Wall clock time and date at job start Mon Mar 30 2020 02:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46350 * 2 1 4 4 N 1.46849 * 109.45933 * 119.97854 * 2 1 3 5 5 C 1.46842 * 111.20050 * 181.76016 * 4 2 1 6 6 C 1.53039 * 109.52266 * 298.25785 * 5 4 2 7 7 C 1.53123 * 109.31189 * 59.15550 * 6 5 4 8 8 C 1.53036 * 109.46167 * 240.02851 * 2 1 3 9 9 H 1.09005 * 109.50658 * 300.78276 * 8 2 1 10 10 N 1.46895 * 109.50400 * 60.86909 * 8 2 1 11 11 C 1.46893 * 111.00399 * 66.04209 * 10 8 2 12 12 C 1.46903 * 111.00074 * 189.99867 * 10 8 2 13 13 C 1.50697 * 109.47207 * 169.99603 * 12 10 8 14 14 H 1.07998 * 119.99919 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99565 * 179.97438 * 13 12 10 16 16 N 1.31521 * 119.99463 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00336 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.46937 * 90.00245 * 17 15 13 19 19 H 1.48500 * 109.47099 * 210.00172 * 17 15 13 20 20 H 1.48499 * 109.47145 * 330.00199 * 17 15 13 21 21 H 1.08993 * 109.46913 * 300.02347 * 1 2 3 22 22 H 1.09000 * 109.46466 * 60.02689 * 1 2 3 23 23 H 1.08996 * 109.47097 * 180.02562 * 1 2 3 24 24 H 1.00903 * 110.99692 * 305.85594 * 4 2 1 25 25 H 1.08995 * 109.46659 * 178.23678 * 5 4 2 26 26 H 1.09009 * 109.46400 * 58.26507 * 5 4 2 27 27 H 1.09002 * 109.50563 * 179.11883 * 6 5 4 28 28 H 1.09003 * 109.50107 * 299.19864 * 6 5 4 29 29 H 1.09000 * 109.52057 * 62.27355 * 7 6 5 30 30 H 1.08995 * 109.52240 * 182.46183 * 7 6 5 31 31 H 1.09002 * 109.46862 * 59.99759 * 11 10 8 32 32 H 1.08994 * 109.47538 * 179.97438 * 11 10 8 33 33 H 1.08998 * 109.47106 * 300.00486 * 11 10 8 34 34 H 1.09005 * 109.46675 * 289.99942 * 12 10 8 35 35 H 1.09006 * 109.47026 * 49.99336 * 12 10 8 36 36 H 0.97006 * 119.99745 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0193 -0.6919 1.1994 5 6 3.4864 -0.6778 1.2592 6 6 4.0548 -1.4188 0.0468 7 6 3.5711 -0.7369 -1.2360 8 6 2.0399 -0.7208 -1.2500 9 1 1.6654 -1.7445 -1.2581 10 7 1.5678 -0.0163 -2.4493 11 6 2.1705 1.3198 -2.5466 12 6 1.8336 -0.8032 -3.6610 13 6 1.1254 -0.1748 -4.8335 14 1 0.5370 0.7198 -4.6927 15 6 1.2295 -0.7416 -6.0861 16 7 0.6118 -0.1929 -7.1094 17 14 2.2477 -2.2886 -6.3297 18 1 1.3878 -3.4832 -6.1331 19 1 2.8065 -2.3019 -7.7055 20 1 3.3583 -2.3105 -5.3441 21 1 -0.3633 0.5142 0.8897 22 1 -0.3632 0.5134 -0.8903 23 1 -0.3633 -1.0276 0.0005 24 1 1.6194 -0.2927 2.0354 25 1 3.8174 -1.1700 2.1737 26 1 3.8403 0.3532 1.2533 27 1 5.1440 -1.3948 0.0833 28 1 3.7130 -2.4538 0.0598 29 1 3.9459 0.2861 -1.2682 30 1 3.9381 -1.2877 -2.1020 31 1 3.2551 1.2260 -2.6005 32 1 1.8043 1.8192 -3.4435 33 1 1.8998 1.9053 -1.6680 34 1 2.9065 -0.8235 -3.8529 35 1 1.4704 -1.8212 -3.5201 36 1 0.6847 -0.5918 -7.9906 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306827559.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:14 Heat of formation + Delta-G solvation = -19.997203 kcal Electronic energy + Delta-G solvation = -15081.681187 eV Core-core repulsion = 12792.501118 eV Total energy + Delta-G solvation = -2289.180069 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.61648 -37.18675 -34.63958 -33.65268 -31.69103 -29.59531 -27.89956 -26.49559 -24.51593 -22.53319 -22.00617 -20.11852 -19.03211 -17.37319 -16.69938 -16.10544 -15.70400 -15.65982 -15.14055 -14.87664 -14.73427 -14.36266 -14.10822 -13.31039 -13.19760 -12.95511 -12.71266 -12.68100 -12.48848 -12.31532 -11.97789 -11.84189 -11.69836 -11.53462 -11.45161 -11.15679 -10.78367 -9.35797 -8.89636 -8.29224 -6.31860 1.32943 1.33506 1.44291 2.32832 3.01821 3.05672 3.50451 3.80073 3.91219 4.04030 4.25416 4.32704 4.46974 4.52481 4.52835 4.66959 4.73394 4.83510 4.86040 4.94834 5.00822 5.02504 5.05267 5.13317 5.18965 5.30055 5.37848 5.53539 5.55433 5.96789 6.13160 6.37774 6.58922 6.68222 6.74586 7.31657 8.87305 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041181 B = 0.008841 C = 0.007994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.768001 B = 3166.200740 C = 3501.710208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.103 3.897 3 H 0.036 0.964 4 N -0.690 5.690 5 C 0.061 3.939 6 C -0.109 4.109 7 C -0.156 4.156 8 C 0.090 3.910 9 H 0.065 0.935 10 N -0.535 5.535 11 C 0.038 3.962 12 C 0.177 3.823 13 C -0.514 4.514 14 H 0.040 0.960 15 C 0.009 3.991 16 N -0.947 5.947 17 Si 0.944 3.056 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.254 1.254 21 H 0.066 0.934 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.354 0.646 25 H 0.095 0.905 26 H 0.031 0.969 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.023 0.977 32 H 0.047 0.953 33 H 0.074 0.926 34 H -0.013 1.013 35 H 0.020 0.980 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.845 -1.428 17.464 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.007 4.007 3 H 0.054 0.946 4 N -0.323 5.323 5 C -0.068 4.068 6 C -0.148 4.148 7 C -0.195 4.195 8 C -0.019 4.019 9 H 0.083 0.917 10 N -0.257 5.257 11 C -0.110 4.110 12 C 0.049 3.951 13 C -0.553 4.553 14 H 0.058 0.942 15 C -0.188 4.188 16 N -0.588 5.588 17 Si 0.768 3.232 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.178 1.178 21 H 0.085 0.915 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.174 0.826 25 H 0.113 0.887 26 H 0.049 0.951 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.005 0.995 35 H 0.038 0.962 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.260 -1.995 17.035 18.258 hybrid contribution 1.137 0.333 -0.797 1.428 sum 7.397 -1.662 16.237 17.920 Atomic orbital electron populations 1.21630 0.93689 1.01909 1.01624 1.21260 0.95851 0.94335 0.89214 0.94573 1.60194 1.07715 1.59814 1.04622 1.21938 0.87290 0.98700 0.98857 1.21527 1.00450 0.99675 0.93119 1.22275 0.97388 1.01013 0.98798 1.21762 0.92564 0.97569 0.90039 0.91673 1.61967 1.58318 1.03308 1.02138 1.22238 0.96325 0.90970 1.01488 1.19866 0.93526 0.93438 0.88243 1.21278 1.29923 1.11783 0.92286 0.94157 1.25808 0.96766 1.00739 0.95523 1.70048 1.45416 1.42523 1.00806 0.85761 0.79824 0.79798 0.77859 1.19079 1.20550 1.17823 0.91478 0.92758 0.93058 0.82570 0.88664 0.95086 0.90183 0.91838 0.91830 0.93725 0.95874 0.93409 0.90754 0.99499 0.96196 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.29 71.98 0.67 -2.97 16 2 C 0.10 2.86 2.37 44.94 0.11 2.97 16 3 H 0.04 1.01 6.51 -2.39 -0.02 0.99 16 4 N -0.69 -15.42 6.50 -491.67 -3.20 -18.62 16 5 C 0.06 1.21 6.55 86.33 0.57 1.77 16 6 C -0.11 -2.54 6.09 30.65 0.19 -2.36 16 7 C -0.16 -4.75 4.56 30.68 0.14 -4.61 16 8 C 0.09 3.07 1.79 44.97 0.08 3.15 16 9 H 0.06 2.43 7.93 -2.38 -0.02 2.41 16 10 N -0.53 -22.40 3.98 -901.30 -3.58 -25.98 16 11 C 0.04 1.47 8.60 127.69 1.10 2.56 16 12 C 0.18 8.70 3.37 85.56 0.29 8.99 16 13 C -0.51 -30.30 9.01 25.60 0.23 -30.07 16 14 H 0.04 2.63 7.37 -2.91 -0.02 2.61 16 15 C 0.01 0.53 5.47 84.65 0.46 0.99 16 16 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 17 Si 0.94 45.04 27.47 68.60 1.88 46.92 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.25 -11.46 6.54 99.48 0.65 -10.80 16 21 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.05 1.78 7.63 -2.39 -0.02 1.77 16 23 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.35 6.25 8.79 -89.69 -0.79 5.46 16 25 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 1.91 6.19 -2.39 -0.01 1.89 16 30 H 0.04 1.52 7.04 -2.39 -0.02 1.51 16 31 H 0.02 0.85 6.16 -2.39 -0.01 0.83 16 32 H 0.05 2.12 6.76 -2.39 -0.02 2.11 16 33 H 0.07 2.43 6.45 -2.39 -0.02 2.41 16 34 H -0.01 -0.62 6.18 -2.38 -0.01 -0.64 16 35 H 0.02 0.99 7.36 -2.38 -0.02 0.97 16 36 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -65.61 271.29 -0.57 -66.18 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.20 Total: 10.71 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 3.83 Total: -19.57 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -6.48 Total: -104.24 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal Total: -65.61 -0.57 -66.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306827559.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.181 kcal (2) G-P(sol) polarization free energy of solvation -65.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds