Wall clock time and date at job start Mon Mar 30 2020 02:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46192 * 2 1 4 4 N 1.46840 * 109.46415 * 240.02063 * 2 1 3 5 5 C 1.46853 * 111.19786 * 178.25061 * 4 2 1 6 6 C 1.53041 * 109.52307 * 61.74571 * 5 4 2 7 7 C 1.53120 * 109.27687 * 300.82030 * 6 5 4 8 8 C 1.53043 * 109.45309 * 119.97259 * 2 1 3 9 9 H 1.08996 * 109.50277 * 59.24946 * 8 2 1 10 10 N 1.46904 * 109.50392 * 299.13194 * 8 2 1 11 11 C 1.46892 * 110.99916 * 170.06069 * 10 8 2 12 12 C 1.46907 * 110.99871 * 294.01084 * 10 8 2 13 13 C 1.50700 * 109.46724 * 169.99907 * 12 10 8 14 14 H 1.08001 * 120.00112 * 0.02562 * 13 12 10 15 15 C 1.37876 * 119.99702 * 180.02562 * 13 12 10 16 16 N 1.31513 * 119.99970 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99995 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47068 * 89.99983 * 17 15 13 19 19 H 1.48495 * 109.47109 * 210.00375 * 17 15 13 20 20 H 1.48497 * 109.46841 * 330.00094 * 17 15 13 21 21 H 1.09007 * 109.47078 * 175.46054 * 1 2 3 22 22 H 1.09004 * 109.47211 * 295.45517 * 1 2 3 23 23 H 1.08994 * 109.47354 * 55.45895 * 1 2 3 24 24 H 1.00898 * 110.99912 * 54.15651 * 4 2 1 25 25 H 1.09005 * 109.45811 * 181.75641 * 5 4 2 26 26 H 1.08997 * 109.46182 * 301.73651 * 5 4 2 27 27 H 1.09000 * 109.50256 * 60.75685 * 6 5 4 28 28 H 1.09000 * 109.50014 * 180.84022 * 6 5 4 29 29 H 1.08999 * 109.52450 * 177.56310 * 7 6 5 30 30 H 1.09003 * 109.51867 * 297.69030 * 7 6 5 31 31 H 1.09006 * 109.47687 * 65.77577 * 11 10 8 32 32 H 1.09003 * 109.47255 * 185.77887 * 11 10 8 33 33 H 1.09004 * 109.47563 * 305.77462 * 11 10 8 34 34 H 1.09000 * 109.47243 * 290.00150 * 12 10 8 35 35 H 1.09000 * 109.46708 * 50.00468 * 12 10 8 36 36 H 0.97007 * 120.00218 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 7 2.0193 -0.6918 -1.1992 5 6 3.4865 -0.6779 -1.2588 6 6 4.0546 -1.4191 -0.0464 7 6 3.5707 -0.7363 1.2359 8 6 2.0397 -0.7209 1.2501 9 1 1.6655 -1.7446 1.2577 10 7 1.5674 -0.0163 2.4495 11 6 1.8342 -0.8026 3.6612 12 6 2.1693 1.3203 2.5460 13 6 1.4851 2.1015 3.6382 14 1 0.6837 1.6500 4.2042 15 6 1.8823 3.3925 3.9148 16 7 2.8579 3.9423 3.2252 17 14 1.0339 4.3611 5.2681 18 1 1.7375 4.1331 6.5557 19 1 1.0660 5.8081 4.9358 20 1 -0.3765 3.9121 5.3884 21 1 -0.3633 -1.0245 -0.0813 22 1 -0.3634 0.4417 0.9279 23 1 -0.3634 0.5826 -0.8465 24 1 1.6197 -0.2926 -2.0353 25 1 3.8175 -1.1703 -2.1733 26 1 3.8405 0.3530 -1.2527 27 1 3.7122 -2.4538 -0.0591 28 1 5.1438 -1.3957 -0.0831 29 1 3.9376 -1.2865 2.1023 30 1 3.9465 0.2864 1.2680 31 1 2.9108 -0.8853 3.8110 32 1 1.3845 -0.3076 4.5219 33 1 1.4054 -1.7985 3.5500 34 1 3.2302 1.2252 2.7772 35 1 2.0496 1.8421 1.5965 36 1 3.1371 4.8508 3.4195 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306827558.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:11 Heat of formation + Delta-G solvation = -23.700910 kcal Electronic energy + Delta-G solvation = -15165.566237 eV Core-core repulsion = 12876.225563 eV Total energy + Delta-G solvation = -2289.340674 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.56462 -37.09831 -34.64721 -33.64386 -31.49911 -29.32590 -27.73025 -26.33161 -24.71426 -22.83325 -22.11977 -20.05689 -18.52779 -17.33414 -16.68900 -16.18752 -15.59296 -15.45126 -15.31353 -14.99344 -14.40787 -14.11676 -13.99033 -13.28056 -13.06407 -13.00946 -12.74847 -12.65438 -12.53154 -12.32593 -12.22837 -11.76368 -11.58026 -11.50185 -11.37487 -11.10047 -10.59970 -9.41729 -8.87441 -8.20126 -6.29656 1.39410 1.40660 1.52373 2.39586 3.08475 3.12633 3.55417 3.82872 3.93954 4.05850 4.24001 4.40216 4.49388 4.55812 4.63954 4.72292 4.74750 4.90699 4.92563 4.97843 5.00504 5.11781 5.16374 5.19195 5.24549 5.32475 5.45820 5.54623 5.66241 6.03123 6.10860 6.36017 6.54644 6.70098 6.87997 7.39898 8.90581 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038864 B = 0.008572 C = 0.008554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.283175 B = 3265.782894 C = 3272.521054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.096 3.904 3 H 0.006 0.994 4 N -0.677 5.677 5 C 0.056 3.944 6 C -0.105 4.105 7 C -0.153 4.153 8 C 0.096 3.904 9 H 0.088 0.912 10 N -0.539 5.539 11 C 0.042 3.958 12 C 0.214 3.786 13 C -0.523 4.523 14 H 0.062 0.938 15 C 0.000 4.000 16 N -0.936 5.936 17 Si 0.967 3.033 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.264 1.264 21 H 0.069 0.931 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.351 0.649 25 H 0.102 0.898 26 H 0.010 0.990 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.031 0.969 31 H 0.009 0.991 32 H 0.057 0.943 33 H 0.077 0.923 34 H -0.039 1.039 35 H 0.003 0.997 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.609 -9.973 -6.832 12.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.014 4.014 3 H 0.024 0.976 4 N -0.310 5.310 5 C -0.073 4.073 6 C -0.143 4.143 7 C -0.192 4.192 8 C -0.013 4.013 9 H 0.106 0.894 10 N -0.262 5.262 11 C -0.107 4.107 12 C 0.088 3.912 13 C -0.561 4.561 14 H 0.081 0.919 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.792 3.208 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.188 1.188 21 H 0.088 0.912 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.169 0.831 25 H 0.120 0.880 26 H 0.029 0.971 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.027 0.973 32 H 0.076 0.924 33 H 0.096 0.904 34 H -0.021 1.021 35 H 0.021 0.979 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.072 -10.375 -6.596 12.341 hybrid contribution 1.070 1.900 0.612 2.265 sum -0.002 -8.475 -5.984 10.375 Atomic orbital electron populations 1.21588 0.93058 1.02210 1.01523 1.21313 0.96463 0.93490 0.90173 0.97642 1.60346 1.07338 1.58863 1.04471 1.21987 0.87734 0.97989 0.99625 1.21500 1.00181 0.99987 0.92616 1.22237 0.98139 0.99648 0.99225 1.21691 0.91949 0.97679 0.89994 0.89365 1.62173 1.58532 1.03300 1.02231 1.22180 0.97884 0.97447 0.93143 1.19321 0.90820 0.85631 0.95420 1.21546 1.18195 0.98542 1.17848 0.91949 1.25904 0.95862 0.98811 0.99157 1.70096 1.29936 1.15162 1.42441 0.85417 0.79168 0.77400 0.78857 1.19882 1.20837 1.18834 0.91238 0.92748 0.92659 0.83054 0.88022 0.97132 0.90141 0.90661 0.92386 0.95036 0.97260 0.92443 0.90402 1.02123 0.97898 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.35 71.98 0.67 -3.43 16 2 C 0.10 3.38 2.39 44.94 0.11 3.48 16 3 H 0.01 0.25 6.33 -2.39 -0.02 0.23 16 4 N -0.68 -18.88 6.50 -491.66 -3.20 -22.08 16 5 C 0.06 1.47 6.55 86.33 0.57 2.04 16 6 C -0.10 -2.84 6.09 30.65 0.19 -2.66 16 7 C -0.15 -5.48 4.56 30.68 0.14 -5.34 16 8 C 0.10 3.55 1.79 44.97 0.08 3.63 16 9 H 0.09 3.01 7.99 -2.39 -0.02 2.99 16 10 N -0.54 -23.60 3.90 -901.27 -3.51 -27.12 16 11 C 0.04 1.64 9.02 127.69 1.15 2.79 16 12 C 0.21 11.57 3.67 85.56 0.31 11.88 16 13 C -0.52 -30.09 8.54 25.60 0.22 -29.87 16 14 H 0.06 3.52 7.10 -2.91 -0.02 3.49 16 15 C 0.00 0.02 5.46 84.65 0.46 0.48 16 16 N -0.94 -57.25 13.29 21.45 0.28 -56.96 16 17 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 20 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 21 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 22 H 0.05 2.08 7.49 -2.38 -0.02 2.06 16 23 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.35 8.37 8.79 -89.70 -0.79 7.58 16 25 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 2.03 6.94 -2.39 -0.02 2.02 16 30 H 0.03 1.35 6.43 -2.39 -0.02 1.34 16 31 H 0.01 0.35 6.92 -2.38 -0.02 0.34 16 32 H 0.06 2.39 6.91 -2.39 -0.02 2.37 16 33 H 0.08 2.50 8.02 -2.38 -0.02 2.48 16 34 H -0.04 -2.30 6.76 -2.39 -0.02 -2.32 16 35 H 0.00 0.18 6.07 -2.39 -0.01 0.16 16 36 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -64.02 274.86 -0.24 -64.27 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.26 Total: 11.95 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 3.90 Total: -17.01 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -6.43 Total: -106.16 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -64.02 -0.24 -64.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306827558.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.565 kcal (2) G-P(sol) polarization free energy of solvation -64.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds