Wall clock time and date at job start Mon Mar 30 2020 03:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46763 * 2 1 4 4 N 1.46496 * 109.47520 * 239.99845 * 2 1 3 5 5 C 1.36939 * 120.00077 * 84.99720 * 4 2 1 6 6 H 1.07997 * 119.99728 * 359.72656 * 5 4 2 7 7 C 1.38815 * 119.99845 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99884 * 359.72042 * 7 5 4 9 9 Si 1.86798 * 119.99660 * 179.72678 * 7 5 4 10 10 H 1.48490 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 119.99875 * 9 7 5 12 12 H 1.48504 * 109.46636 * 239.99434 * 9 7 5 13 13 C 1.52997 * 109.47034 * 119.99430 * 2 1 3 14 14 C 1.53119 * 109.52289 * 59.87930 * 13 2 1 15 15 C 1.53049 * 109.27670 * 182.50542 * 14 13 2 16 16 N 1.46844 * 109.57766 * 59.07818 * 15 14 13 17 17 C 1.46897 * 110.99996 * 174.19539 * 16 15 14 18 18 C 1.46853 * 111.19679 * 298.29426 * 16 15 14 19 19 C 1.53033 * 109.52534 * 61.74223 * 18 16 15 20 20 H 1.09000 * 109.47016 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47798 * 300.00168 * 1 2 3 22 22 H 1.08999 * 109.47375 * 60.00752 * 1 2 3 23 23 H 0.97004 * 120.00009 * 265.00338 * 4 2 1 24 24 H 0.97000 * 119.99517 * 180.02562 * 8 7 5 25 25 H 1.09005 * 109.52563 * 180.02562 * 13 2 1 26 26 H 1.09004 * 109.50373 * 302.37840 * 14 13 2 27 27 H 1.08994 * 109.50704 * 62.49790 * 14 13 2 28 28 H 1.09005 * 109.40583 * 299.06508 * 15 14 13 29 29 H 1.09002 * 109.45330 * 179.12718 * 15 14 13 30 30 H 1.09001 * 109.47138 * 184.21397 * 17 16 15 31 31 H 1.09005 * 109.47167 * 304.21126 * 17 16 15 32 32 H 1.09002 * 109.46992 * 64.20945 * 17 16 15 33 33 H 1.08995 * 109.46149 * 301.72442 * 18 16 15 34 34 H 1.09003 * 109.45530 * 181.75848 * 18 16 15 35 35 H 1.09001 * 109.50341 * 180.87662 * 19 18 16 36 36 H 1.09003 * 109.50504 * 60.76111 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8880 1.0392 -2.4253 7 6 2.6115 -0.6621 -3.5092 8 7 2.9293 -1.9379 -3.4487 9 14 2.7826 0.2679 -5.1202 10 1 2.3631 1.6787 -4.9243 11 1 4.1985 0.2294 -5.5659 12 1 1.9217 -0.3656 -6.1511 13 6 2.0399 -0.7211 1.2493 14 6 1.5277 -2.1641 1.2521 15 6 1.9888 -2.8614 2.5342 16 7 1.4724 -2.1360 3.7018 17 6 1.7799 -2.8540 4.9459 18 6 1.9900 -0.7624 3.7452 19 6 1.5276 -0.0020 2.5003 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3635 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8900 23 1 2.2491 -1.6318 -1.1525 24 1 3.2527 -2.3951 -4.2407 25 1 3.1300 -0.7212 1.2504 26 1 0.4384 -2.1637 1.2109 27 1 1.9250 -2.6931 0.3860 28 1 3.0783 -2.8746 2.5675 29 1 1.6126 -3.8843 2.5464 30 1 1.3223 -2.3346 5.7879 31 1 1.3854 -3.8685 4.8870 32 1 2.8603 -2.8919 5.0860 33 1 3.0794 -0.7856 3.7729 34 1 1.6148 -0.2610 4.6374 35 1 1.9249 1.0127 2.5252 36 1 0.4384 0.0335 2.4792 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306871828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:02 Heat of formation + Delta-G solvation = 2.340839 kcal Electronic energy + Delta-G solvation = -14801.625873 eV Core-core repulsion = 12513.414454 eV Total energy + Delta-G solvation = -2288.211419 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.08618 -35.93302 -33.03191 -30.84018 -30.54754 -28.23196 -26.15881 -24.08196 -23.06239 -22.42854 -20.36786 -18.41606 -17.16259 -15.54378 -15.03140 -14.70239 -14.44566 -14.23028 -13.62945 -13.22029 -12.99828 -12.68778 -12.21356 -12.06201 -11.99164 -11.41872 -11.15140 -11.06488 -10.90523 -10.80618 -10.40368 -10.13238 -10.05979 -9.94295 -9.50786 -9.39663 -8.83961 -8.22273 -6.87803 -5.71204 -2.98408 3.46304 3.51989 3.54135 4.06273 4.63848 5.06246 5.10436 5.20415 5.30858 5.47539 5.54207 5.63496 5.68196 5.72252 5.80631 5.86199 5.93948 6.04532 6.07417 6.12054 6.38298 6.39718 6.44599 6.48805 6.68275 6.81878 6.88960 7.03107 7.15820 7.23604 7.32029 7.76430 8.48749 9.59466 10.19831 10.54378 11.52095 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.058253 B = 0.006903 C = 0.006508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.545502 B = 4055.180515 C = 4301.472874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.043 0.957 4 N -0.725 5.725 5 C -0.232 4.232 6 H 0.070 0.930 7 C -0.017 4.017 8 N -0.935 5.935 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 C -0.091 4.091 14 C -0.110 4.110 15 C 0.056 3.944 16 N -0.543 5.543 17 C 0.026 3.974 18 C 0.057 3.943 19 C -0.112 4.112 20 H 0.049 0.951 21 H 0.038 0.962 22 H 0.047 0.953 23 H 0.383 0.617 24 H 0.253 0.747 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.021 0.979 33 H 0.029 0.971 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 0.290 14.651 14.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.061 0.939 4 N -0.367 5.367 5 C -0.364 4.364 6 H 0.088 0.912 7 C -0.212 4.212 8 N -0.585 5.585 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.110 4.110 14 C -0.148 4.148 15 C -0.071 4.071 16 N -0.268 5.268 17 C -0.123 4.123 18 C -0.070 4.070 19 C -0.150 4.150 20 H 0.068 0.932 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.218 0.782 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.922 0.447 14.459 14.759 hybrid contribution 1.090 0.048 -0.866 1.393 sum -1.832 0.496 13.594 13.726 Atomic orbital electron populations 1.22520 0.99479 1.00958 0.99610 1.20186 0.91823 0.95034 0.86150 0.93869 1.42513 1.78114 1.10761 1.05359 1.19319 1.35710 0.93922 0.87441 0.91247 1.24716 1.02544 0.95989 0.97981 1.69670 1.51375 1.08768 1.28656 0.86142 0.77225 0.78784 0.84237 1.20629 1.21994 1.21972 1.21431 0.99779 0.95120 0.94707 1.21651 1.01820 0.95612 0.95726 1.22150 0.97006 0.97328 0.90666 1.61941 1.59862 1.02523 1.02477 1.22334 0.98525 0.99089 0.92349 1.22093 0.96937 0.89109 0.98902 1.21695 1.01981 0.97989 0.93332 0.93175 0.94270 0.93340 0.78198 0.93685 0.91838 0.90945 0.90687 0.95217 0.91211 0.91729 0.91617 0.96060 0.95280 0.91364 0.91841 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 8.79 37.16 0.33 -2.78 16 2 C 0.18 3.61 2.72 -67.94 -0.19 3.43 16 3 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 4 N -0.73 -18.41 5.04 -53.43 -0.27 -18.68 16 5 C -0.23 -6.56 9.93 -15.06 -0.15 -6.71 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 8 N -0.94 -28.62 13.06 55.49 0.72 -27.89 16 9 Si 0.90 22.72 29.55 -169.99 -5.02 17.70 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 C -0.09 -1.56 2.25 -90.50 -0.20 -1.76 16 14 C -0.11 -1.84 4.87 -26.64 -0.13 -1.97 16 15 C 0.06 0.81 5.46 -3.83 -0.02 0.79 16 16 N -0.54 -7.27 4.91 -242.95 -1.19 -8.46 16 17 C 0.03 0.27 9.59 60.06 0.58 0.85 16 18 C 0.06 0.74 5.46 -3.83 -0.02 0.72 16 19 C -0.11 -1.59 5.09 -26.65 -0.14 -1.72 16 20 H 0.05 0.95 6.38 -51.93 -0.33 0.62 16 21 H 0.04 0.62 6.38 -51.93 -0.33 0.29 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.38 10.23 6.12 -40.82 -0.25 9.98 16 24 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.07 1.23 6.31 -51.93 -0.33 0.90 16 27 H 0.07 1.41 6.61 -51.93 -0.34 1.07 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 32 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.07 6.31 -51.93 -0.33 0.75 16 LS Contribution 277.17 15.07 4.18 4.18 Total: -1.00 -30.08 277.17 -7.72 -37.80 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.10 Total: 5.10 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -0.04 Total: -9.74 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.74 Total: -55.04 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.08 -7.72 -37.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306871828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.140 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds