Wall clock time and date at job start Mon Mar 30 2020 02:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.45357 * 2 1 4 4 N 1.46849 * 109.45908 * 119.97169 * 2 1 3 5 5 C 1.46840 * 111.20125 * 58.27728 * 4 2 1 6 6 C 1.53031 * 109.52620 * 61.73722 * 5 4 2 7 7 C 1.53125 * 109.27961 * 300.82248 * 6 5 4 8 8 C 1.53036 * 109.46128 * 240.02355 * 2 1 3 9 9 H 1.08999 * 109.53420 * 179.20536 * 8 2 1 10 10 N 1.46899 * 109.50420 * 59.10529 * 8 2 1 11 11 C 1.46904 * 110.99904 * 187.93539 * 10 8 2 12 12 C 1.46897 * 111.00070 * 63.98055 * 10 8 2 13 13 C 1.50698 * 109.47502 * 190.00031 * 12 10 8 14 14 H 1.08005 * 119.99481 * 0.02562 * 13 12 10 15 15 C 1.37877 * 120.00232 * 180.02562 * 13 12 10 16 16 N 1.31511 * 119.99899 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99790 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47254 * 89.99909 * 17 15 13 19 19 H 1.48502 * 109.47000 * 209.99881 * 17 15 13 20 20 H 1.48498 * 109.47164 * 329.99463 * 17 15 13 21 21 H 1.09001 * 109.47068 * 177.23194 * 1 2 3 22 22 H 1.08994 * 109.47175 * 297.23153 * 1 2 3 23 23 H 1.08995 * 109.46983 * 57.23022 * 1 2 3 24 24 H 1.00901 * 110.99615 * 182.37157 * 4 2 1 25 25 H 1.09002 * 109.45754 * 301.72402 * 5 4 2 26 26 H 1.08993 * 109.45511 * 181.75267 * 5 4 2 27 27 H 1.09002 * 109.50987 * 180.88168 * 6 5 4 28 28 H 1.08999 * 109.50517 * 60.76638 * 6 5 4 29 29 H 1.08994 * 109.52385 * 297.74653 * 7 6 5 30 30 H 1.09003 * 109.52427 * 177.55889 * 7 6 5 31 31 H 1.09001 * 109.47382 * 303.62949 * 11 10 8 32 32 H 1.08996 * 109.47173 * 63.63175 * 11 10 8 33 33 H 1.08999 * 109.46641 * 183.63071 * 11 10 8 34 34 H 1.08997 * 109.47442 * 310.00264 * 12 10 8 35 35 H 1.09006 * 109.46991 * 70.00156 * 12 10 8 36 36 H 0.97000 * 120.00121 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 7 2.0192 -0.6917 1.1994 5 6 1.5174 -2.0704 1.2592 6 6 2.0269 -2.8531 0.0469 7 6 1.5442 -2.1696 -1.2355 8 6 2.0399 -0.7210 -1.2499 9 1 3.1298 -0.7093 -1.2583 10 7 1.5329 -0.0411 -2.4494 11 6 1.8442 -0.8102 -3.6616 12 6 2.0622 1.3260 -2.5429 13 6 1.3394 2.0709 -3.6355 14 1 0.5641 1.5781 -4.2033 15 6 1.6679 3.3815 -3.9102 16 7 2.6117 3.9817 -3.2184 17 14 0.7715 4.3049 -5.2641 18 1 -0.4206 4.9834 -4.6950 19 1 1.6807 5.3175 -5.8584 20 1 0.3418 3.3480 -6.3152 21 1 -0.3633 -1.0265 -0.0496 22 1 -0.3633 0.4702 0.9137 23 1 -0.3633 0.5562 -0.8641 24 1 3.0271 -0.6716 1.2426 25 1 0.4274 -2.0607 1.2533 26 1 1.8713 -2.5463 2.1737 27 1 1.6415 -3.8721 0.0833 28 1 3.1166 -2.8751 0.0596 29 1 0.4548 -2.1822 -1.2671 30 1 1.9409 -2.6990 -2.1019 31 1 2.9197 -0.9774 -3.7197 32 1 1.3288 -1.7699 -3.6254 33 1 1.5150 -0.2540 -4.5393 34 1 1.9128 1.8393 -1.5930 35 1 3.1272 1.2884 -2.7720 36 1 2.8426 4.9038 -3.4114 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306827556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:06 Heat of formation + Delta-G solvation = -0.113898 kcal Electronic energy + Delta-G solvation = -15131.674257 eV Core-core repulsion = 12843.356392 eV Total energy + Delta-G solvation = -2288.317865 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.41255 -35.64518 -32.57783 -31.80776 -30.06025 -27.47248 -26.59883 -25.00448 -22.52800 -21.84094 -20.38638 -18.43692 -16.54950 -15.97038 -15.16444 -14.78776 -14.53005 -14.18994 -13.61665 -12.93979 -12.82806 -12.42107 -11.95659 -11.83397 -11.77129 -11.38244 -11.16154 -11.06854 -10.83488 -10.80871 -10.57175 -10.42177 -10.32882 -9.94268 -9.52947 -9.17543 -8.41050 -8.04406 -7.20766 -6.01612 -4.02605 3.32717 3.38648 3.41960 4.40991 4.53428 4.87909 5.06476 5.17243 5.30563 5.34259 5.49932 5.63375 5.75959 5.78871 5.97391 6.04098 6.10182 6.16923 6.18061 6.26833 6.33871 6.54602 6.57914 6.71564 6.77400 6.92495 7.22519 7.35754 7.45680 7.65643 7.82257 8.11501 8.22458 8.57601 9.05046 9.61397 11.09251 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049202 B = 0.008071 C = 0.007591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.940562 B = 3468.555050 C = 3687.708405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.089 3.911 3 H 0.089 0.911 4 N -0.682 5.682 5 C 0.053 3.947 6 C -0.155 4.155 7 C -0.116 4.116 8 C 0.057 3.943 9 H 0.024 0.976 10 N -0.529 5.529 11 C 0.035 3.965 12 C 0.190 3.810 13 C -0.506 4.506 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.274 1.274 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.078 0.922 24 H 0.335 0.665 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.006 0.994 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.035 0.965 35 H -0.013 1.013 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.338 -11.159 5.719 12.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.020 4.020 3 H 0.107 0.893 4 N -0.310 5.310 5 C -0.076 4.076 6 C -0.195 4.195 7 C -0.154 4.154 8 C -0.054 4.054 9 H 0.042 0.958 10 N -0.254 5.254 11 C -0.113 4.113 12 C 0.065 3.935 13 C -0.545 4.545 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.199 1.199 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.097 0.903 24 H 0.152 0.848 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.004 0.996 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.260 -10.681 6.193 12.552 hybrid contribution 1.198 0.082 -1.589 1.992 sum -1.061 -10.599 4.605 11.605 Atomic orbital electron populations 1.21729 0.93932 1.01239 1.01973 1.21608 0.96738 0.97809 0.85872 0.89325 1.60839 1.14780 1.15259 1.40107 1.22037 1.01003 0.88317 0.96281 1.22278 1.00657 0.99685 0.96852 1.21726 1.01795 0.95240 0.96606 1.22247 0.95845 0.93719 0.93580 0.95835 1.62164 1.59229 1.04111 0.99902 1.22249 0.96943 0.97246 0.94897 1.19783 0.93035 0.82766 0.97908 1.21158 1.19539 0.96508 1.17276 0.91908 1.24984 0.95305 0.97594 0.96733 1.69957 1.30600 1.12469 1.40765 0.86515 0.79460 0.79540 0.81988 1.20610 1.21371 1.19929 0.93419 0.93459 0.90316 0.84776 0.90563 0.91506 0.91928 0.92561 0.90879 0.92374 0.97513 0.93486 0.90673 0.94683 0.99553 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.36 37.16 0.31 -1.92 16 2 C 0.09 1.57 2.96 -67.72 -0.20 1.37 16 3 H 0.09 1.80 6.34 -51.93 -0.33 1.47 16 4 N -0.68 -10.05 6.67 -106.77 -0.71 -10.76 16 5 C 0.05 0.67 6.26 -3.84 -0.02 0.65 16 6 C -0.15 -1.92 6.08 -26.65 -0.16 -2.08 16 7 C -0.12 -1.74 4.39 -26.61 -0.12 -1.86 16 8 C 0.06 1.03 1.78 -67.63 -0.12 0.91 16 9 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 10 N -0.53 -11.33 3.87 -236.24 -0.91 -12.24 16 11 C 0.04 0.70 8.73 60.07 0.52 1.22 16 12 C 0.19 4.93 4.58 -4.98 -0.02 4.90 16 13 C -0.51 -14.17 8.41 -34.44 -0.29 -14.46 16 14 H 0.06 1.74 7.16 -52.48 -0.38 1.37 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 17 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H 0.05 0.74 4.81 -51.93 -0.25 0.49 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.08 1.53 7.67 -51.93 -0.40 1.13 16 24 H 0.34 4.65 8.86 -39.29 -0.35 4.30 16 25 H 0.08 0.98 6.25 -51.93 -0.32 0.65 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.12 6.49 -51.93 -0.34 0.79 16 30 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 31 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.05 0.80 6.49 -51.93 -0.34 0.46 16 33 H 0.07 1.60 6.69 -51.93 -0.35 1.25 16 34 H 0.04 0.96 6.01 -51.93 -0.31 0.65 16 35 H -0.01 -0.38 8.12 -51.93 -0.42 -0.80 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 270.29 15.07 4.07 4.07 Total: -1.00 -28.94 270.29 -7.83 -36.76 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -5.79 Total: 1.28 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -0.20 Total: -9.80 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.89 Total: -48.99 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.94 -7.83 -36.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306827556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.651 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds