Wall clock time and date at job start Mon Mar 30 2020 02:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 108.82528 * 2 1 4 4 C 1.54319 * 108.85771 * 241.49476 * 2 1 3 5 5 C 1.54313 * 111.72873 * 198.10602 * 4 2 1 6 6 N 1.44178 * 112.61336 * 318.92677 * 5 4 2 7 7 C 1.46892 * 111.00249 * 217.52552 * 6 5 4 8 8 C 1.48078 * 109.90224 * 94.34657 * 6 5 4 9 9 C 1.46090 * 112.16105 * 279.63757 * 8 6 5 10 10 N 1.44250 * 108.89007 * 118.47274 * 2 1 3 11 11 C 1.46899 * 110.95641 * 338.36483 * 10 2 1 12 12 C 1.50700 * 109.47141 * 299.49730 * 11 10 2 13 13 H 1.07998 * 120.00137 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00240 * 180.02562 * 12 11 10 15 15 N 1.31522 * 120.00120 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00319 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46992 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47253 * 120.00073 * 16 14 12 19 19 H 1.48506 * 109.47020 * 240.00100 * 16 14 12 20 20 H 1.08999 * 109.47072 * 187.52358 * 1 2 3 21 21 H 1.08997 * 109.47087 * 307.52118 * 1 2 3 22 22 H 1.08997 * 109.47405 * 67.52641 * 1 2 3 23 23 H 1.08998 * 109.02876 * 77.52389 * 4 2 1 24 24 H 1.09005 * 108.97035 * 318.64705 * 4 2 1 25 25 H 1.08994 * 108.85637 * 198.11023 * 5 4 2 26 26 H 1.09011 * 108.85397 * 79.72736 * 5 4 2 27 27 H 1.09007 * 109.47040 * 301.41214 * 7 6 5 28 28 H 1.09008 * 109.47281 * 61.40894 * 7 6 5 29 29 H 1.08995 * 109.47991 * 181.41406 * 7 6 5 30 30 H 1.08994 * 108.94329 * 158.94773 * 8 6 5 31 31 H 1.08999 * 108.87197 * 40.27816 * 8 6 5 32 32 H 1.09004 * 108.95054 * 181.36875 * 9 8 6 33 33 H 1.09006 * 108.94889 * 300.08723 * 9 8 6 34 34 H 1.08999 * 109.47443 * 59.49517 * 11 10 2 35 35 H 1.09004 * 109.47332 * 179.50063 * 11 10 2 36 36 H 0.96990 * 120.00272 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8817 1.0317 0.0000 4 6 2.0288 -0.6969 -1.2833 5 6 3.5028 -1.1363 -1.1588 6 7 4.3224 -0.1478 -0.5031 7 6 5.6567 -0.0813 -1.1136 8 6 4.4152 -0.4493 0.9437 9 6 3.2363 0.0041 1.6779 10 7 1.9970 -0.6507 1.1997 11 6 0.9606 -0.6399 2.2407 12 6 0.6060 0.7846 2.5818 13 1 1.1013 1.6003 2.0762 14 6 -0.3500 1.0465 3.5401 15 7 -0.9522 0.0532 4.1570 16 14 -0.7900 2.8121 3.9624 17 1 0.0244 3.7370 3.1337 18 1 -2.2316 3.0418 3.6899 19 1 -0.5122 3.0613 5.3998 20 1 -0.3633 -1.0188 0.1346 21 1 -0.3633 0.6259 0.8150 22 1 -0.3634 0.3928 -0.9496 23 1 1.9330 -0.0077 -2.1222 24 1 1.4110 -1.5748 -1.4728 25 1 3.9015 -1.3188 -2.1567 26 1 3.5468 -2.0645 -0.5889 27 1 6.1345 -1.0590 -1.0501 28 1 5.5635 0.2103 -2.1598 29 1 6.2625 0.6541 -0.5841 30 1 5.2974 0.0435 1.3520 31 1 4.5201 -1.5265 1.0734 32 1 3.3699 -0.2211 2.7360 33 1 3.1365 1.0827 1.5558 34 1 0.0736 -1.1576 1.8758 35 1 1.3350 -1.1443 3.1315 36 1 -1.6249 0.2375 4.8309 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307024306.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:03 Heat of formation + Delta-G solvation = 20.351845 kcal Electronic energy + Delta-G solvation = -15314.506488 eV Core-core repulsion = 13027.076084 eV Total energy + Delta-G solvation = -2287.430403 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.00999 -36.10652 -32.68435 -32.27767 -29.41635 -27.77441 -26.23617 -24.43556 -22.70428 -22.13405 -19.95227 -18.40173 -16.36964 -15.51945 -15.31330 -14.71014 -14.49853 -14.34863 -13.36546 -13.11127 -12.49800 -12.48200 -12.19917 -11.82480 -11.47764 -11.10763 -10.96445 -10.87722 -10.76130 -10.49144 -10.42276 -9.98949 -9.91346 -9.75806 -9.68864 -9.15098 -8.37966 -7.94346 -7.07891 -5.99611 -4.05191 3.27727 3.36452 3.40573 4.29163 4.42549 5.03978 5.28638 5.30616 5.42171 5.54327 5.67386 5.83197 5.87702 5.95101 6.04517 6.18343 6.22969 6.27508 6.51730 6.57936 6.62054 6.63339 6.81473 6.88499 7.14502 7.39530 7.43101 7.51802 7.60355 7.62207 7.96228 8.22656 8.38035 8.51809 9.03836 9.56902 11.04216 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043352 B = 0.009099 C = 0.008600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.720759 B = 3076.529457 C = 3254.907940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 H 0.039 0.961 4 C -0.099 4.099 5 C 0.069 3.931 6 N -0.539 5.539 7 C 0.030 3.970 8 C 0.065 3.935 9 C 0.064 3.936 10 N -0.534 5.534 11 C 0.182 3.818 12 C -0.536 4.536 13 H 0.058 0.942 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.885 3.115 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 H 0.048 0.952 21 H 0.105 0.895 22 H 0.026 0.974 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.018 0.982 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.025 0.975 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.577 -0.988 -8.375 12.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 H 0.057 0.943 4 C -0.138 4.138 5 C -0.060 4.060 6 N -0.263 5.263 7 C -0.119 4.119 8 C -0.063 4.063 9 C -0.064 4.064 10 N -0.258 5.258 11 C 0.057 3.943 12 C -0.575 4.575 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.713 3.287 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 H 0.067 0.933 21 H 0.123 0.877 22 H 0.045 0.955 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.323 -1.075 -8.408 11.880 hybrid contribution -0.122 1.045 0.592 1.207 sum 8.201 -0.031 -7.816 11.329 Atomic orbital electron populations 1.22559 0.95495 1.02843 1.01842 1.20959 0.94228 0.95436 0.89719 0.94323 1.22098 0.94240 0.99717 0.97780 1.21732 0.94208 0.93258 0.96831 1.61510 1.11781 1.49677 1.03347 1.22396 0.90290 0.99499 0.99706 1.21249 0.98578 0.99039 0.87421 1.20840 0.90346 0.97528 0.97692 1.62062 1.05636 1.52307 1.05753 1.19952 0.89889 0.95695 0.88784 1.21785 1.21433 0.93574 1.20749 0.92422 1.24969 0.96299 0.96755 0.95987 1.69951 1.26371 1.30666 1.25902 0.86649 0.78293 0.85537 0.78260 1.19784 1.20986 1.21042 0.93335 0.87651 0.95472 0.93121 0.92503 0.93461 0.93935 0.96295 0.91931 0.91843 0.92041 0.94475 0.91354 0.94213 0.94129 0.95659 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.60 7.68 37.16 0.29 -3.31 16 2 C 0.11 2.18 1.80 -68.44 -0.12 2.05 16 3 H 0.04 0.86 6.93 -51.93 -0.36 0.50 16 4 C -0.10 -1.69 5.77 -25.35 -0.15 -1.84 16 5 C 0.07 1.08 5.28 -4.59 -0.02 1.05 16 6 N -0.54 -8.53 4.52 -247.41 -1.12 -9.65 16 7 C 0.03 0.36 9.23 60.06 0.55 0.92 16 8 C 0.06 1.06 5.18 -6.45 -0.03 1.03 16 9 C 0.06 1.29 4.46 -6.44 -0.03 1.26 16 10 N -0.53 -11.59 4.48 -232.33 -1.04 -12.63 16 11 C 0.18 4.63 4.53 -4.98 -0.02 4.61 16 12 C -0.54 -14.38 5.45 -34.44 -0.19 -14.57 16 13 H 0.06 1.57 6.51 -52.49 -0.34 1.23 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 16 Si 0.88 21.29 29.54 -169.99 -5.02 16.27 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H 0.05 1.04 7.01 -51.93 -0.36 0.67 16 21 H 0.11 2.57 4.97 -51.93 -0.26 2.31 16 22 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.94 7.98 -51.93 -0.41 0.53 16 25 H 0.05 0.64 7.55 -51.93 -0.39 0.25 16 26 H 0.04 0.71 7.16 -51.92 -0.37 0.34 16 27 H 0.02 0.22 8.14 -51.92 -0.42 -0.21 16 28 H 0.06 0.71 8.08 -51.92 -0.42 0.29 16 29 H 0.06 0.73 7.96 -51.93 -0.41 0.31 16 30 H 0.06 0.89 7.74 -51.93 -0.40 0.49 16 31 H 0.04 0.62 7.36 -51.93 -0.38 0.23 16 32 H 0.07 1.40 7.77 -51.93 -0.40 1.00 16 33 H 0.04 0.86 6.68 -51.93 -0.35 0.51 16 34 H 0.04 1.10 6.03 -51.93 -0.31 0.79 16 35 H 0.03 0.70 8.01 -51.93 -0.42 0.28 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 268.43 15.07 4.05 4.05 Total: -1.00 -28.12 268.43 -8.22 -36.34 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.00 Total: -2.11 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 0.18 Total: -7.18 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -1.42 Total: -47.37 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.12 -8.22 -36.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307024306.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.696 kcal (2) G-P(sol) polarization free energy of solvation -28.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds