Wall clock time and date at job start Mon Mar 30 2020 02:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 108.92001 * 2 1 4 4 C 1.46136 * 108.86729 * 118.66655 * 2 1 3 5 5 C 1.54253 * 111.90592 * 181.50983 * 4 2 1 6 6 N 1.44250 * 108.64045 * 281.38171 * 5 4 2 7 7 C 1.46904 * 110.99721 * 219.84525 * 6 5 4 8 8 C 1.48195 * 114.27025 * 93.39931 * 6 5 4 9 9 C 1.53929 * 112.77226 * 318.13292 * 8 6 5 10 10 N 1.44262 * 112.55892 * 318.38080 * 9 8 6 11 11 C 1.46903 * 111.00258 * 217.13173 * 10 9 8 12 12 C 1.50709 * 109.46918 * 47.35012 * 11 10 9 13 13 H 1.07995 * 119.99945 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99544 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00387 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99513 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46922 * 90.00641 * 16 14 12 18 18 H 1.48505 * 109.47326 * 210.00293 * 16 14 12 19 19 H 1.48500 * 109.47496 * 330.00380 * 16 14 12 20 20 H 1.08992 * 109.47599 * 178.70396 * 1 2 3 21 21 H 1.09001 * 109.46994 * 298.70292 * 1 2 3 22 22 H 1.09003 * 109.47103 * 58.69860 * 1 2 3 23 23 H 1.08994 * 108.99387 * 302.13842 * 4 2 1 24 24 H 1.09003 * 108.99492 * 60.88445 * 4 2 1 25 25 H 1.08999 * 109.60491 * 41.12903 * 5 4 2 26 26 H 1.09003 * 109.60578 * 161.63165 * 5 4 2 27 27 H 1.09001 * 109.46872 * 60.00185 * 7 6 5 28 28 H 1.09003 * 109.47053 * 179.97438 * 7 6 5 29 29 H 1.08991 * 109.47198 * 300.00444 * 7 6 5 30 30 H 1.08999 * 108.82170 * 78.97927 * 8 6 5 31 31 H 1.08993 * 108.82238 * 197.39303 * 8 6 5 32 32 H 1.09003 * 108.86545 * 197.58598 * 9 8 6 33 33 H 1.09003 * 108.86492 * 79.16772 * 9 8 6 34 34 H 1.08992 * 109.46937 * 167.35120 * 11 10 9 35 35 H 1.08992 * 109.46774 * 287.35796 * 11 10 9 36 36 H 0.96994 * 120.00161 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8834 1.0311 0.0000 4 6 2.0026 -0.6634 1.2133 5 6 3.5425 -0.6696 1.3033 6 7 4.0504 -1.7097 0.4426 7 6 5.1788 -2.4091 1.0715 8 6 4.4031 -1.2528 -0.9224 9 6 3.3687 -0.2755 -1.5093 10 7 2.0106 -0.6728 -1.2288 11 6 1.1304 -0.3800 -2.3679 12 6 1.7745 -0.8700 -3.6393 13 1 2.7407 -1.3511 -3.6045 14 6 1.1295 -0.7049 -4.8467 15 7 -0.0473 -0.1195 -4.8890 16 14 1.9275 -1.3128 -6.4225 17 1 1.5149 -2.7165 -6.6766 18 1 1.4972 -0.4572 -7.5574 19 1 3.4049 -1.2481 -6.2862 20 1 -0.3634 -1.0273 -0.0232 21 1 -0.3633 0.4936 0.9014 22 1 -0.3633 0.5339 -0.8781 23 1 1.5985 -0.1437 2.0821 24 1 1.6427 -1.6923 1.2183 25 1 3.9316 0.2957 0.9796 26 1 3.8480 -0.8638 2.3315 27 1 4.8505 -2.8598 2.0081 28 1 5.5423 -3.1884 0.4015 29 1 5.9806 -1.6985 1.2717 30 1 5.3739 -0.7584 -0.8878 31 1 4.4745 -2.1216 -1.5766 32 1 3.5051 -0.2249 -2.5896 33 1 3.5405 0.7148 -1.0875 34 1 0.1743 -0.8842 -2.2272 35 1 0.9677 0.6956 -2.4342 36 1 -0.5008 -0.0031 -5.7385 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307024305.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:00 Heat of formation + Delta-G solvation = 18.325563 kcal Electronic energy + Delta-G solvation = -15156.125277 eV Core-core repulsion = 12868.607007 eV Total energy + Delta-G solvation = -2287.518270 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.99145 -35.84041 -33.38676 -32.04978 -29.20048 -28.10863 -26.18560 -24.62239 -22.84678 -21.99979 -19.67892 -18.94606 -16.38197 -15.66109 -15.49905 -14.61430 -14.42354 -14.10875 -13.42033 -13.14104 -12.57577 -12.54345 -12.22067 -11.95597 -11.63923 -11.38241 -11.09755 -11.01497 -10.91797 -10.59188 -10.54572 -10.24529 -10.12917 -9.75028 -9.60837 -8.95593 -8.45072 -7.72419 -7.02403 -6.02625 -4.03318 3.32338 3.38415 3.40980 4.29600 4.43360 4.95723 5.28174 5.32978 5.34704 5.50211 5.64734 5.72096 5.81635 5.89586 5.97710 5.99914 6.04271 6.14199 6.21007 6.31185 6.46332 6.53557 6.70826 6.79861 6.87799 6.95942 7.40694 7.51905 7.57004 7.70811 7.80979 8.14686 8.40937 8.65447 9.05617 9.60433 11.08449 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034578 B = 0.009681 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.562841 B = 2891.545827 C = 3557.543734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.083 3.917 3 H 0.022 0.978 4 C -0.103 4.103 5 C 0.071 3.929 6 N -0.544 5.544 7 C 0.033 3.967 8 C 0.076 3.924 9 C 0.050 3.950 10 N -0.513 5.513 11 C 0.192 3.808 12 C -0.517 4.517 13 H 0.066 0.934 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.274 1.274 20 H 0.060 0.940 21 H 0.043 0.957 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.031 0.969 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.014 0.986 30 H 0.020 0.980 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.012 0.988 34 H 0.037 0.963 35 H -0.012 1.012 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.582 -0.444 10.482 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 H 0.040 0.960 4 C -0.141 4.141 5 C -0.058 4.058 6 N -0.269 5.269 7 C -0.115 4.115 8 C -0.052 4.052 9 C -0.080 4.080 10 N -0.238 5.238 11 C 0.067 3.933 12 C -0.555 4.555 13 H 0.084 0.916 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.199 1.199 20 H 0.079 0.921 21 H 0.062 0.938 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.095 0.905 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.032 0.968 30 H 0.038 0.962 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.030 0.970 34 H 0.055 0.945 35 H 0.006 0.994 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.054 -1.196 10.368 12.065 hybrid contribution 1.005 1.145 -0.955 1.798 sum 7.059 -0.052 9.413 11.766 Atomic orbital electron populations 1.22040 0.95269 1.02372 1.01107 1.20529 0.95044 0.94642 0.92316 0.95991 1.20636 0.94666 1.02359 0.96468 1.21711 0.96009 0.92910 0.95134 1.60346 1.33457 1.30446 1.02638 1.22334 0.91895 0.97950 0.99354 1.22518 0.95312 0.98916 0.88440 1.22023 0.89833 0.93405 1.02713 1.61623 1.01543 1.57021 1.03613 1.19809 0.92867 0.94268 0.86308 1.21312 1.04874 1.38250 0.91076 0.91560 1.24980 0.94936 0.95313 0.99172 1.69958 1.14256 1.43191 1.26026 0.86540 0.79570 0.78742 0.82809 1.20585 1.21350 1.19880 0.92075 0.93783 0.91646 0.92771 0.90506 0.95030 0.92376 0.92027 0.91865 0.96777 0.96201 0.90964 0.87871 0.96990 0.94538 0.99432 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.01 37.16 0.30 -2.45 16 2 C 0.08 1.57 2.20 -70.31 -0.15 1.42 16 3 H 0.02 0.43 7.38 -51.93 -0.38 0.04 16 4 C -0.10 -1.66 4.83 -29.33 -0.14 -1.80 16 5 C 0.07 1.08 5.42 -4.58 -0.02 1.06 16 6 N -0.54 -8.95 4.40 -242.56 -1.07 -10.02 16 7 C 0.03 0.43 9.29 60.07 0.56 0.99 16 8 C 0.08 1.34 5.75 -2.62 -0.02 1.33 16 9 C 0.05 1.03 4.68 -4.75 -0.02 1.01 16 10 N -0.51 -11.41 4.49 -232.60 -1.04 -12.45 16 11 C 0.19 5.03 3.62 -4.97 -0.02 5.01 16 12 C -0.52 -14.40 7.95 -34.44 -0.27 -14.67 16 13 H 0.07 1.81 6.29 -52.49 -0.33 1.48 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 16 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H 0.06 1.14 8.09 -51.93 -0.42 0.72 16 21 H 0.04 0.67 8.13 -51.93 -0.42 0.24 16 22 H 0.06 1.33 6.35 -51.93 -0.33 1.00 16 23 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 24 H 0.08 1.34 8.12 -51.93 -0.42 0.92 16 25 H 0.03 0.50 6.96 -51.93 -0.36 0.14 16 26 H 0.06 0.75 7.57 -51.93 -0.39 0.36 16 27 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 28 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.02 0.32 8.04 -51.93 -0.42 -0.10 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.10 2.34 5.15 -51.93 -0.27 2.08 16 33 H 0.01 0.24 6.54 -51.93 -0.34 -0.10 16 34 H 0.04 1.03 7.01 -51.93 -0.36 0.66 16 35 H -0.01 -0.34 7.62 -51.93 -0.40 -0.73 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 272.38 15.07 4.10 4.10 Total: -1.00 -29.39 272.38 -8.27 -37.66 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -6.09 Total: -3.44 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 0.11 Total: -6.57 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -1.38 Total: -48.27 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.39 -8.27 -37.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307024305.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.981 kcal (2) G-P(sol) polarization free energy of solvation -29.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds