Wall clock time and date at job start Mon Mar 30 2020 03:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46763 * 2 1 4 4 N 1.46496 * 109.47520 * 239.99845 * 2 1 3 5 5 C 1.36939 * 120.00077 * 84.99720 * 4 2 1 6 6 H 1.07997 * 119.99728 * 359.72656 * 5 4 2 7 7 C 1.38815 * 119.99845 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99884 * 359.72042 * 7 5 4 9 9 Si 1.86798 * 119.99660 * 179.72678 * 7 5 4 10 10 H 1.48490 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 119.99875 * 9 7 5 12 12 H 1.48504 * 109.46636 * 239.99434 * 9 7 5 13 13 C 1.52997 * 109.47034 * 119.99430 * 2 1 3 14 14 C 1.53119 * 109.52289 * 59.87930 * 13 2 1 15 15 C 1.53049 * 109.27670 * 182.50542 * 14 13 2 16 16 N 1.46844 * 109.57766 * 59.07818 * 15 14 13 17 17 C 1.46897 * 110.99996 * 174.19539 * 16 15 14 18 18 C 1.46853 * 111.19679 * 298.29426 * 16 15 14 19 19 C 1.53033 * 109.52534 * 61.74223 * 18 16 15 20 20 H 1.09000 * 109.47016 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47798 * 300.00168 * 1 2 3 22 22 H 1.08999 * 109.47375 * 60.00752 * 1 2 3 23 23 H 0.97004 * 120.00009 * 265.00338 * 4 2 1 24 24 H 0.97000 * 119.99517 * 180.02562 * 8 7 5 25 25 H 1.09005 * 109.52563 * 180.02562 * 13 2 1 26 26 H 1.09004 * 109.50373 * 302.37840 * 14 13 2 27 27 H 1.08994 * 109.50704 * 62.49790 * 14 13 2 28 28 H 1.09005 * 109.40583 * 299.06508 * 15 14 13 29 29 H 1.09002 * 109.45330 * 179.12718 * 15 14 13 30 30 H 1.09001 * 109.47138 * 184.21397 * 17 16 15 31 31 H 1.09005 * 109.47167 * 304.21126 * 17 16 15 32 32 H 1.09002 * 109.46992 * 64.20945 * 17 16 15 33 33 H 1.08995 * 109.46149 * 301.72442 * 18 16 15 34 34 H 1.09003 * 109.45530 * 181.75848 * 18 16 15 35 35 H 1.09001 * 109.50341 * 180.87662 * 19 18 16 36 36 H 1.09003 * 109.50504 * 60.76111 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8880 1.0392 -2.4253 7 6 2.6115 -0.6621 -3.5092 8 7 2.9293 -1.9379 -3.4487 9 14 2.7826 0.2679 -5.1202 10 1 2.3631 1.6787 -4.9243 11 1 4.1985 0.2294 -5.5659 12 1 1.9217 -0.3656 -6.1511 13 6 2.0399 -0.7211 1.2493 14 6 1.5277 -2.1641 1.2521 15 6 1.9888 -2.8614 2.5342 16 7 1.4724 -2.1360 3.7018 17 6 1.7799 -2.8540 4.9459 18 6 1.9900 -0.7624 3.7452 19 6 1.5276 -0.0020 2.5003 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3635 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8900 23 1 2.2491 -1.6318 -1.1525 24 1 3.2527 -2.3951 -4.2407 25 1 3.1300 -0.7212 1.2504 26 1 0.4384 -2.1637 1.2109 27 1 1.9250 -2.6931 0.3860 28 1 3.0783 -2.8746 2.5675 29 1 1.6126 -3.8843 2.5464 30 1 1.3223 -2.3346 5.7879 31 1 1.3854 -3.8685 4.8870 32 1 2.8603 -2.8919 5.0860 33 1 3.0794 -0.7856 3.7729 34 1 1.6148 -0.2610 4.6374 35 1 1.9249 1.0127 2.5252 36 1 0.4384 0.0335 2.4792 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306871828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:02 Heat of formation + Delta-G solvation = -17.827326 kcal Electronic energy + Delta-G solvation = -14802.500431 eV Core-core repulsion = 12513.414454 eV Total energy + Delta-G solvation = -2289.085976 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.33694 -37.44052 -34.84563 -32.52913 -31.75860 -29.96576 -27.35320 -25.94973 -24.33850 -23.78250 -21.71669 -19.85037 -19.23229 -16.84584 -16.55066 -16.06825 -15.88666 -15.44768 -15.38027 -14.90184 -14.27558 -14.10558 -13.65014 -13.28671 -13.21653 -12.93877 -12.79677 -12.57724 -12.41248 -12.37667 -12.03118 -11.93523 -11.63386 -11.48561 -11.08454 -10.93079 -10.85366 -9.24801 -8.97235 -7.92525 -5.19592 1.46884 1.47596 1.57620 2.57422 3.05318 3.40982 3.82153 3.89684 3.95348 4.15566 4.34658 4.40051 4.46406 4.56410 4.61762 4.67410 4.74109 4.79966 4.91230 4.93895 4.97161 5.04282 5.12873 5.16567 5.22499 5.33634 5.41165 5.48260 5.57967 5.74695 6.15150 6.22044 6.31321 7.36639 8.15953 8.38744 9.31779 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.058253 B = 0.006903 C = 0.006508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.545502 B = 4055.180515 C = 4301.472874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.171 3.829 3 H 0.038 0.962 4 N -0.738 5.738 5 C -0.234 4.234 6 H 0.073 0.927 7 C -0.079 4.079 8 N -0.973 5.973 9 Si 0.971 3.029 10 H -0.267 1.267 11 H -0.294 1.294 12 H -0.294 1.294 13 C -0.083 4.083 14 C -0.105 4.105 15 C 0.063 3.937 16 N -0.552 5.552 17 C 0.025 3.975 18 C 0.059 3.941 19 C -0.105 4.105 20 H 0.044 0.956 21 H 0.072 0.928 22 H 0.029 0.971 23 H 0.373 0.627 24 H 0.250 0.750 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.024 0.976 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.023 0.977 33 H 0.026 0.974 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.054 1.220 16.238 16.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.063 3.937 3 H 0.056 0.944 4 N -0.379 5.379 5 C -0.367 4.367 6 H 0.091 0.909 7 C -0.271 4.271 8 N -0.624 5.624 9 Si 0.800 3.200 10 H -0.191 1.191 11 H -0.221 1.221 12 H -0.222 1.222 13 C -0.102 4.102 14 C -0.143 4.143 15 C -0.065 4.065 16 N -0.277 5.277 17 C -0.123 4.123 18 C -0.069 4.069 19 C -0.143 4.143 20 H 0.063 0.937 21 H 0.091 0.909 22 H 0.048 0.952 23 H 0.206 0.794 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.563 1.411 16.090 16.540 hybrid contribution 1.263 -0.222 -1.281 1.813 sum -2.299 1.189 14.809 15.033 Atomic orbital electron populations 1.22357 0.97808 1.00855 1.00350 1.20438 0.92875 0.94611 0.85801 0.94421 1.42739 1.78396 1.10479 1.06303 1.19689 1.34256 0.94185 0.88521 0.90887 1.25520 1.03300 0.96909 1.01373 1.69828 1.53004 1.10337 1.29249 0.85100 0.76738 0.78168 0.79965 1.19112 1.22144 1.22174 1.21306 0.98652 0.95484 0.94764 1.21532 1.01344 0.95314 0.96061 1.22021 0.96615 0.97714 0.90167 1.61950 1.59912 1.02870 1.02976 1.22410 0.98956 0.99481 0.91449 1.22115 0.96868 0.88936 0.98979 1.21647 1.02026 0.98428 0.92205 0.93687 0.90880 0.95154 0.79381 0.94166 0.93580 0.91198 0.93712 0.95813 0.90200 0.90010 0.90894 0.95796 0.95565 0.88883 0.90627 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.62 8.79 71.98 0.63 -4.99 16 2 C 0.17 6.91 2.72 44.99 0.12 7.03 16 3 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 4 N -0.74 -38.19 5.04 -322.95 -1.63 -39.82 16 5 C -0.23 -13.34 9.93 84.03 0.83 -12.51 16 6 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 7 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 8 N -0.97 -60.85 13.06 21.65 0.28 -60.56 16 9 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 12 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 13 C -0.08 -2.79 2.25 -10.72 -0.02 -2.81 16 14 C -0.10 -3.49 4.87 30.65 0.15 -3.34 16 15 C 0.06 1.74 5.46 86.33 0.47 2.21 16 16 N -0.55 -13.37 4.91 -922.55 -4.53 -17.90 16 17 C 0.02 0.46 9.59 127.69 1.22 1.68 16 18 C 0.06 1.34 5.46 86.32 0.47 1.82 16 19 C -0.11 -2.73 5.09 30.65 0.16 -2.57 16 20 H 0.04 1.67 6.38 -2.39 -0.02 1.66 16 21 H 0.07 2.15 6.38 -2.39 -0.02 2.14 16 22 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.37 20.64 6.12 -92.71 -0.57 20.07 16 24 H 0.25 15.10 8.31 -92.71 -0.77 14.32 16 25 H 0.05 1.70 8.14 -2.38 -0.02 1.69 16 26 H 0.07 2.34 6.31 -2.38 -0.02 2.33 16 27 H 0.04 1.75 6.61 -2.39 -0.02 1.73 16 28 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.08 2.03 8.09 -2.39 -0.02 2.01 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.24 8.09 -2.38 -0.02 1.22 16 32 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 1.72 8.12 -2.39 -0.02 1.70 16 35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 2.00 6.31 -2.39 -0.02 1.98 16 Total: -1.00 -64.27 277.17 1.13 -63.14 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.47 Total: 23.64 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 4.51 Total: -17.67 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -5.88 Total: -118.28 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -64.27 1.13 -63.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306871828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.315 kcal (2) G-P(sol) polarization free energy of solvation -64.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds