Wall clock time and date at job start Mon Mar 30 2020 02:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46192 * 2 1 4 4 N 1.46840 * 109.46415 * 240.02063 * 2 1 3 5 5 C 1.46853 * 111.19786 * 178.25061 * 4 2 1 6 6 C 1.53041 * 109.52307 * 61.74571 * 5 4 2 7 7 C 1.53120 * 109.27687 * 300.82030 * 6 5 4 8 8 C 1.53043 * 109.45309 * 119.97259 * 2 1 3 9 9 H 1.08996 * 109.50277 * 59.24946 * 8 2 1 10 10 N 1.46904 * 109.50392 * 299.13194 * 8 2 1 11 11 C 1.46892 * 110.99916 * 170.06069 * 10 8 2 12 12 C 1.46907 * 110.99871 * 294.01084 * 10 8 2 13 13 C 1.50700 * 109.46724 * 169.99907 * 12 10 8 14 14 H 1.08001 * 120.00112 * 0.02562 * 13 12 10 15 15 C 1.37876 * 119.99702 * 180.02562 * 13 12 10 16 16 N 1.31513 * 119.99970 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99995 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47068 * 89.99983 * 17 15 13 19 19 H 1.48495 * 109.47109 * 210.00375 * 17 15 13 20 20 H 1.48497 * 109.46841 * 330.00094 * 17 15 13 21 21 H 1.09007 * 109.47078 * 175.46054 * 1 2 3 22 22 H 1.09004 * 109.47211 * 295.45517 * 1 2 3 23 23 H 1.08994 * 109.47354 * 55.45895 * 1 2 3 24 24 H 1.00898 * 110.99912 * 54.15651 * 4 2 1 25 25 H 1.09005 * 109.45811 * 181.75641 * 5 4 2 26 26 H 1.08997 * 109.46182 * 301.73651 * 5 4 2 27 27 H 1.09000 * 109.50256 * 60.75685 * 6 5 4 28 28 H 1.09000 * 109.50014 * 180.84022 * 6 5 4 29 29 H 1.08999 * 109.52450 * 177.56310 * 7 6 5 30 30 H 1.09003 * 109.51867 * 297.69030 * 7 6 5 31 31 H 1.09006 * 109.47687 * 65.77577 * 11 10 8 32 32 H 1.09003 * 109.47255 * 185.77887 * 11 10 8 33 33 H 1.09004 * 109.47563 * 305.77462 * 11 10 8 34 34 H 1.09000 * 109.47243 * 290.00150 * 12 10 8 35 35 H 1.09000 * 109.46708 * 50.00468 * 12 10 8 36 36 H 0.97007 * 120.00218 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 7 2.0193 -0.6918 -1.1992 5 6 3.4865 -0.6779 -1.2588 6 6 4.0546 -1.4191 -0.0464 7 6 3.5707 -0.7363 1.2359 8 6 2.0397 -0.7209 1.2501 9 1 1.6655 -1.7446 1.2577 10 7 1.5674 -0.0163 2.4495 11 6 1.8342 -0.8026 3.6612 12 6 2.1693 1.3203 2.5460 13 6 1.4851 2.1015 3.6382 14 1 0.6837 1.6500 4.2042 15 6 1.8823 3.3925 3.9148 16 7 2.8579 3.9423 3.2252 17 14 1.0339 4.3611 5.2681 18 1 1.7375 4.1331 6.5557 19 1 1.0660 5.8081 4.9358 20 1 -0.3765 3.9121 5.3884 21 1 -0.3633 -1.0245 -0.0813 22 1 -0.3634 0.4417 0.9279 23 1 -0.3634 0.5826 -0.8465 24 1 1.6197 -0.2926 -2.0353 25 1 3.8175 -1.1703 -2.1733 26 1 3.8405 0.3530 -1.2527 27 1 3.7122 -2.4538 -0.0591 28 1 5.1438 -1.3957 -0.0831 29 1 3.9376 -1.2865 2.1023 30 1 3.9465 0.2864 1.2680 31 1 2.9108 -0.8853 3.8110 32 1 1.3845 -0.3076 4.5219 33 1 1.4054 -1.7985 3.5500 34 1 3.2302 1.2252 2.7772 35 1 2.0496 1.8421 1.5965 36 1 3.1371 4.8508 3.4195 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306827558.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:12 Heat of formation + Delta-G solvation = -2.961484 kcal Electronic energy + Delta-G solvation = -15164.666908 eV Core-core repulsion = 12876.225563 eV Total energy + Delta-G solvation = -2288.441345 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.08555 -35.50605 -32.53762 -32.31047 -30.01249 -27.31628 -26.33162 -24.64530 -22.93968 -21.33522 -20.71457 -18.45818 -16.49289 -15.84728 -14.91105 -14.54158 -14.19737 -13.86461 -13.65892 -13.51668 -12.84674 -12.54888 -12.00612 -11.90416 -11.66492 -11.33266 -11.14481 -10.91199 -10.80127 -10.71497 -10.44224 -10.27934 -10.09472 -9.90507 -9.66249 -9.15597 -8.42683 -8.08550 -7.10358 -6.01350 -4.01966 3.31918 3.38198 3.42635 4.38222 4.47616 5.08056 5.18025 5.30409 5.32718 5.38349 5.57962 5.77430 5.88509 5.95860 6.04154 6.10629 6.19663 6.27816 6.29164 6.31772 6.40216 6.51767 6.63826 6.78145 6.79130 6.95229 7.28262 7.39334 7.45592 7.68209 7.83501 8.13793 8.25901 8.60789 9.06157 9.62018 11.09413 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038864 B = 0.008572 C = 0.008554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.283175 B = 3265.782894 C = 3272.521054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.091 3.909 3 H 0.046 0.954 4 N -0.689 5.689 5 C 0.058 3.942 6 C -0.111 4.111 7 C -0.157 4.157 8 C 0.097 3.903 9 H 0.072 0.928 10 N -0.534 5.534 11 C 0.040 3.960 12 C 0.190 3.810 13 C -0.506 4.506 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.900 5.900 17 Si 0.896 3.104 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 H 0.051 0.949 22 H 0.082 0.918 23 H 0.038 0.962 24 H 0.337 0.663 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.013 0.987 32 H 0.071 0.929 33 H 0.043 0.957 34 H -0.007 1.007 35 H 0.031 0.969 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.080 -8.592 -6.474 10.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.018 4.018 3 H 0.064 0.936 4 N -0.321 5.321 5 C -0.071 4.071 6 C -0.149 4.149 7 C -0.197 4.197 8 C -0.013 4.013 9 H 0.090 0.910 10 N -0.257 5.257 11 C -0.109 4.109 12 C 0.065 3.935 13 C -0.544 4.544 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.540 5.540 17 Si 0.724 3.276 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 H 0.071 0.929 22 H 0.101 0.899 23 H 0.058 0.942 24 H 0.155 0.845 25 H 0.085 0.915 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.031 0.969 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.010 0.990 35 H 0.049 0.951 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.378 -8.971 -6.224 10.925 hybrid contribution 0.830 1.519 0.546 1.815 sum 0.453 -7.453 -5.678 9.380 Atomic orbital electron populations 1.21690 0.93966 1.01185 1.02313 1.21471 0.95753 0.95525 0.89082 0.93594 1.60341 1.06726 1.59939 1.05055 1.21876 0.88382 0.98583 0.98281 1.21506 0.99077 0.99746 0.94581 1.22320 0.98764 1.01532 0.97038 1.21591 0.91330 0.97415 0.90918 0.91021 1.62260 1.58721 1.04409 1.00307 1.22169 0.97968 0.96313 0.94431 1.19783 0.92698 0.83492 0.97519 1.21208 1.18088 0.97856 1.17277 0.91936 1.24984 0.95268 0.97695 0.96711 1.69959 1.28513 1.14718 1.40773 0.86531 0.80025 0.79087 0.81982 1.20807 1.21319 1.19773 0.92942 0.89904 0.94249 0.84511 0.91456 0.95355 0.91738 0.92312 0.92347 0.91158 0.96881 0.91003 0.93835 0.98960 0.95131 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.35 37.16 0.35 -1.89 16 2 C 0.09 1.61 2.39 -67.73 -0.16 1.45 16 3 H 0.05 0.95 6.33 -51.93 -0.33 0.62 16 4 N -0.69 -10.26 6.50 -106.76 -0.69 -10.95 16 5 C 0.06 0.82 6.55 -3.83 -0.03 0.80 16 6 C -0.11 -1.61 6.09 -26.65 -0.16 -1.78 16 7 C -0.16 -2.80 4.56 -26.61 -0.12 -2.92 16 8 C 0.10 1.81 1.79 -67.62 -0.12 1.69 16 9 H 0.07 1.31 7.99 -51.93 -0.41 0.89 16 10 N -0.53 -11.51 3.90 -236.22 -0.92 -12.43 16 11 C 0.04 0.79 9.02 60.06 0.54 1.33 16 12 C 0.19 4.90 3.67 -4.97 -0.02 4.89 16 13 C -0.51 -14.18 8.54 -34.44 -0.29 -14.48 16 14 H 0.06 1.74 7.10 -52.49 -0.37 1.37 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 17 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 22 H 0.08 1.58 7.49 -51.93 -0.39 1.19 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.34 4.41 8.79 -39.29 -0.35 4.06 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.03 6.94 -51.93 -0.36 0.67 16 30 H 0.07 1.45 6.43 -51.93 -0.33 1.11 16 31 H 0.01 0.25 6.92 -51.93 -0.36 -0.11 16 32 H 0.07 1.50 6.91 -51.93 -0.36 1.14 16 33 H 0.04 0.74 8.02 -51.93 -0.42 0.32 16 34 H -0.01 -0.20 6.76 -51.93 -0.35 -0.56 16 35 H 0.03 0.85 6.07 -51.93 -0.32 0.53 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 274.86 15.07 4.14 4.14 Total: -1.00 -29.11 274.86 -7.89 -37.00 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.02 Total: 1.04 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -0.11 Total: -9.46 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.88 Total: -49.42 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.11 -7.89 -37.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306827558.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.036 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds