Wall clock time and date at job start Mon Mar 30 2020 03:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.47423 * 2 1 4 4 C 1.48534 * 111.00093 * 52.59780 * 3 2 1 5 5 C 1.54930 * 103.22685 * 159.72077 * 4 3 2 6 6 H 1.09002 * 110.87534 * 81.01644 * 5 4 3 7 7 C 1.52998 * 110.72964 * 204.23153 * 5 4 3 8 8 C 1.54601 * 102.92566 * 322.59175 * 5 4 3 9 9 H 1.09000 * 110.30651 * 263.04051 * 8 5 4 10 10 N 1.46499 * 110.31165 * 140.87005 * 8 5 4 11 11 C 1.46506 * 119.99815 * 302.83164 * 10 8 5 12 12 C 1.36933 * 119.99968 * 122.83271 * 10 8 5 13 13 H 1.08003 * 119.99967 * 23.47707 * 12 10 8 14 14 C 1.38808 * 120.00152 * 203.48095 * 12 10 8 15 15 N 1.31623 * 119.99902 * 11.48818 * 14 12 10 16 16 Si 1.86799 * 120.00330 * 191.48218 * 14 12 10 17 17 H 1.48502 * 109.46927 * 89.99956 * 16 14 12 18 18 H 1.48499 * 109.47296 * 210.00241 * 16 14 12 19 19 H 1.48504 * 109.47210 * 330.00068 * 16 14 12 20 20 C 1.47900 * 111.00129 * 169.99987 * 3 2 1 21 21 H 1.09002 * 109.46513 * 59.99987 * 1 2 3 22 22 H 1.09002 * 109.47425 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46641 * 300.00394 * 1 2 3 24 24 H 1.08994 * 109.46935 * 239.99746 * 2 1 3 25 25 H 1.09002 * 109.46513 * 120.00013 * 2 1 3 26 26 H 1.09001 * 110.66332 * 41.29058 * 4 3 2 27 27 H 1.08996 * 110.81479 * 278.23025 * 4 3 2 28 28 H 1.09000 * 109.47906 * 173.50438 * 7 5 4 29 29 H 1.08997 * 109.46859 * 293.50749 * 7 5 4 30 30 H 1.09002 * 109.46822 * 53.50234 * 7 5 4 31 31 H 1.09001 * 109.46567 * 94.30656 * 11 10 8 32 32 H 1.09000 * 109.46597 * 214.30521 * 11 10 8 33 33 H 1.08991 * 109.46992 * 334.30308 * 11 10 8 34 34 H 0.97005 * 120.00383 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.91638 * 94.80409 * 20 3 2 36 36 H 1.08996 * 109.91934 * 333.50627 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.4031 2.1676 1.1016 5 6 2.3781 3.3585 1.2792 6 1 2.1873 4.1312 0.5345 7 6 2.2769 3.9350 2.6928 8 6 3.7625 2.7090 1.0511 9 1 4.2236 2.4562 2.0059 10 7 4.6289 3.6126 0.2902 11 6 4.2044 4.0999 -1.0246 12 6 5.8355 4.0015 0.8077 13 1 6.3257 3.3915 1.5521 14 6 6.4286 5.1799 0.3758 15 7 5.7415 6.0338 -0.3530 16 14 8.2018 5.5538 0.8289 17 1 9.1053 5.0077 -0.2156 18 1 8.3886 7.0238 0.9258 19 1 8.5213 4.9270 2.1367 20 6 3.4785 1.4314 0.2398 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.3517 1.5732 2.0138 27 1 0.4119 2.5210 0.8179 28 1 3.0484 4.6923 2.8326 29 1 1.2948 4.3870 2.8313 30 1 2.4154 3.1364 3.4216 31 1 3.7143 5.0671 -0.9127 32 1 5.0755 4.2067 -1.6711 33 1 3.5078 3.3887 -1.4682 34 1 6.1560 6.8571 -0.6552 35 1 4.0100 1.4695 -0.7111 36 1 3.7896 0.5543 0.8072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306975769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:06 Heat of formation + Delta-G solvation = 24.082692 kcal Electronic energy + Delta-G solvation = -15078.440468 eV Core-core repulsion = 12791.171847 eV Total energy + Delta-G solvation = -2287.268622 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.91005 -35.23227 -33.07864 -30.81836 -30.02287 -27.04856 -25.81682 -25.56750 -22.78709 -21.42638 -20.10649 -18.73695 -16.76264 -15.70518 -15.07279 -14.63257 -14.35566 -13.65292 -13.24783 -12.81205 -12.62716 -12.27480 -12.12964 -11.96712 -11.75908 -11.28273 -10.94446 -10.84574 -10.72916 -10.63116 -10.32855 -10.24213 -10.14389 -9.98223 -9.77266 -9.65185 -8.46893 -7.97223 -6.64594 -5.64990 -3.11713 3.41468 3.47572 3.48791 4.39959 4.54604 5.14317 5.21376 5.30821 5.42794 5.53467 5.59367 5.67543 5.79907 5.83801 5.94938 5.98305 6.10062 6.17084 6.18649 6.25339 6.36694 6.46064 6.63567 6.80084 6.92040 6.99717 7.08827 7.42805 7.50257 7.52967 7.84320 7.90736 8.47871 9.31884 9.95470 10.46216 11.39155 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.050088 B = 0.008154 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.881160 B = 3433.170800 C = 3578.530466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.042 3.958 3 N -0.516 5.516 4 C 0.041 3.959 5 C -0.114 4.114 6 H 0.085 0.915 7 C -0.132 4.132 8 C 0.176 3.824 9 H 0.065 0.935 10 N -0.589 5.589 11 C 0.164 3.836 12 C -0.255 4.255 13 H 0.066 0.934 14 C 0.003 3.997 15 N -0.906 5.906 16 Si 0.903 3.097 17 H -0.289 1.289 18 H -0.292 1.292 19 H -0.280 1.280 20 C 0.020 3.980 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.028 0.972 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.026 0.974 32 H 0.038 0.962 33 H 0.009 0.991 34 H 0.251 0.749 35 H 0.082 0.918 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.398 -8.670 2.422 12.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.086 4.086 3 N -0.240 5.240 4 C -0.087 4.087 5 C -0.135 4.135 6 H 0.103 0.897 7 C -0.190 4.190 8 C 0.066 3.934 9 H 0.083 0.917 10 N -0.310 5.310 11 C 0.019 3.981 12 C -0.384 4.384 13 H 0.084 0.916 14 C -0.196 4.196 15 N -0.551 5.551 16 Si 0.733 3.267 17 H -0.216 1.216 18 H -0.218 1.218 19 H -0.206 1.206 20 C -0.110 4.110 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.027 0.973 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.448 -8.286 1.820 11.972 hybrid contribution 1.155 -0.114 0.968 1.511 sum -7.292 -8.400 2.788 11.468 Atomic orbital electron populations 1.21833 0.95417 1.01123 1.02399 1.22234 0.95516 0.90617 1.00276 1.64775 1.05503 1.10504 1.43256 1.23222 0.98378 0.95063 0.92007 1.22665 0.96402 0.96956 0.97492 0.89671 1.21635 1.00968 1.00635 0.95725 1.21211 0.89797 0.88876 0.93518 0.91666 1.43942 1.17679 1.53283 1.16071 1.20717 0.96893 0.95200 0.85268 1.19225 0.95011 1.02452 1.21751 0.91632 1.25022 0.98556 0.95501 1.00496 1.70084 1.34879 1.09994 1.40161 0.86277 0.85141 0.77123 0.78114 1.21573 1.21804 1.20594 1.23601 0.87494 0.98693 1.01219 0.91961 0.92798 0.92712 0.91173 0.95377 0.94644 0.91148 0.91755 0.93856 0.93838 0.95538 0.94347 0.97259 0.93855 0.89925 0.95024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.57 37.16 0.36 -1.36 16 2 C 0.04 0.58 5.75 -3.82 -0.02 0.55 16 3 N -0.52 -8.66 5.40 -230.46 -1.24 -9.90 16 4 C 0.04 0.66 4.54 -1.90 -0.01 0.65 16 5 C -0.11 -2.15 3.24 -88.76 -0.29 -2.44 16 6 H 0.08 1.83 7.01 -51.93 -0.36 1.47 16 7 C -0.13 -2.26 9.16 37.16 0.34 -1.92 16 8 C 0.18 3.71 3.05 -66.57 -0.20 3.50 16 9 H 0.07 1.39 7.63 -51.93 -0.40 1.00 16 10 N -0.59 -14.95 2.83 -171.93 -0.49 -15.44 16 11 C 0.16 4.17 7.48 59.85 0.45 4.61 16 12 C -0.25 -7.06 9.60 -15.06 -0.14 -7.21 16 13 H 0.07 1.78 7.84 -52.48 -0.41 1.37 16 14 C 0.00 0.07 5.12 -17.43 -0.09 -0.02 16 15 N -0.91 -26.77 10.66 55.49 0.59 -26.18 16 16 Si 0.90 22.09 29.57 -169.99 -5.03 17.07 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.02 0.37 5.82 -2.75 -0.02 0.35 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.62 6.79 -51.93 -0.35 0.27 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.03 0.38 7.81 -51.93 -0.41 -0.03 16 26 H 0.04 0.53 7.88 -51.93 -0.41 0.12 16 27 H 0.07 1.05 7.67 -51.93 -0.40 0.66 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.03 0.73 7.28 -51.93 -0.38 0.35 16 32 H 0.04 1.05 7.28 -51.93 -0.38 0.67 16 33 H 0.01 0.21 6.94 -51.93 -0.36 -0.15 16 34 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.08 1.70 7.08 -51.93 -0.37 1.33 16 36 H 0.03 0.55 7.57 -51.93 -0.39 0.16 16 LS Contribution 279.00 15.07 4.20 4.20 Total: -1.00 -29.10 279.00 -7.87 -36.97 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -6.28 Total: -3.45 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 0.37 Total: -3.28 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -1.14 Total: -51.52 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.10 -7.87 -36.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306975769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.057 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds