Wall clock time and date at job start Mon Mar 30 2020 03:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.47423 * 2 1 4 4 C 1.48534 * 111.00093 * 52.59780 * 3 2 1 5 5 C 1.54930 * 103.22685 * 159.72077 * 4 3 2 6 6 H 1.09002 * 110.87534 * 81.01644 * 5 4 3 7 7 C 1.52998 * 110.72964 * 204.23153 * 5 4 3 8 8 C 1.54601 * 102.92566 * 322.59175 * 5 4 3 9 9 H 1.09000 * 110.30651 * 263.04051 * 8 5 4 10 10 N 1.46499 * 110.31165 * 140.87005 * 8 5 4 11 11 C 1.46506 * 119.99815 * 302.83164 * 10 8 5 12 12 C 1.36933 * 119.99968 * 122.83271 * 10 8 5 13 13 H 1.08003 * 119.99967 * 23.47707 * 12 10 8 14 14 C 1.38808 * 120.00152 * 203.48095 * 12 10 8 15 15 N 1.31623 * 119.99902 * 11.48818 * 14 12 10 16 16 Si 1.86799 * 120.00330 * 191.48218 * 14 12 10 17 17 H 1.48502 * 109.46927 * 89.99956 * 16 14 12 18 18 H 1.48499 * 109.47296 * 210.00241 * 16 14 12 19 19 H 1.48504 * 109.47210 * 330.00068 * 16 14 12 20 20 C 1.47900 * 111.00129 * 169.99987 * 3 2 1 21 21 H 1.09002 * 109.46513 * 59.99987 * 1 2 3 22 22 H 1.09002 * 109.47425 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46641 * 300.00394 * 1 2 3 24 24 H 1.08994 * 109.46935 * 239.99746 * 2 1 3 25 25 H 1.09002 * 109.46513 * 120.00013 * 2 1 3 26 26 H 1.09001 * 110.66332 * 41.29058 * 4 3 2 27 27 H 1.08996 * 110.81479 * 278.23025 * 4 3 2 28 28 H 1.09000 * 109.47906 * 173.50438 * 7 5 4 29 29 H 1.08997 * 109.46859 * 293.50749 * 7 5 4 30 30 H 1.09002 * 109.46822 * 53.50234 * 7 5 4 31 31 H 1.09001 * 109.46567 * 94.30656 * 11 10 8 32 32 H 1.09000 * 109.46597 * 214.30521 * 11 10 8 33 33 H 1.08991 * 109.46992 * 334.30308 * 11 10 8 34 34 H 0.97005 * 120.00383 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.91638 * 94.80409 * 20 3 2 36 36 H 1.08996 * 109.91934 * 333.50627 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.4031 2.1676 1.1016 5 6 2.3781 3.3585 1.2792 6 1 2.1873 4.1312 0.5345 7 6 2.2769 3.9350 2.6928 8 6 3.7625 2.7090 1.0511 9 1 4.2236 2.4562 2.0059 10 7 4.6289 3.6126 0.2902 11 6 4.2044 4.0999 -1.0246 12 6 5.8355 4.0015 0.8077 13 1 6.3257 3.3915 1.5521 14 6 6.4286 5.1799 0.3758 15 7 5.7415 6.0338 -0.3530 16 14 8.2018 5.5538 0.8289 17 1 9.1053 5.0077 -0.2156 18 1 8.3886 7.0238 0.9258 19 1 8.5213 4.9270 2.1367 20 6 3.4785 1.4314 0.2398 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.3517 1.5732 2.0138 27 1 0.4119 2.5210 0.8179 28 1 3.0484 4.6923 2.8326 29 1 1.2948 4.3870 2.8313 30 1 2.4154 3.1364 3.4216 31 1 3.7143 5.0671 -0.9127 32 1 5.0755 4.2067 -1.6711 33 1 3.5078 3.3887 -1.4682 34 1 6.1560 6.8571 -0.6552 35 1 4.0100 1.4695 -0.7111 36 1 3.7896 0.5543 0.8072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306975769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:06 Heat of formation + Delta-G solvation = 5.261819 kcal Electronic energy + Delta-G solvation = -15079.256603 eV Core-core repulsion = 12791.171847 eV Total energy + Delta-G solvation = -2288.084756 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37901 -36.98450 -34.64159 -32.71449 -31.34203 -28.62251 -27.92264 -26.91612 -24.51790 -22.88090 -21.42384 -20.39181 -18.80747 -17.42219 -16.49781 -16.15518 -15.77224 -15.33290 -14.95785 -14.48055 -14.06877 -13.75176 -13.62314 -13.44445 -13.05319 -12.86045 -12.78848 -12.36920 -12.35053 -12.18621 -12.03936 -11.88487 -11.80529 -11.68891 -11.51545 -11.37095 -10.60026 -9.25708 -8.72129 -7.79758 -5.28722 1.46334 1.47752 1.56334 2.51505 3.13635 3.32499 3.63134 3.90673 3.95594 4.22941 4.29627 4.39604 4.44730 4.56839 4.65795 4.69943 4.78460 4.85858 4.94501 4.97979 5.00513 5.12921 5.18731 5.25242 5.35858 5.37835 5.44600 5.52152 5.65447 5.75008 6.04195 6.27298 6.35585 7.17863 7.90591 8.36872 9.23321 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.050088 B = 0.008154 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.881160 B = 3433.170800 C = 3578.530466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.040 3.960 3 N -0.530 5.530 4 C 0.054 3.946 5 C -0.112 4.112 6 H 0.053 0.947 7 C -0.125 4.125 8 C 0.166 3.834 9 H 0.061 0.939 10 N -0.603 5.603 11 C 0.189 3.811 12 C -0.263 4.263 13 H 0.069 0.931 14 C -0.053 4.053 15 N -0.939 5.939 16 Si 0.969 3.031 17 H -0.287 1.287 18 H -0.295 1.295 19 H -0.268 1.268 20 C 0.032 3.968 21 H 0.055 0.945 22 H 0.075 0.925 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.030 0.970 29 H 0.066 0.934 30 H 0.063 0.937 31 H -0.002 1.002 32 H 0.010 0.990 33 H 0.028 0.972 34 H 0.247 0.753 35 H 0.060 0.940 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.319 -10.370 3.515 14.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 N -0.255 5.255 4 C -0.073 4.073 5 C -0.133 4.133 6 H 0.071 0.929 7 C -0.183 4.183 8 C 0.058 3.942 9 H 0.079 0.921 10 N -0.325 5.325 11 C 0.044 3.956 12 C -0.393 4.393 13 H 0.087 0.913 14 C -0.248 4.248 15 N -0.586 5.586 16 Si 0.797 3.203 17 H -0.214 1.214 18 H -0.222 1.222 19 H -0.192 1.192 20 C -0.098 4.098 21 H 0.075 0.925 22 H 0.094 0.906 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.017 0.983 32 H 0.029 0.971 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.393 -10.026 2.934 14.049 hybrid contribution 1.388 0.346 0.637 1.566 sum -8.005 -9.680 3.571 13.059 Atomic orbital electron populations 1.21796 0.93484 1.02620 1.02287 1.22339 0.97075 0.88614 1.00788 1.64743 1.04102 1.12825 1.43851 1.23146 0.97894 0.93601 0.92684 1.22535 0.95870 0.97304 0.97629 0.92856 1.21564 1.01150 1.00425 0.95115 1.21446 0.90259 0.89228 0.93242 0.92055 1.44114 1.18096 1.53888 1.16435 1.20321 0.95545 0.94349 0.85382 1.19567 0.96087 1.02341 1.21317 0.91300 1.25797 1.02453 0.95549 1.00990 1.70255 1.36381 1.10310 1.41635 0.85241 0.80350 0.76479 0.78219 1.21405 1.22192 1.19247 1.23298 0.89039 0.97761 0.99714 0.92544 0.90574 0.92314 0.90982 0.94534 0.92649 0.89618 0.95063 0.91533 0.91756 0.98324 0.97141 0.95380 0.94397 0.92182 0.93425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.57 71.98 0.69 -2.09 16 2 C 0.04 0.96 5.75 86.30 0.50 1.46 16 3 N -0.53 -16.60 5.40 -883.04 -4.76 -21.36 16 4 C 0.05 1.58 4.54 86.65 0.39 1.98 16 5 C -0.11 -4.14 3.24 -9.59 -0.03 -4.17 16 6 H 0.05 2.31 7.01 -2.39 -0.02 2.30 16 7 C -0.12 -4.10 9.16 71.98 0.66 -3.45 16 8 C 0.17 6.93 3.05 45.87 0.14 7.07 16 9 H 0.06 2.57 7.63 -2.39 -0.02 2.55 16 10 N -0.60 -31.20 2.83 -697.86 -1.97 -33.17 16 11 C 0.19 9.94 7.48 127.77 0.96 10.90 16 12 C -0.26 -14.77 9.60 84.03 0.81 -13.96 16 13 H 0.07 3.75 7.84 -2.91 -0.02 3.72 16 14 C -0.05 -3.04 5.12 84.86 0.43 -2.60 16 15 N -0.94 -57.13 10.66 21.65 0.23 -56.90 16 16 Si 0.97 45.96 29.57 68.60 2.03 47.99 16 17 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 18 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 20 C 0.03 1.15 5.82 86.45 0.50 1.65 16 21 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.06 1.09 6.79 -2.39 -0.02 1.07 16 24 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.04 0.84 7.81 -2.39 -0.02 0.82 16 26 H 0.06 1.42 7.88 -2.39 -0.02 1.40 16 27 H 0.09 2.28 7.67 -2.39 -0.02 2.26 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 31 H 0.00 -0.09 7.28 -2.39 -0.02 -0.11 16 32 H 0.01 0.57 7.28 -2.39 -0.02 0.55 16 33 H 0.03 1.33 6.94 -2.39 -0.02 1.31 16 34 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 35 H 0.06 2.44 7.08 -2.39 -0.02 2.43 16 36 H 0.05 1.55 7.57 -2.39 -0.02 1.53 16 Total: -1.00 -63.22 279.00 1.59 -61.64 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 1.02 Total: 5.02 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 5.05 Total: -3.21 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -6.51 Total: -111.44 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -63.22 1.59 -61.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306975769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.900 kcal (2) G-P(sol) polarization free energy of solvation -63.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds