Wall clock time and date at job start Mon Mar 30 2020 02:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.45719 * 2 1 4 4 C 1.53039 * 109.45927 * 240.02459 * 2 1 3 5 5 H 1.08997 * 109.50964 * 300.75260 * 4 2 1 6 6 N 1.46909 * 109.50073 * 60.86935 * 4 2 1 7 7 C 1.53116 * 109.27911 * 180.80685 * 4 2 1 8 8 C 1.53112 * 109.16138 * 57.65412 * 7 4 2 9 9 C 1.53035 * 109.28189 * 302.35059 * 8 7 4 10 10 N 1.46841 * 109.46107 * 119.97886 * 2 1 3 11 11 C 1.46904 * 110.99971 * 305.84837 * 10 2 1 12 12 C 1.53003 * 109.47270 * 165.83035 * 11 10 2 13 13 C 1.50694 * 109.46919 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00671 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99688 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00417 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00110 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47293 * 89.99860 * 17 15 13 19 19 H 1.48503 * 109.47020 * 330.00263 * 17 15 13 20 20 H 1.48499 * 109.47402 * 209.99904 * 17 15 13 21 21 H 1.09000 * 109.46546 * 306.73617 * 1 2 3 22 22 H 1.09003 * 109.47173 * 66.73336 * 1 2 3 23 23 H 1.08998 * 109.47644 * 186.73581 * 1 2 3 24 24 H 1.00903 * 110.99618 * 179.97438 * 6 4 2 25 25 H 1.00900 * 110.99703 * 303.94729 * 6 4 2 26 26 H 1.08999 * 109.52585 * 177.56369 * 7 4 2 27 27 H 1.09004 * 109.52448 * 297.74929 * 7 4 2 28 28 H 1.09011 * 109.50151 * 62.28777 * 8 7 4 29 29 H 1.08996 * 109.50599 * 182.36226 * 8 7 4 30 30 H 1.09004 * 109.45930 * 299.16325 * 9 8 7 31 31 H 1.08999 * 109.46423 * 179.19133 * 9 8 7 32 32 H 1.08998 * 109.46922 * 45.83035 * 11 10 2 33 33 H 1.08994 * 109.47217 * 285.83408 * 11 10 2 34 34 H 1.09007 * 109.46924 * 60.00250 * 12 11 10 35 35 H 1.08996 * 109.46848 * 300.00542 * 12 11 10 36 36 H 0.97005 * 119.99758 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2500 5 1 1.6658 -1.7447 -1.2577 6 7 1.5676 -0.0163 -2.4494 7 6 3.5709 -0.7362 -1.2357 8 6 4.0547 -1.4189 0.0466 9 6 3.4865 -0.6779 1.2590 10 7 2.0193 -0.6918 1.1993 11 6 1.4374 -0.1106 2.4165 12 6 1.6772 -1.0538 3.5971 13 6 1.0797 -0.4579 4.8456 14 1 0.5794 0.4981 4.8016 15 6 1.1728 -1.1327 6.0443 16 7 1.7826 -2.2967 6.0981 17 14 0.4328 -0.3937 7.5921 18 1 -0.9750 -0.8451 7.7320 19 1 0.4707 1.0880 7.5002 20 1 1.2144 -0.8365 8.7746 21 1 -0.3632 0.6147 0.8236 22 1 -0.3634 0.4059 -0.9441 23 1 -0.3634 -1.0205 0.1205 24 1 1.8919 -0.4735 -3.2885 25 1 0.5620 0.0662 -2.4478 26 1 3.9378 -1.2864 -2.1021 27 1 3.9457 0.2869 -1.2673 28 1 3.7123 -2.4538 0.0593 29 1 5.1438 -1.3956 0.0826 30 1 3.8404 0.3531 1.2531 31 1 3.8174 -1.1701 2.1734 32 1 0.3657 0.0298 2.2756 33 1 1.9063 0.8521 2.6195 34 1 2.7490 -1.1942 3.7380 35 1 1.2083 -2.0166 3.3940 36 1 2.1665 -2.6807 5.2943 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306739093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:59 Heat of formation + Delta-G solvation = -38.837633 kcal Electronic energy + Delta-G solvation = -14766.353843 eV Core-core repulsion = 12476.356791 eV Total energy + Delta-G solvation = -2289.997052 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.58849 -36.67842 -35.12996 -34.24109 -31.73221 -29.80604 -27.66804 -26.38683 -24.41171 -22.46317 -21.91081 -20.58909 -18.94197 -17.17331 -16.87928 -16.23860 -15.90538 -15.68542 -15.27542 -15.06605 -14.74400 -14.39635 -13.77115 -13.42103 -13.40915 -13.18616 -12.90095 -12.67462 -12.36315 -12.11989 -11.94058 -11.85898 -11.75822 -11.35726 -11.13492 -10.70048 -10.53770 -9.64105 -9.28195 -8.71171 -6.41087 1.51468 1.61289 1.79038 2.54499 2.85767 3.14915 3.58297 3.70936 3.81036 4.03400 4.07370 4.27777 4.33825 4.37954 4.45279 4.56535 4.67084 4.74992 4.85198 4.87950 4.91557 4.98199 5.04635 5.13463 5.18203 5.29934 5.36178 5.42332 5.88822 6.10741 6.15373 6.20107 6.32801 6.56484 6.61891 7.41613 8.70024 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052182 B = 0.006837 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.456255 B = 4094.626511 C = 4458.079133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.085 3.915 3 H 0.031 0.969 4 C 0.106 3.894 5 H 0.037 0.963 6 N -0.846 5.846 7 C -0.106 4.106 8 C -0.108 4.108 9 C 0.052 3.948 10 N -0.544 5.544 11 C 0.082 3.918 12 C 0.024 3.976 13 C -0.621 4.621 14 H 0.049 0.951 15 C -0.038 4.038 16 N -0.936 5.936 17 Si 1.122 2.878 18 H -0.270 1.270 19 H -0.269 1.269 20 H -0.281 1.281 21 H 0.048 0.952 22 H 0.087 0.913 23 H 0.054 0.946 24 H 0.353 0.647 25 H 0.348 0.652 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.025 0.975 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.012 0.988 34 H -0.012 1.012 35 H -0.011 1.011 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.564 3.964 -16.028 16.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 H 0.049 0.951 4 C -0.006 4.006 5 H 0.055 0.945 6 N -0.380 5.380 7 C -0.144 4.144 8 C -0.147 4.147 9 C -0.076 4.076 10 N -0.269 5.269 11 C -0.045 4.045 12 C -0.013 4.013 13 C -0.659 4.659 14 H 0.068 0.932 15 C -0.235 4.235 16 N -0.574 5.574 17 Si 0.943 3.057 18 H -0.196 1.196 19 H -0.194 1.194 20 H -0.207 1.207 21 H 0.067 0.933 22 H 0.105 0.895 23 H 0.073 0.927 24 H 0.167 0.833 25 H 0.163 0.837 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.030 0.970 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.610 3.843 -14.211 14.734 hybrid contribution 0.132 -0.017 -1.489 1.495 sum 0.742 3.826 -15.700 16.177 Atomic orbital electron populations 1.21938 0.93960 1.02046 1.02453 1.21606 0.95902 0.95036 0.89780 0.95093 1.21157 0.95428 0.94755 0.89269 0.94506 1.58682 1.17562 1.57866 1.03841 1.21557 0.94148 1.01091 0.97617 1.21541 1.00641 0.99462 0.93016 1.22126 0.87487 0.98555 0.99476 1.61964 1.07379 1.55458 1.02114 1.21911 0.99024 0.94744 0.88855 1.19056 0.94466 0.94656 0.93161 1.22462 1.39989 1.07670 0.95798 0.93223 1.27484 0.95442 0.94949 1.05630 1.70880 1.36207 1.18380 1.31889 0.82883 0.76172 0.75318 0.71353 1.19590 1.19420 1.20679 0.93254 0.89461 0.92704 0.83276 0.83739 0.89843 0.91914 0.91762 0.89588 0.95647 0.92810 0.90943 0.97006 0.99375 0.99289 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 8.44 71.98 0.61 -3.45 16 2 C 0.09 2.60 2.15 44.94 0.10 2.70 16 3 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 4 C 0.11 2.58 2.92 44.97 0.13 2.71 16 5 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 6 N -0.85 -15.95 9.23 -168.45 -1.56 -17.50 16 7 C -0.11 -2.44 5.58 30.67 0.17 -2.27 16 8 C -0.11 -2.90 6.09 30.64 0.19 -2.71 16 9 C 0.05 1.82 5.30 86.32 0.46 2.27 16 10 N -0.54 -20.52 4.46 -871.11 -3.89 -24.41 16 11 C 0.08 3.69 4.68 86.30 0.40 4.09 16 12 C 0.02 1.32 4.30 29.85 0.13 1.45 16 13 C -0.62 -36.84 9.11 25.60 0.23 -36.60 16 14 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 15 C -0.04 -2.25 5.46 84.65 0.46 -1.79 16 16 N -0.94 -59.76 13.65 21.45 0.29 -59.47 16 17 Si 1.12 51.36 29.90 68.60 2.05 53.41 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H 0.05 1.48 6.43 -2.39 -0.02 1.47 16 22 H 0.09 1.84 6.27 -2.39 -0.01 1.82 16 23 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.35 5.10 9.04 -89.69 -0.81 4.29 16 25 H 0.35 5.81 6.94 -89.69 -0.62 5.19 16 26 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 2.17 6.40 -2.39 -0.02 2.16 16 32 H 0.07 3.17 5.61 -2.39 -0.01 3.16 16 33 H 0.01 0.54 8.08 -2.39 -0.02 0.52 16 34 H -0.01 -0.70 6.44 -2.38 -0.02 -0.71 16 35 H -0.01 -0.67 8.01 -2.39 -0.02 -0.69 16 36 H 0.25 16.59 7.22 -92.70 -0.67 15.92 16 Total: -1.00 -67.54 275.93 -0.49 -68.04 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -0.27 Total: 13.52 kcal Atomic # 6 Polarization: -36.46 SS G_CDS: 2.88 Total: -33.58 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -5.15 Total: -101.39 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.05 Total: 53.41 kcal Total: -67.54 -0.49 -68.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306739093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.198 kcal (2) G-P(sol) polarization free energy of solvation -67.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds