Wall clock time and date at job start Mon Mar 30 2020 02:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.45357 * 2 1 4 4 N 1.46849 * 109.45908 * 119.97169 * 2 1 3 5 5 C 1.46840 * 111.20125 * 58.27728 * 4 2 1 6 6 C 1.53031 * 109.52620 * 61.73722 * 5 4 2 7 7 C 1.53125 * 109.27961 * 300.82248 * 6 5 4 8 8 C 1.53036 * 109.46128 * 240.02355 * 2 1 3 9 9 H 1.08999 * 109.53420 * 179.20536 * 8 2 1 10 10 N 1.46899 * 109.50420 * 59.10529 * 8 2 1 11 11 C 1.46904 * 110.99904 * 187.93539 * 10 8 2 12 12 C 1.46897 * 111.00070 * 63.98055 * 10 8 2 13 13 C 1.50698 * 109.47502 * 190.00031 * 12 10 8 14 14 H 1.08005 * 119.99481 * 0.02562 * 13 12 10 15 15 C 1.37877 * 120.00232 * 180.02562 * 13 12 10 16 16 N 1.31511 * 119.99899 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99790 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47254 * 89.99909 * 17 15 13 19 19 H 1.48502 * 109.47000 * 209.99881 * 17 15 13 20 20 H 1.48498 * 109.47164 * 329.99463 * 17 15 13 21 21 H 1.09001 * 109.47068 * 177.23194 * 1 2 3 22 22 H 1.08994 * 109.47175 * 297.23153 * 1 2 3 23 23 H 1.08995 * 109.46983 * 57.23022 * 1 2 3 24 24 H 1.00901 * 110.99615 * 182.37157 * 4 2 1 25 25 H 1.09002 * 109.45754 * 301.72402 * 5 4 2 26 26 H 1.08993 * 109.45511 * 181.75267 * 5 4 2 27 27 H 1.09002 * 109.50987 * 180.88168 * 6 5 4 28 28 H 1.08999 * 109.50517 * 60.76638 * 6 5 4 29 29 H 1.08994 * 109.52385 * 297.74653 * 7 6 5 30 30 H 1.09003 * 109.52427 * 177.55889 * 7 6 5 31 31 H 1.09001 * 109.47382 * 303.62949 * 11 10 8 32 32 H 1.08996 * 109.47173 * 63.63175 * 11 10 8 33 33 H 1.08999 * 109.46641 * 183.63071 * 11 10 8 34 34 H 1.08997 * 109.47442 * 310.00264 * 12 10 8 35 35 H 1.09006 * 109.46991 * 70.00156 * 12 10 8 36 36 H 0.97000 * 120.00121 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 7 2.0192 -0.6917 1.1994 5 6 1.5174 -2.0704 1.2592 6 6 2.0269 -2.8531 0.0469 7 6 1.5442 -2.1696 -1.2355 8 6 2.0399 -0.7210 -1.2499 9 1 3.1298 -0.7093 -1.2583 10 7 1.5329 -0.0411 -2.4494 11 6 1.8442 -0.8102 -3.6616 12 6 2.0622 1.3260 -2.5429 13 6 1.3394 2.0709 -3.6355 14 1 0.5641 1.5781 -4.2033 15 6 1.6679 3.3815 -3.9102 16 7 2.6117 3.9817 -3.2184 17 14 0.7715 4.3049 -5.2641 18 1 -0.4206 4.9834 -4.6950 19 1 1.6807 5.3175 -5.8584 20 1 0.3418 3.3480 -6.3152 21 1 -0.3633 -1.0265 -0.0496 22 1 -0.3633 0.4702 0.9137 23 1 -0.3633 0.5562 -0.8641 24 1 3.0271 -0.6716 1.2426 25 1 0.4274 -2.0607 1.2533 26 1 1.8713 -2.5463 2.1737 27 1 1.6415 -3.8721 0.0833 28 1 3.1166 -2.8751 0.0596 29 1 0.4548 -2.1822 -1.2671 30 1 1.9409 -2.6990 -2.1019 31 1 2.9197 -0.9774 -3.7197 32 1 1.3288 -1.7699 -3.6254 33 1 1.5150 -0.2540 -4.5393 34 1 1.9128 1.8393 -1.5930 35 1 3.1272 1.2884 -2.7720 36 1 2.8426 4.9038 -3.4114 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306827556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:06 Heat of formation + Delta-G solvation = -20.881904 kcal Electronic energy + Delta-G solvation = -15132.574825 eV Core-core repulsion = 12843.356392 eV Total energy + Delta-G solvation = -2289.218433 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.78349 -37.26518 -34.66132 -33.04876 -31.50207 -29.31019 -28.08815 -26.72094 -24.13839 -23.17986 -21.95913 -19.82027 -18.57600 -17.42626 -16.74269 -16.58357 -15.82474 -15.66159 -15.26862 -14.60752 -14.22899 -13.95487 -13.67502 -13.29909 -13.11328 -12.93476 -12.85106 -12.60641 -12.49905 -12.39963 -12.23070 -12.03956 -11.75548 -11.49995 -11.19824 -11.02329 -10.58499 -9.26974 -9.00403 -8.20403 -6.30205 1.40320 1.42027 1.52751 2.39760 3.11770 3.16737 3.49695 3.79417 3.95178 4.09035 4.26309 4.30246 4.49927 4.56665 4.61908 4.65946 4.70999 4.87217 4.99575 5.01853 5.07011 5.10159 5.17984 5.19217 5.27573 5.32801 5.39619 5.53978 5.65429 6.04852 6.13531 6.33157 6.49585 6.66666 6.86257 7.39296 8.90739 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049202 B = 0.008071 C = 0.007591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.940562 B = 3468.555050 C = 3687.708405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.095 3.905 3 H 0.048 0.952 4 N -0.682 5.682 5 C 0.052 3.948 6 C -0.147 4.147 7 C -0.109 4.109 8 C 0.056 3.944 9 H 0.007 0.993 10 N -0.532 5.532 11 C 0.038 3.962 12 C 0.209 3.791 13 C -0.522 4.522 14 H 0.063 0.937 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.264 1.264 21 H 0.068 0.932 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.340 0.660 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.004 0.996 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.012 0.988 35 H -0.050 1.050 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.378 -12.933 5.825 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.016 4.016 3 H 0.066 0.934 4 N -0.311 5.311 5 C -0.077 4.077 6 C -0.186 4.186 7 C -0.147 4.147 8 C -0.055 4.055 9 H 0.025 0.975 10 N -0.257 5.257 11 C -0.110 4.110 12 C 0.082 3.918 13 C -0.560 4.560 14 H 0.081 0.919 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.793 3.207 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.188 1.188 21 H 0.087 0.913 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.157 0.843 25 H 0.096 0.904 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.022 0.978 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.030 0.970 35 H -0.032 1.032 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.304 -12.485 6.308 14.373 hybrid contribution 1.557 0.585 -1.561 2.281 sum -1.746 -11.900 4.747 12.931 Atomic orbital electron populations 1.21614 0.93338 1.02075 1.00894 1.21377 0.97084 0.96165 0.86939 0.93352 1.60792 1.15227 1.17021 1.38073 1.22174 1.01126 0.86763 0.97621 1.22231 1.00858 1.00689 0.94855 1.21692 1.01756 0.92623 0.98638 1.22373 0.94913 0.95901 0.92276 0.97525 1.62108 1.59010 1.02656 1.01890 1.22257 0.97169 0.98163 0.93429 1.19392 0.90748 0.85445 0.96189 1.21472 1.19637 0.97130 1.17776 0.91851 1.25918 0.96032 0.98576 0.99205 1.70092 1.32086 1.12907 1.42459 0.85389 0.78210 0.78138 0.78921 1.19825 1.20859 1.18815 0.91290 0.92821 0.93294 0.84276 0.90401 0.88903 0.89084 0.92342 0.90749 0.91869 0.97776 0.89995 0.92501 0.96980 1.03240 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.09 8.36 71.98 0.60 -3.49 16 2 C 0.09 3.36 2.96 44.94 0.13 3.49 16 3 H 0.05 2.09 6.34 -2.39 -0.02 2.08 16 4 N -0.68 -19.29 6.67 -491.71 -3.28 -22.57 16 5 C 0.05 1.14 6.26 86.32 0.54 1.68 16 6 C -0.15 -3.10 6.08 30.65 0.19 -2.92 16 7 C -0.11 -3.01 4.39 30.68 0.13 -2.88 16 8 C 0.06 2.03 1.78 44.97 0.08 2.11 16 9 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 10 N -0.53 -23.20 3.87 -901.32 -3.49 -26.69 16 11 C 0.04 1.50 8.73 127.69 1.11 2.61 16 12 C 0.21 11.34 4.58 85.56 0.39 11.73 16 13 C -0.52 -29.99 8.41 25.60 0.22 -29.78 16 14 H 0.06 3.56 7.16 -2.91 -0.02 3.54 16 15 C 0.00 0.03 5.46 84.66 0.46 0.49 16 16 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 17 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 21 H 0.07 2.00 4.81 -2.39 -0.01 1.98 16 22 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.05 1.93 7.67 -2.39 -0.02 1.91 16 24 H 0.34 9.13 8.86 -89.69 -0.79 8.34 16 25 H 0.08 1.71 6.25 -2.39 -0.01 1.69 16 26 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 29 H 0.07 2.06 6.49 -2.39 -0.02 2.04 16 30 H 0.06 1.69 6.56 -2.39 -0.02 1.67 16 31 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.08 2.63 6.49 -2.39 -0.02 2.62 16 33 H 0.06 2.42 6.69 -2.39 -0.02 2.41 16 34 H 0.01 0.71 6.01 -2.39 -0.01 0.70 16 35 H -0.05 -3.02 8.12 -2.38 -0.02 -3.04 16 36 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -63.84 270.29 -0.34 -64.18 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.26 Total: 12.09 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 3.86 Total: -16.94 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -6.48 Total: -106.19 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -63.84 -0.34 -64.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306827556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.294 kcal (2) G-P(sol) polarization free energy of solvation -63.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds