Wall clock time and date at job start Mon Mar 30 2020 03:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46895 * 109.46867 * 2 1 4 4 C 1.48571 * 110.99748 * 169.99870 * 3 2 1 5 5 C 1.54378 * 104.59121 * 159.03862 * 4 3 2 6 6 H 1.09001 * 110.32513 * 217.25269 * 5 4 3 7 7 N 1.46503 * 110.32382 * 95.04760 * 5 4 3 8 8 C 1.46501 * 119.99668 * 301.45055 * 7 5 4 9 9 C 1.36934 * 120.00180 * 121.45039 * 7 5 4 10 10 H 1.07999 * 119.99823 * 23.09529 * 9 7 5 11 11 C 1.38807 * 120.00140 * 203.09466 * 9 7 5 12 12 N 1.31628 * 119.99863 * 12.99155 * 11 9 7 13 13 Si 1.86796 * 120.00508 * 192.99567 * 11 9 7 14 14 H 1.48514 * 109.46736 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47375 * 119.99684 * 13 11 9 16 16 H 1.48500 * 109.47447 * 240.00505 * 13 11 9 17 17 C 1.54259 * 105.06395 * 336.14852 * 5 4 3 18 18 H 1.09001 * 110.32394 * 118.89366 * 17 5 4 19 19 C 1.53007 * 110.32441 * 241.10457 * 17 5 4 20 20 C 1.48563 * 111.00094 * 285.41832 * 3 2 1 21 21 H 1.09001 * 109.46823 * 59.99979 * 1 2 3 22 22 H 1.09008 * 109.46885 * 300.00054 * 1 2 3 23 23 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46823 * 120.00020 * 2 1 3 25 25 H 1.08994 * 109.46970 * 239.99857 * 2 1 3 26 26 H 1.09000 * 110.40638 * 277.81740 * 4 3 2 27 27 H 1.08993 * 110.40599 * 40.14611 * 4 3 2 28 28 H 1.09000 * 109.47410 * 95.12760 * 8 7 5 29 29 H 1.09001 * 109.46805 * 215.12661 * 8 7 5 30 30 H 1.08999 * 109.47027 * 335.12159 * 8 7 5 31 31 H 0.96997 * 120.00076 * 180.02562 * 12 11 9 32 32 H 1.08999 * 109.46857 * 60.00129 * 19 17 5 33 33 H 1.09002 * 109.46979 * 180.02562 * 19 17 5 34 34 H 1.08994 * 109.46902 * 300.00347 * 19 17 5 35 35 H 1.08999 * 110.40799 * 319.73899 * 20 3 2 36 36 H 1.08992 * 110.41071 * 82.18583 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4850 1.4316 0.2409 5 6 3.9260 2.8050 -0.3092 6 1 4.9022 2.7255 -0.7876 7 7 3.9658 3.7961 0.7690 8 6 2.7567 4.0832 1.5448 9 6 5.1330 4.4540 1.0516 10 1 5.8991 4.5434 0.2956 11 6 5.3316 5.0059 2.3096 12 7 4.5287 4.6866 3.3026 13 14 6.7380 6.2020 2.5935 14 1 7.4885 6.3933 1.3263 15 1 6.1941 7.5066 3.0489 16 1 7.6500 5.6566 3.6308 17 6 2.8501 3.1854 -1.3472 18 1 2.3516 4.1094 -1.0545 19 6 3.4792 3.3358 -2.7339 20 6 1.8495 2.0098 -1.3370 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.6971 1.3635 1.3079 27 1 3.9844 0.6263 -0.2975 28 1 2.7563 3.4810 2.4533 29 1 2.7375 5.1404 1.8097 30 1 1.8766 3.8421 0.9486 31 1 4.6672 5.0725 4.1816 32 1 3.9396 2.3927 -3.0281 33 1 2.7078 3.6048 -3.4555 34 1 4.2383 4.1174 -2.7056 35 1 2.0934 1.2962 -2.1239 36 1 0.8304 2.3770 -1.4580 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306975785.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:09 Heat of formation + Delta-G solvation = 24.931782 kcal Electronic energy + Delta-G solvation = -15127.951838 eV Core-core repulsion = 12840.720035 eV Total energy + Delta-G solvation = -2287.231802 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.88067 -35.06358 -33.15947 -30.72929 -29.95522 -27.26374 -25.70049 -25.40757 -22.73741 -21.35621 -20.26340 -18.70173 -16.70482 -15.65368 -15.01651 -14.55124 -14.35176 -13.54161 -13.24330 -12.98499 -12.57090 -12.23042 -12.07238 -11.93756 -11.70340 -11.24621 -11.06223 -10.74189 -10.65184 -10.58289 -10.29588 -10.28534 -10.12924 -10.02330 -9.69826 -9.63396 -8.44239 -7.94520 -6.60200 -5.60871 -3.07492 3.42612 3.49627 3.51605 4.47169 4.56922 5.16474 5.22151 5.37372 5.44539 5.55498 5.66385 5.69723 5.75423 5.85986 5.96853 6.02568 6.06608 6.14661 6.20476 6.25101 6.37351 6.47258 6.54383 6.65702 6.90505 7.00330 7.18755 7.45400 7.56746 7.59236 7.89848 8.02037 8.51642 9.36039 10.00591 10.51590 11.42380 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041209 B = 0.008982 C = 0.007969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.306141 B = 3116.569642 C = 3512.669664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.040 3.960 3 N -0.503 5.503 4 C 0.016 3.984 5 C 0.182 3.818 6 H 0.067 0.933 7 N -0.588 5.588 8 C 0.170 3.830 9 C -0.254 4.254 10 H 0.066 0.934 11 C 0.001 3.999 12 N -0.904 5.904 13 Si 0.901 3.099 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.292 1.292 17 C -0.117 4.117 18 H 0.083 0.917 19 C -0.135 4.135 20 C 0.041 3.959 21 H 0.050 0.950 22 H 0.062 0.938 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.027 0.973 26 H 0.086 0.914 27 H 0.026 0.974 28 H 0.027 0.973 29 H 0.030 0.970 30 H 0.012 0.988 31 H 0.250 0.750 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.033 0.967 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.331 -6.657 -8.679 12.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 N -0.227 5.227 4 C -0.114 4.114 5 C 0.072 3.928 6 H 0.085 0.915 7 N -0.309 5.309 8 C 0.026 3.974 9 C -0.384 4.384 10 H 0.084 0.916 11 C -0.197 4.197 12 N -0.549 5.549 13 Si 0.732 3.268 14 H -0.204 1.204 15 H -0.217 1.217 16 H -0.219 1.219 17 C -0.138 4.138 18 H 0.102 0.898 19 C -0.193 4.193 20 C -0.087 4.087 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.045 0.955 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.030 0.970 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.633 -6.306 -8.057 11.679 hybrid contribution 1.165 0.076 -0.290 1.203 sum -4.468 -6.229 -8.348 11.334 Atomic orbital electron populations 1.21709 0.95324 1.00650 1.02358 1.22207 0.95984 0.90554 1.00145 1.65392 1.15434 1.15257 1.26579 1.23846 0.86657 0.98593 1.02266 1.21100 0.95412 0.87386 0.88912 0.91522 1.43958 1.07866 1.42417 1.36636 1.20651 0.84968 0.98542 0.93236 1.19269 0.95471 1.28522 0.95143 0.91627 1.25013 0.98295 1.01114 0.95278 1.70114 1.39365 1.44970 1.00435 0.86236 0.81928 0.81035 0.77647 1.20429 1.21725 1.21874 1.22555 0.97085 0.98511 0.95696 0.89848 1.21762 1.00229 1.01130 0.96194 1.23140 0.99515 0.96120 0.89970 0.93101 0.91880 0.93055 0.91296 0.95491 0.89601 0.95539 0.95427 0.95174 0.96978 0.93979 0.93520 0.93585 0.92392 0.94836 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 10.03 37.16 0.37 -1.41 16 2 C 0.04 0.58 5.55 -3.82 -0.02 0.56 16 3 N -0.50 -8.81 4.74 -229.97 -1.09 -9.90 16 4 C 0.02 0.32 5.68 -2.18 -0.01 0.30 16 5 C 0.18 3.82 3.19 -66.55 -0.21 3.61 16 6 H 0.07 1.41 7.48 -51.93 -0.39 1.02 16 7 N -0.59 -15.03 2.79 -171.90 -0.48 -15.51 16 8 C 0.17 4.39 7.98 59.85 0.48 4.87 16 9 C -0.25 -7.10 9.60 -15.06 -0.14 -7.25 16 10 H 0.07 1.79 7.84 -52.49 -0.41 1.38 16 11 C 0.00 0.04 5.10 -17.43 -0.09 -0.05 16 12 N -0.90 -26.98 10.72 55.49 0.59 -26.39 16 13 Si 0.90 22.22 29.57 -169.99 -5.03 17.19 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 C -0.12 -2.09 2.78 -89.23 -0.25 -2.34 16 18 H 0.08 1.66 6.96 -51.93 -0.36 1.29 16 19 C -0.14 -2.02 8.92 37.16 0.33 -1.69 16 20 C 0.04 0.65 5.46 -2.18 -0.01 0.64 16 21 H 0.05 0.62 7.47 -51.93 -0.39 0.23 16 22 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 25 H 0.03 0.37 7.77 -51.93 -0.40 -0.04 16 26 H 0.09 1.93 8.05 -51.93 -0.42 1.51 16 27 H 0.03 0.47 7.99 -51.93 -0.42 0.05 16 28 H 0.03 0.78 7.34 -51.93 -0.38 0.40 16 29 H 0.03 0.83 7.35 -51.93 -0.38 0.45 16 30 H 0.01 0.28 6.36 -51.93 -0.33 -0.05 16 31 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.49 7.44 -51.93 -0.39 0.11 16 36 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 LS Contribution 280.39 15.07 4.23 4.23 Total: -1.00 -29.52 280.39 -7.67 -37.20 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -6.34 Total: -4.06 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 0.44 Total: -2.76 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.98 Total: -51.80 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.52 -7.67 -37.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306975785.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.129 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds