Wall clock time and date at job start Mon Mar 30 2020 02:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46350 * 2 1 4 4 N 1.46849 * 109.45933 * 119.97854 * 2 1 3 5 5 C 1.46842 * 111.20050 * 181.76016 * 4 2 1 6 6 C 1.53039 * 109.52266 * 298.25785 * 5 4 2 7 7 C 1.53123 * 109.31189 * 59.15550 * 6 5 4 8 8 C 1.53036 * 109.46167 * 240.02851 * 2 1 3 9 9 H 1.09005 * 109.50658 * 300.78276 * 8 2 1 10 10 N 1.46895 * 109.50400 * 60.86909 * 8 2 1 11 11 C 1.46893 * 111.00399 * 66.04209 * 10 8 2 12 12 C 1.46903 * 111.00074 * 189.99867 * 10 8 2 13 13 C 1.50697 * 109.47207 * 169.99603 * 12 10 8 14 14 H 1.07998 * 119.99919 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99565 * 179.97438 * 13 12 10 16 16 N 1.31521 * 119.99463 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00336 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.46937 * 90.00245 * 17 15 13 19 19 H 1.48500 * 109.47099 * 210.00172 * 17 15 13 20 20 H 1.48499 * 109.47145 * 330.00199 * 17 15 13 21 21 H 1.08993 * 109.46913 * 300.02347 * 1 2 3 22 22 H 1.09000 * 109.46466 * 60.02689 * 1 2 3 23 23 H 1.08996 * 109.47097 * 180.02562 * 1 2 3 24 24 H 1.00903 * 110.99692 * 305.85594 * 4 2 1 25 25 H 1.08995 * 109.46659 * 178.23678 * 5 4 2 26 26 H 1.09009 * 109.46400 * 58.26507 * 5 4 2 27 27 H 1.09002 * 109.50563 * 179.11883 * 6 5 4 28 28 H 1.09003 * 109.50107 * 299.19864 * 6 5 4 29 29 H 1.09000 * 109.52057 * 62.27355 * 7 6 5 30 30 H 1.08995 * 109.52240 * 182.46183 * 7 6 5 31 31 H 1.09002 * 109.46862 * 59.99759 * 11 10 8 32 32 H 1.08994 * 109.47538 * 179.97438 * 11 10 8 33 33 H 1.08998 * 109.47106 * 300.00486 * 11 10 8 34 34 H 1.09005 * 109.46675 * 289.99942 * 12 10 8 35 35 H 1.09006 * 109.47026 * 49.99336 * 12 10 8 36 36 H 0.97006 * 119.99745 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0193 -0.6919 1.1994 5 6 3.4864 -0.6778 1.2592 6 6 4.0548 -1.4188 0.0468 7 6 3.5711 -0.7369 -1.2360 8 6 2.0399 -0.7208 -1.2500 9 1 1.6654 -1.7445 -1.2581 10 7 1.5678 -0.0163 -2.4493 11 6 2.1705 1.3198 -2.5466 12 6 1.8336 -0.8032 -3.6610 13 6 1.1254 -0.1748 -4.8335 14 1 0.5370 0.7198 -4.6927 15 6 1.2295 -0.7416 -6.0861 16 7 0.6118 -0.1929 -7.1094 17 14 2.2477 -2.2886 -6.3297 18 1 1.3878 -3.4832 -6.1331 19 1 2.8065 -2.3019 -7.7055 20 1 3.3583 -2.3105 -5.3441 21 1 -0.3633 0.5142 0.8897 22 1 -0.3632 0.5134 -0.8903 23 1 -0.3633 -1.0276 0.0005 24 1 1.6194 -0.2927 2.0354 25 1 3.8174 -1.1700 2.1737 26 1 3.8403 0.3532 1.2533 27 1 5.1440 -1.3948 0.0833 28 1 3.7130 -2.4538 0.0598 29 1 3.9459 0.2861 -1.2682 30 1 3.9381 -1.2877 -2.1020 31 1 3.2551 1.2260 -2.6005 32 1 1.8043 1.8192 -3.4435 33 1 1.8998 1.9053 -1.6680 34 1 2.9065 -0.8235 -3.8529 35 1 1.4704 -1.8212 -3.5201 36 1 0.6847 -0.5918 -7.9906 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306827559.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:14 Heat of formation + Delta-G solvation = 2.157776 kcal Electronic energy + Delta-G solvation = -15080.720475 eV Core-core repulsion = 12792.501118 eV Total energy + Delta-G solvation = -2288.219357 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.29977 -35.71159 -32.55345 -32.47176 -30.24402 -27.72496 -26.60880 -24.94846 -22.99700 -21.29111 -20.42364 -18.77919 -16.93853 -16.06129 -15.16436 -14.49032 -14.30280 -14.18272 -13.88869 -13.36712 -13.16145 -12.81970 -12.29672 -12.03082 -11.85827 -11.51687 -11.30094 -10.98794 -10.83617 -10.78068 -10.50701 -10.36393 -10.26664 -9.97992 -9.74991 -9.26014 -8.54541 -8.32233 -7.25470 -6.03380 -4.00134 3.29963 3.37123 3.39361 4.20922 4.43824 4.86995 4.99719 5.10728 5.14477 5.28811 5.40284 5.53971 5.63098 5.74680 5.78124 5.92356 6.04491 6.09775 6.16574 6.23010 6.24797 6.31990 6.42837 6.60695 6.71956 6.76613 6.92676 7.04773 7.17550 7.48733 7.63013 7.95384 8.10533 8.68879 9.05336 9.58821 11.09783 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041181 B = 0.008841 C = 0.007994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.768001 B = 3166.200740 C = 3501.710208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.094 3.906 3 H 0.035 0.965 4 N -0.688 5.688 5 C 0.060 3.940 6 C -0.113 4.113 7 C -0.158 4.158 8 C 0.091 3.909 9 H 0.081 0.919 10 N -0.521 5.521 11 C 0.030 3.970 12 C 0.163 3.837 13 C -0.507 4.507 14 H 0.081 0.919 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.874 3.126 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.268 1.268 21 H 0.039 0.961 22 H 0.079 0.921 23 H 0.058 0.942 24 H 0.339 0.661 25 H 0.069 0.931 26 H 0.025 0.975 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.015 0.985 32 H 0.078 0.922 33 H 0.046 0.954 34 H -0.011 1.011 35 H 0.023 0.977 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.350 -0.477 15.194 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.015 4.015 3 H 0.053 0.947 4 N -0.320 5.320 5 C -0.069 4.069 6 C -0.151 4.151 7 C -0.197 4.197 8 C -0.018 4.018 9 H 0.099 0.901 10 N -0.244 5.244 11 C -0.118 4.118 12 C 0.037 3.963 13 C -0.546 4.546 14 H 0.099 0.901 15 C -0.134 4.134 16 N -0.541 5.541 17 Si 0.701 3.299 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.193 1.193 21 H 0.058 0.942 22 H 0.098 0.902 23 H 0.077 0.923 24 H 0.156 0.844 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.034 0.966 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.007 0.993 35 H 0.041 0.959 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.765 -1.053 14.724 15.512 hybrid contribution 1.659 -0.037 -0.135 1.665 sum 6.423 -1.090 14.589 15.978 Atomic orbital electron populations 1.21700 0.93652 1.02396 1.01528 1.21452 0.95936 0.94631 0.89491 0.94707 1.60271 1.06757 1.60034 1.04912 1.21873 0.88236 0.98241 0.98544 1.21528 0.99140 1.00226 0.94252 1.22332 0.98827 1.00851 0.97735 1.21716 0.91267 0.98475 0.90389 0.90055 1.62086 1.57186 1.02856 1.02249 1.22324 0.96150 0.91637 1.01695 1.20165 0.94541 0.93598 0.88012 1.21052 1.30259 1.12882 0.90370 0.90140 1.24896 0.95452 0.97055 0.95959 1.69900 1.43556 1.40496 1.00117 0.86878 0.81204 0.84323 0.77466 1.20130 1.21266 1.19321 0.94204 0.90225 0.92295 0.84372 0.91260 0.95710 0.92186 0.91333 0.91959 0.91676 0.96627 0.90282 0.93514 0.99317 0.95945 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.29 37.16 0.35 -1.64 16 2 C 0.09 1.41 2.37 -67.72 -0.16 1.25 16 3 H 0.04 0.53 6.51 -51.93 -0.34 0.20 16 4 N -0.69 -8.84 6.50 -106.76 -0.69 -9.53 16 5 C 0.06 0.72 6.55 -3.84 -0.03 0.69 16 6 C -0.11 -1.49 6.09 -26.65 -0.16 -1.65 16 7 C -0.16 -2.55 4.56 -26.60 -0.12 -2.68 16 8 C 0.09 1.61 1.79 -67.63 -0.12 1.49 16 9 H 0.08 1.54 7.93 -51.93 -0.41 1.13 16 10 N -0.52 -10.87 3.98 -236.23 -0.94 -11.81 16 11 C 0.03 0.58 8.60 60.06 0.52 1.10 16 12 C 0.16 3.99 3.37 -4.98 -0.02 3.97 16 13 C -0.51 -14.48 9.01 -34.44 -0.31 -14.79 16 14 H 0.08 2.49 7.37 -52.49 -0.39 2.10 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 17 Si 0.87 21.76 27.47 -169.99 -4.67 17.09 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 21 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.08 1.32 7.63 -51.93 -0.40 0.93 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.34 3.65 8.79 -39.29 -0.35 3.31 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.02 0.29 8.14 -51.92 -0.42 -0.13 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.00 6.19 -51.93 -0.32 0.68 16 30 H 0.06 1.15 7.04 -51.93 -0.37 0.79 16 31 H 0.02 0.29 6.16 -51.93 -0.32 -0.03 16 32 H 0.08 1.70 6.76 -51.93 -0.35 1.35 16 33 H 0.05 0.79 6.45 -51.93 -0.34 0.45 16 34 H -0.01 -0.27 6.18 -51.93 -0.32 -0.59 16 35 H 0.02 0.56 7.36 -51.93 -0.38 0.18 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 271.29 15.07 4.09 4.09 Total: -1.00 -29.88 271.29 -7.57 -37.45 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.98 Total: 0.08 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -0.15 Total: -10.37 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: -0.86 Total: -48.34 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.88 -7.57 -37.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306827559.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.610 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds