Wall clock time and date at job start Mon Mar 30 2020 02:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.45677 * 2 1 4 4 N 1.46840 * 109.46508 * 240.02594 * 2 1 3 5 5 C 1.46846 * 111.20136 * 301.72556 * 4 2 1 6 6 C 1.53037 * 109.52321 * 298.26178 * 5 4 2 7 7 C 1.53114 * 109.28125 * 59.17541 * 6 5 4 8 8 C 1.53044 * 109.46074 * 119.97210 * 2 1 3 9 9 H 1.09000 * 109.50385 * 180.77959 * 8 2 1 10 10 N 1.46904 * 109.50118 * 300.89915 * 8 2 1 11 11 C 1.46902 * 110.99540 * 169.56351 * 10 8 2 12 12 C 1.46897 * 111.00000 * 293.51036 * 10 8 2 13 13 C 1.50694 * 109.47130 * 170.00240 * 12 10 8 14 14 H 1.07996 * 120.00221 * 0.02562 * 13 12 10 15 15 C 1.37877 * 119.99854 * 179.97438 * 13 12 10 16 16 N 1.31510 * 120.00493 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00004 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.47028 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47159 * 120.00222 * 17 15 13 20 20 H 1.48497 * 109.47679 * 240.00504 * 17 15 13 21 21 H 1.09000 * 109.47154 * 186.11313 * 1 2 3 22 22 H 1.08994 * 109.47338 * 306.12283 * 1 2 3 23 23 H 1.09001 * 109.46892 * 66.11975 * 1 2 3 24 24 H 1.00910 * 111.00416 * 177.63056 * 4 2 1 25 25 H 1.09001 * 109.45704 * 58.27632 * 5 4 2 26 26 H 1.08998 * 109.46574 * 178.25074 * 5 4 2 27 27 H 1.09003 * 109.49762 * 179.11748 * 6 5 4 28 28 H 1.08999 * 109.49916 * 299.22977 * 6 5 4 29 29 H 1.09007 * 109.52341 * 62.24958 * 7 6 5 30 30 H 1.09000 * 109.52435 * 182.44229 * 7 6 5 31 31 H 1.08997 * 109.47453 * 54.14481 * 11 10 8 32 32 H 1.08999 * 109.47056 * 174.15141 * 11 10 8 33 33 H 1.09000 * 109.46651 * 294.14722 * 11 10 8 34 34 H 1.09004 * 109.47421 * 290.01004 * 12 10 8 35 35 H 1.09007 * 109.46842 * 50.00416 * 12 10 8 36 36 H 0.96998 * 120.00335 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 7 2.0193 -0.6917 -1.1993 5 6 1.5175 -2.0705 -1.2591 6 6 2.0269 -2.8531 -0.0467 7 6 1.5442 -2.1696 1.2356 8 6 2.0399 -0.7209 1.2500 9 1 3.1298 -0.7092 1.2578 10 7 1.5328 -0.0409 2.4494 11 6 1.7917 -0.8384 3.6557 12 6 2.1082 1.3048 2.5746 13 6 1.3901 2.0589 3.6638 14 1 0.5868 1.5857 4.2089 15 6 1.7592 3.3527 3.9652 16 7 2.7377 3.9289 3.3018 17 14 0.8685 4.2879 5.3149 18 1 -0.1855 3.4230 5.9037 19 1 1.8377 4.6751 6.3713 20 1 0.2454 5.5086 4.7433 21 1 -0.3633 -1.0218 0.1094 22 1 -0.3634 0.6058 0.8300 23 1 -0.3633 0.4160 -0.9397 24 1 3.0273 -0.6716 -1.2425 25 1 0.4275 -2.0607 -1.2533 26 1 1.8715 -2.5465 -2.1734 27 1 1.6414 -3.8721 -0.0832 28 1 3.1166 -2.8750 -0.0594 29 1 0.4547 -2.1822 1.2672 30 1 1.9408 -2.6989 2.1020 31 1 2.8534 -1.0782 3.7117 32 1 1.5009 -0.2679 4.5377 33 1 1.2126 -1.7609 3.6125 34 1 3.1664 1.2258 2.8242 35 1 1.9966 1.8370 1.6298 36 1 2.9972 4.8392 3.5136 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306827557.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:09 Heat of formation + Delta-G solvation = -21.517469 kcal Electronic energy + Delta-G solvation = -15126.333114 eV Core-core repulsion = 12837.087121 eV Total energy + Delta-G solvation = -2289.245993 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.77962 -37.26882 -34.66511 -33.04360 -31.51060 -29.29658 -28.09281 -26.73271 -24.13342 -23.17307 -21.96310 -19.82312 -18.57605 -17.41781 -16.73811 -16.59297 -15.82698 -15.65913 -15.27743 -14.60619 -14.22895 -13.95649 -13.68322 -13.29112 -13.11623 -12.92720 -12.85227 -12.59052 -12.50212 -12.40133 -12.23379 -12.03894 -11.77574 -11.50088 -11.19080 -11.02174 -10.59960 -9.28017 -8.99529 -8.20772 -6.30558 1.39942 1.40812 1.54266 2.39602 3.11437 3.16637 3.49883 3.78919 3.95914 4.08950 4.26188 4.30295 4.49709 4.56980 4.61833 4.66164 4.70810 4.87031 4.99936 5.01687 5.06444 5.09714 5.17211 5.19273 5.27829 5.32346 5.39627 5.53806 5.65509 6.04516 6.13673 6.33140 6.49460 6.66532 6.86243 7.39054 8.90582 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049335 B = 0.008032 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.416474 B = 3485.386021 C = 3695.552025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.095 3.905 3 H 0.048 0.952 4 N -0.682 5.682 5 C 0.053 3.947 6 C -0.147 4.147 7 C -0.110 4.110 8 C 0.056 3.944 9 H 0.007 0.993 10 N -0.532 5.532 11 C 0.038 3.962 12 C 0.209 3.791 13 C -0.521 4.521 14 H 0.064 0.936 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.262 1.262 19 H -0.279 1.279 20 H -0.278 1.278 21 H 0.067 0.933 22 H 0.047 0.953 23 H 0.054 0.946 24 H 0.340 0.660 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.005 0.995 32 H 0.056 0.944 33 H 0.081 0.919 34 H -0.050 1.050 35 H 0.011 0.989 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.688 -12.841 -5.991 14.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.015 4.015 3 H 0.066 0.934 4 N -0.311 5.311 5 C -0.076 4.076 6 C -0.186 4.186 7 C -0.148 4.148 8 C -0.055 4.055 9 H 0.024 0.976 10 N -0.257 5.257 11 C -0.110 4.110 12 C 0.083 3.917 13 C -0.559 4.559 14 H 0.082 0.918 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.794 3.206 18 H -0.186 1.186 19 H -0.205 1.205 20 H -0.204 1.204 21 H 0.086 0.914 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.157 0.843 25 H 0.096 0.904 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.023 0.977 32 H 0.075 0.925 33 H 0.100 0.900 34 H -0.032 1.032 35 H 0.029 0.971 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.611 -12.380 -6.481 14.433 hybrid contribution 1.592 0.550 1.587 2.314 sum -2.020 -11.830 -4.894 12.961 Atomic orbital electron populations 1.21603 0.93292 1.02092 1.00828 1.21364 0.97098 0.96140 0.86903 0.93405 1.60802 1.15224 1.17018 1.38058 1.22170 1.01118 0.86763 0.97594 1.22232 1.00844 1.00701 0.94870 1.21709 1.01777 0.92632 0.98658 1.22383 0.94912 0.95842 0.92332 0.97553 1.62114 1.58579 1.02868 1.02100 1.22259 0.97508 0.97775 0.93485 1.19386 0.90544 0.85800 0.96019 1.21498 1.17734 0.98398 1.18280 0.91826 1.25924 0.95982 0.98622 0.99238 1.70097 1.30209 1.14354 1.42907 0.85337 0.78486 0.78317 0.78490 1.18645 1.20499 1.20393 0.91374 0.93420 0.92657 0.84294 0.90402 0.88914 0.89082 0.92376 0.90672 0.91895 0.97660 0.92513 0.90044 1.03201 0.97148 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 8.28 71.98 0.60 -3.43 16 2 C 0.10 3.37 3.02 44.94 0.14 3.51 16 3 H 0.05 2.06 6.42 -2.39 -0.02 2.04 16 4 N -0.68 -19.24 6.67 -491.68 -3.28 -22.51 16 5 C 0.05 1.14 6.26 86.33 0.54 1.68 16 6 C -0.15 -3.11 6.08 30.64 0.19 -2.92 16 7 C -0.11 -3.03 4.30 30.67 0.13 -2.90 16 8 C 0.06 2.03 1.79 44.97 0.08 2.11 16 9 H 0.01 0.26 8.12 -2.39 -0.02 0.24 16 10 N -0.53 -23.21 3.94 -901.28 -3.55 -26.76 16 11 C 0.04 1.49 8.59 127.69 1.10 2.59 16 12 C 0.21 11.37 4.59 85.56 0.39 11.76 16 13 C -0.52 -29.94 8.37 25.60 0.21 -29.72 16 14 H 0.06 3.58 7.18 -2.91 -0.02 3.56 16 15 C 0.00 0.01 5.46 84.66 0.46 0.47 16 16 N -0.94 -57.21 13.29 21.45 0.28 -56.92 16 17 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 18 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H 0.07 1.97 4.84 -2.39 -0.01 1.96 16 22 H 0.05 1.86 7.78 -2.39 -0.02 1.84 16 23 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.34 9.13 8.86 -89.69 -0.79 8.33 16 25 H 0.08 1.70 6.33 -2.39 -0.02 1.68 16 26 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 2.07 6.42 -2.38 -0.02 2.05 16 30 H 0.06 1.69 6.61 -2.39 -0.02 1.67 16 31 H 0.00 0.19 8.12 -2.39 -0.02 0.17 16 32 H 0.06 2.42 6.65 -2.39 -0.02 2.40 16 33 H 0.08 2.62 6.64 -2.39 -0.02 2.60 16 34 H -0.05 -3.00 8.12 -2.38 -0.02 -3.02 16 35 H 0.01 0.62 6.12 -2.38 -0.01 0.60 16 36 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -63.91 270.57 -0.42 -64.33 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.26 Total: 11.86 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 3.84 Total: -16.85 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -6.54 Total: -106.20 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -63.91 -0.42 -64.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306827557.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.808 kcal (2) G-P(sol) polarization free energy of solvation -63.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds