Wall clock time and date at job start Mon Mar 30 2020 02:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.45677 * 2 1 4 4 N 1.46840 * 109.46508 * 240.02594 * 2 1 3 5 5 C 1.46846 * 111.20136 * 301.72556 * 4 2 1 6 6 C 1.53037 * 109.52321 * 298.26178 * 5 4 2 7 7 C 1.53114 * 109.28125 * 59.17541 * 6 5 4 8 8 C 1.53044 * 109.46074 * 119.97210 * 2 1 3 9 9 H 1.09000 * 109.50385 * 180.77959 * 8 2 1 10 10 N 1.46904 * 109.50118 * 300.89915 * 8 2 1 11 11 C 1.46902 * 110.99540 * 169.56351 * 10 8 2 12 12 C 1.46897 * 111.00000 * 293.51036 * 10 8 2 13 13 C 1.50694 * 109.47130 * 170.00240 * 12 10 8 14 14 H 1.07996 * 120.00221 * 0.02562 * 13 12 10 15 15 C 1.37877 * 119.99854 * 179.97438 * 13 12 10 16 16 N 1.31510 * 120.00493 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00004 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.47028 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47159 * 120.00222 * 17 15 13 20 20 H 1.48497 * 109.47679 * 240.00504 * 17 15 13 21 21 H 1.09000 * 109.47154 * 186.11313 * 1 2 3 22 22 H 1.08994 * 109.47338 * 306.12283 * 1 2 3 23 23 H 1.09001 * 109.46892 * 66.11975 * 1 2 3 24 24 H 1.00910 * 111.00416 * 177.63056 * 4 2 1 25 25 H 1.09001 * 109.45704 * 58.27632 * 5 4 2 26 26 H 1.08998 * 109.46574 * 178.25074 * 5 4 2 27 27 H 1.09003 * 109.49762 * 179.11748 * 6 5 4 28 28 H 1.08999 * 109.49916 * 299.22977 * 6 5 4 29 29 H 1.09007 * 109.52341 * 62.24958 * 7 6 5 30 30 H 1.09000 * 109.52435 * 182.44229 * 7 6 5 31 31 H 1.08997 * 109.47453 * 54.14481 * 11 10 8 32 32 H 1.08999 * 109.47056 * 174.15141 * 11 10 8 33 33 H 1.09000 * 109.46651 * 294.14722 * 11 10 8 34 34 H 1.09004 * 109.47421 * 290.01004 * 12 10 8 35 35 H 1.09007 * 109.46842 * 50.00416 * 12 10 8 36 36 H 0.96998 * 120.00335 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 7 2.0193 -0.6917 -1.1993 5 6 1.5175 -2.0705 -1.2591 6 6 2.0269 -2.8531 -0.0467 7 6 1.5442 -2.1696 1.2356 8 6 2.0399 -0.7209 1.2500 9 1 3.1298 -0.7092 1.2578 10 7 1.5328 -0.0409 2.4494 11 6 1.7917 -0.8384 3.6557 12 6 2.1082 1.3048 2.5746 13 6 1.3901 2.0589 3.6638 14 1 0.5868 1.5857 4.2089 15 6 1.7592 3.3527 3.9652 16 7 2.7377 3.9289 3.3018 17 14 0.8685 4.2879 5.3149 18 1 -0.1855 3.4230 5.9037 19 1 1.8377 4.6751 6.3713 20 1 0.2454 5.5086 4.7433 21 1 -0.3633 -1.0218 0.1094 22 1 -0.3634 0.6058 0.8300 23 1 -0.3633 0.4160 -0.9397 24 1 3.0273 -0.6716 -1.2425 25 1 0.4275 -2.0607 -1.2533 26 1 1.8715 -2.5465 -2.1734 27 1 1.6414 -3.8721 -0.0832 28 1 3.1166 -2.8750 -0.0594 29 1 0.4547 -2.1822 1.2672 30 1 1.9408 -2.6989 2.1020 31 1 2.8534 -1.0782 3.7117 32 1 1.5009 -0.2679 4.5377 33 1 1.2126 -1.7609 3.6125 34 1 3.1664 1.2258 2.8242 35 1 1.9966 1.8370 1.6298 36 1 2.9972 4.8392 3.5136 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306827557.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:09 Heat of formation + Delta-G solvation = -0.679906 kcal Electronic energy + Delta-G solvation = -15125.429530 eV Core-core repulsion = 12837.087121 eV Total energy + Delta-G solvation = -2288.342409 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.41142 -35.64823 -32.58153 -31.80728 -30.06800 -27.45757 -26.60982 -25.01910 -22.52023 -21.84031 -20.38791 -18.44305 -16.54177 -15.97518 -15.16739 -14.79562 -14.52249 -14.19694 -13.62178 -12.93074 -12.82893 -12.43252 -11.95396 -11.84091 -11.76225 -11.39058 -11.16639 -11.07313 -10.82699 -10.79993 -10.58970 -10.43314 -10.32758 -9.95024 -9.53615 -9.16097 -8.42071 -8.05245 -7.20429 -6.01936 -4.02888 3.31234 3.38768 3.43423 4.40850 4.53237 4.87858 5.05985 5.17087 5.30372 5.34014 5.49970 5.63072 5.75746 5.78533 5.97226 6.05115 6.09665 6.15767 6.17636 6.25685 6.33693 6.53967 6.57102 6.71890 6.77168 6.91622 7.22312 7.35587 7.45052 7.65378 7.82489 8.11338 8.22418 8.57408 9.05178 9.61222 11.08954 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049335 B = 0.008032 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.416474 B = 3485.386021 C = 3695.552025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.090 3.910 3 H 0.088 0.912 4 N -0.682 5.682 5 C 0.054 3.946 6 C -0.155 4.155 7 C -0.117 4.117 8 C 0.057 3.943 9 H 0.024 0.976 10 N -0.529 5.529 11 C 0.035 3.965 12 C 0.190 3.810 13 C -0.505 4.505 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.284 1.284 21 H 0.047 0.953 22 H 0.076 0.924 23 H 0.046 0.954 24 H 0.335 0.665 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.006 0.994 32 H 0.075 0.925 33 H 0.046 0.954 34 H -0.013 1.013 35 H 0.034 0.966 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.610 -11.107 -5.869 12.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.020 4.020 3 H 0.106 0.894 4 N -0.310 5.310 5 C -0.076 4.076 6 C -0.195 4.195 7 C -0.154 4.154 8 C -0.054 4.054 9 H 0.042 0.958 10 N -0.254 5.254 11 C -0.113 4.113 12 C 0.065 3.935 13 C -0.544 4.544 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.210 1.210 21 H 0.066 0.934 22 H 0.095 0.905 23 H 0.065 0.935 24 H 0.152 0.848 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.025 0.975 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.005 0.995 35 H 0.052 0.948 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.529 -10.615 -6.350 12.625 hybrid contribution 1.220 0.058 1.609 2.020 sum -1.309 -10.557 -4.741 11.646 Atomic orbital electron populations 1.21717 0.93945 1.01451 1.01667 1.21590 0.96707 0.97785 0.85878 0.89400 1.60848 1.14792 1.15260 1.40092 1.22033 1.00974 0.88318 0.96279 1.22279 1.00668 0.99687 0.96843 1.21743 1.01784 0.95259 0.96649 1.22258 0.95888 0.93632 0.93612 0.95778 1.62171 1.58934 1.04153 1.00127 1.22250 0.97012 0.97096 0.94986 1.19780 0.92677 0.83244 0.97778 1.21196 1.17648 0.97781 1.17783 0.91834 1.24988 0.95267 0.97609 0.96781 1.69965 1.28724 1.13860 1.41238 0.86467 0.79579 0.79834 0.81686 1.19690 1.21187 1.20992 0.93392 0.90466 0.93450 0.84770 0.90599 0.91505 0.91926 0.92549 0.90866 0.92352 0.97537 0.90636 0.93491 0.99547 0.94769 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.28 37.16 0.31 -1.90 16 2 C 0.09 1.57 3.02 -67.72 -0.20 1.37 16 3 H 0.09 1.78 6.42 -51.93 -0.33 1.44 16 4 N -0.68 -10.02 6.67 -106.76 -0.71 -10.73 16 5 C 0.05 0.67 6.26 -3.83 -0.02 0.65 16 6 C -0.15 -1.92 6.08 -26.65 -0.16 -2.08 16 7 C -0.12 -1.75 4.30 -26.61 -0.11 -1.86 16 8 C 0.06 1.03 1.79 -67.63 -0.12 0.91 16 9 H 0.02 0.47 8.12 -51.93 -0.42 0.05 16 10 N -0.53 -11.32 3.94 -236.23 -0.93 -12.25 16 11 C 0.04 0.70 8.59 60.07 0.52 1.21 16 12 C 0.19 4.93 4.59 -4.98 -0.02 4.91 16 13 C -0.51 -14.15 8.37 -34.44 -0.29 -14.44 16 14 H 0.06 1.77 7.18 -52.49 -0.38 1.39 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 17 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H 0.05 0.74 4.84 -51.93 -0.25 0.49 16 22 H 0.08 1.49 7.78 -51.93 -0.40 1.08 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.34 4.64 8.86 -39.29 -0.35 4.29 16 25 H 0.08 0.97 6.33 -51.93 -0.33 0.64 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.12 6.42 -51.93 -0.33 0.79 16 30 H 0.06 0.87 6.61 -51.93 -0.34 0.52 16 31 H 0.01 0.12 8.12 -51.93 -0.42 -0.30 16 32 H 0.07 1.60 6.65 -51.93 -0.35 1.26 16 33 H 0.05 0.80 6.64 -51.93 -0.34 0.46 16 34 H -0.01 -0.38 8.12 -51.93 -0.42 -0.80 16 35 H 0.03 0.94 6.12 -51.92 -0.32 0.62 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 270.57 15.07 4.08 4.08 Total: -1.00 -28.98 270.57 -7.88 -36.85 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.82 Total: 1.15 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -0.21 Total: -9.77 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.91 Total: -48.98 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.98 -7.88 -36.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306827557.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.174 kcal (2) G-P(sol) polarization free energy of solvation -28.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds