Wall clock time and date at job start Mon Mar 30 2020 02:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.45719 * 2 1 4 4 C 1.53039 * 109.45927 * 240.02459 * 2 1 3 5 5 H 1.08997 * 109.50964 * 300.75260 * 4 2 1 6 6 N 1.46909 * 109.50073 * 60.86935 * 4 2 1 7 7 C 1.53116 * 109.27911 * 180.80685 * 4 2 1 8 8 C 1.53112 * 109.16138 * 57.65412 * 7 4 2 9 9 C 1.53035 * 109.28189 * 302.35059 * 8 7 4 10 10 N 1.46841 * 109.46107 * 119.97886 * 2 1 3 11 11 C 1.46904 * 110.99971 * 305.84837 * 10 2 1 12 12 C 1.53003 * 109.47270 * 165.83035 * 11 10 2 13 13 C 1.50694 * 109.46919 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00671 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99688 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00417 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00110 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47293 * 89.99860 * 17 15 13 19 19 H 1.48503 * 109.47020 * 330.00263 * 17 15 13 20 20 H 1.48499 * 109.47402 * 209.99904 * 17 15 13 21 21 H 1.09000 * 109.46546 * 306.73617 * 1 2 3 22 22 H 1.09003 * 109.47173 * 66.73336 * 1 2 3 23 23 H 1.08998 * 109.47644 * 186.73581 * 1 2 3 24 24 H 1.00903 * 110.99618 * 179.97438 * 6 4 2 25 25 H 1.00900 * 110.99703 * 303.94729 * 6 4 2 26 26 H 1.08999 * 109.52585 * 177.56369 * 7 4 2 27 27 H 1.09004 * 109.52448 * 297.74929 * 7 4 2 28 28 H 1.09011 * 109.50151 * 62.28777 * 8 7 4 29 29 H 1.08996 * 109.50599 * 182.36226 * 8 7 4 30 30 H 1.09004 * 109.45930 * 299.16325 * 9 8 7 31 31 H 1.08999 * 109.46423 * 179.19133 * 9 8 7 32 32 H 1.08998 * 109.46922 * 45.83035 * 11 10 2 33 33 H 1.08994 * 109.47217 * 285.83408 * 11 10 2 34 34 H 1.09007 * 109.46924 * 60.00250 * 12 11 10 35 35 H 1.08996 * 109.46848 * 300.00542 * 12 11 10 36 36 H 0.97005 * 119.99758 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2500 5 1 1.6658 -1.7447 -1.2577 6 7 1.5676 -0.0163 -2.4494 7 6 3.5709 -0.7362 -1.2357 8 6 4.0547 -1.4189 0.0466 9 6 3.4865 -0.6779 1.2590 10 7 2.0193 -0.6918 1.1993 11 6 1.4374 -0.1106 2.4165 12 6 1.6772 -1.0538 3.5971 13 6 1.0797 -0.4579 4.8456 14 1 0.5794 0.4981 4.8016 15 6 1.1728 -1.1327 6.0443 16 7 1.7826 -2.2967 6.0981 17 14 0.4328 -0.3937 7.5921 18 1 -0.9750 -0.8451 7.7320 19 1 0.4707 1.0880 7.5002 20 1 1.2144 -0.8365 8.7746 21 1 -0.3632 0.6147 0.8236 22 1 -0.3634 0.4059 -0.9441 23 1 -0.3634 -1.0205 0.1205 24 1 1.8919 -0.4735 -3.2885 25 1 0.5620 0.0662 -2.4478 26 1 3.9378 -1.2864 -2.1021 27 1 3.9457 0.2869 -1.2673 28 1 3.7123 -2.4538 0.0593 29 1 5.1438 -1.3956 0.0826 30 1 3.8404 0.3531 1.2531 31 1 3.8174 -1.1701 2.1734 32 1 0.3657 0.0298 2.2756 33 1 1.9063 0.8521 2.6195 34 1 2.7490 -1.1942 3.7380 35 1 1.2083 -2.0166 3.3940 36 1 2.1665 -2.6807 5.2943 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306739093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:59 Heat of formation + Delta-G solvation = -16.264397 kcal Electronic energy + Delta-G solvation = -14765.374994 eV Core-core repulsion = 12476.356791 eV Total energy + Delta-G solvation = -2289.018203 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.27101 -35.12251 -33.34268 -32.86514 -30.13079 -28.27472 -26.44695 -24.50527 -22.63794 -21.20958 -20.22794 -19.33707 -16.78496 -15.98650 -15.52281 -14.94725 -14.66859 -13.87218 -13.68755 -13.51853 -13.31236 -12.76788 -12.17344 -12.09851 -11.90684 -11.76021 -11.33580 -11.13531 -10.78662 -10.68294 -10.48811 -10.14399 -10.09421 -9.77847 -9.56545 -8.72587 -8.52393 -8.26835 -7.74540 -6.32496 -4.00787 3.45448 3.49254 3.64918 4.17213 4.56547 4.66770 4.85952 4.94898 5.21752 5.33574 5.45411 5.53800 5.57490 5.71965 5.77641 5.88129 5.99168 6.03226 6.10140 6.17513 6.24494 6.36387 6.37835 6.45986 6.55278 6.89508 7.08096 7.32905 7.39049 7.48869 7.76421 7.78393 8.29108 8.51172 8.93171 9.71556 11.08749 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052182 B = 0.006837 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.456255 B = 4094.626511 C = 4458.079133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.088 3.912 3 H 0.040 0.960 4 C 0.098 3.902 5 H 0.043 0.957 6 N -0.849 5.849 7 C -0.111 4.111 8 C -0.115 4.115 9 C 0.054 3.946 10 N -0.536 5.536 11 C 0.066 3.934 12 C 0.017 3.983 13 C -0.603 4.603 14 H 0.047 0.953 15 C 0.015 3.985 16 N -0.914 5.914 17 Si 1.071 2.929 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.284 1.284 21 H 0.062 0.938 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.338 0.662 25 H 0.340 0.660 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.026 0.974 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.020 0.980 34 H 0.007 0.993 35 H 0.014 0.986 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.981 3.094 -14.715 15.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 H 0.058 0.942 4 C -0.013 4.013 5 H 0.061 0.939 6 N -0.381 5.381 7 C -0.149 4.149 8 C -0.154 4.154 9 C -0.074 4.074 10 N -0.261 5.261 11 C -0.060 4.060 12 C -0.020 4.020 13 C -0.641 4.641 14 H 0.065 0.935 15 C -0.188 4.188 16 N -0.550 5.550 17 Si 0.900 3.100 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.210 1.210 21 H 0.081 0.919 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.150 0.850 25 H 0.155 0.845 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.038 0.962 34 H 0.025 0.975 35 H 0.033 0.967 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.025 2.974 -12.845 13.224 hybrid contribution -0.020 0.258 -1.837 1.855 sum 1.005 3.231 -14.682 15.067 Atomic orbital electron populations 1.21957 0.94915 1.02612 1.01252 1.21478 0.95044 0.95535 0.90058 0.94186 1.21318 0.95005 0.95375 0.89598 0.93922 1.58753 1.16915 1.58232 1.04173 1.21582 0.94660 1.01048 0.97614 1.21576 0.99532 1.00277 0.93999 1.22088 0.88083 0.98378 0.98807 1.62016 1.06604 1.55223 1.02291 1.22266 0.98602 0.96448 0.88723 1.19199 0.96218 0.94965 0.91655 1.22045 1.40061 1.07467 0.94570 0.93482 1.25818 0.95922 0.95359 1.01743 1.70737 1.34615 1.17061 1.32604 0.83517 0.76187 0.74943 0.75372 1.21467 1.21566 1.21012 0.91911 0.92595 0.91901 0.84989 0.84538 0.92479 0.91688 0.91271 0.91654 0.95576 0.89932 0.91300 0.96196 0.97528 0.96733 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.44 37.16 0.31 -1.86 16 2 C 0.09 1.39 2.15 -67.72 -0.15 1.24 16 3 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 4 C 0.10 1.31 2.92 -67.63 -0.20 1.12 16 5 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 6 N -0.85 -9.34 9.23 -4.59 -0.04 -9.38 16 7 C -0.11 -1.42 5.58 -26.61 -0.15 -1.57 16 8 C -0.12 -1.62 6.09 -26.66 -0.16 -1.78 16 9 C 0.05 0.95 5.30 -3.83 -0.02 0.93 16 10 N -0.54 -10.01 4.46 -226.69 -1.01 -11.02 16 11 C 0.07 1.45 4.68 -3.82 -0.02 1.43 16 12 C 0.02 0.45 4.30 -27.88 -0.12 0.33 16 13 C -0.60 -17.56 9.11 -34.44 -0.31 -17.87 16 14 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 15 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 16 N -0.91 -28.53 13.65 55.43 0.76 -27.77 16 17 Si 1.07 25.76 29.90 -169.99 -5.08 20.68 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H 0.06 0.97 6.43 -51.93 -0.33 0.63 16 22 H 0.06 0.66 6.27 -51.93 -0.33 0.33 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.34 3.05 9.04 -39.29 -0.36 2.69 16 25 H 0.34 3.40 6.94 -39.29 -0.27 3.13 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 1.59 6.40 -51.93 -0.33 1.25 16 32 H 0.07 1.49 5.61 -51.93 -0.29 1.19 16 33 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.01 0.18 6.44 -51.93 -0.33 -0.15 16 35 H 0.01 0.41 8.01 -51.93 -0.42 -0.01 16 36 H 0.27 8.42 7.22 -40.82 -0.29 8.13 16 LS Contribution 275.93 15.07 4.16 4.16 Total: -1.00 -31.00 275.93 -8.09 -39.09 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.96 Total: 1.92 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -0.91 Total: -17.67 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -0.30 Total: -48.17 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.68 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.00 -8.09 -39.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306739093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.827 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds