233 1.02792 1.70117 1.42350 1.18149 1.26589 0.85373 0.78256 0.78690 0.78553 1.18616 1.20266 1.20238 0.93369 0.89619 0.93968 0.83270 0.84319 0.89865 0.91941 0.91877 0.90167 0.92727 0.95698 0.96919 0.91184 0.99026 0.98845 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 8.48 71.98 0.61 -3.37 16 2 C 0.09 2.66 2.08 44.94 0.09 2.75 16 3 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 4 C 0.11 2.55 2.85 44.97 0.13 2.68 16 5 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 6 N -0.84 -15.19 8.41 -168.47 -1.42 -16.60 16 7 C -0.14 -3.04 5.57 30.67 0.17 -2.87 16 8 C -0.11 -2.86 6.09 30.64 0.19 -2.67 16 9 C 0.05 1.83 5.29 86.32 0.46 2.28 16 10 N -0.54 -20.55 4.49 -871.12 -3.91 -24.46 16 11 C 0.08 3.46 4.62 86.30 0.40 3.86 16 12 C 0.04 2.09 4.91 29.85 0.15 2.23 16 13 C -0.54 -31.95 9.11 25.60 0.23 -31.71 16 14 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 15 C 0.00 0.09 5.46 84.66 0.46 0.55 16 16 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 17 Si 0.97 45.05 29.54 68.60 2.03 47.07 16 18 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.09 2.20 7.41 -2.39 -0.02 2.18 16 23 H 0.04 1.32 6.55 -2.39 -0.02 1.30 16 24 H 0.35 4.88 9.04 -89.70 -0.81 4.07 16 25 H 0.34 5.51 8.98 -89.70 -0.81 4.70 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.05 2.25 6.23 -2.39 -0.01 2.24 16 31 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.01 0.57 8.12 -2.39 -0.02 0.55 16 33 H 0.07 3.08 5.80 -2.39 -0.01 3.06 16 34 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 35 H -0.01 -0.40 6.44 -2.38 -0.02 -0.41 16 36 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -65.43 279.43 -0.69 -66.12 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -0.56 Total: 11.80 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 2.89 Total: -26.27 kcal Atomic # 7 Polarization: -93.68 SS G_CDS: -5.04 Total: -98.72 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -65.43 -0.69 -66.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306739092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.302 kcal (2) G-P(sol) polarization free energy of solvation -65.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds