Wall clock time and date at job start Mon Mar 30 2020 02:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 108.82528 * 2 1 4 4 C 1.54319 * 108.85771 * 241.49476 * 2 1 3 5 5 C 1.54313 * 111.72873 * 198.10602 * 4 2 1 6 6 N 1.44178 * 112.61336 * 318.92677 * 5 4 2 7 7 C 1.46892 * 111.00249 * 217.52552 * 6 5 4 8 8 C 1.48078 * 109.90224 * 94.34657 * 6 5 4 9 9 C 1.46090 * 112.16105 * 279.63757 * 8 6 5 10 10 N 1.44250 * 108.89007 * 118.47274 * 2 1 3 11 11 C 1.46899 * 110.95641 * 338.36483 * 10 2 1 12 12 C 1.50700 * 109.47141 * 299.49730 * 11 10 2 13 13 H 1.07998 * 120.00137 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00240 * 180.02562 * 12 11 10 15 15 N 1.31522 * 120.00120 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00319 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46992 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47253 * 120.00073 * 16 14 12 19 19 H 1.48506 * 109.47020 * 240.00100 * 16 14 12 20 20 H 1.08999 * 109.47072 * 187.52358 * 1 2 3 21 21 H 1.08997 * 109.47087 * 307.52118 * 1 2 3 22 22 H 1.08997 * 109.47405 * 67.52641 * 1 2 3 23 23 H 1.08998 * 109.02876 * 77.52389 * 4 2 1 24 24 H 1.09005 * 108.97035 * 318.64705 * 4 2 1 25 25 H 1.08994 * 108.85637 * 198.11023 * 5 4 2 26 26 H 1.09011 * 108.85397 * 79.72736 * 5 4 2 27 27 H 1.09007 * 109.47040 * 301.41214 * 7 6 5 28 28 H 1.09008 * 109.47281 * 61.40894 * 7 6 5 29 29 H 1.08995 * 109.47991 * 181.41406 * 7 6 5 30 30 H 1.08994 * 108.94329 * 158.94773 * 8 6 5 31 31 H 1.08999 * 108.87197 * 40.27816 * 8 6 5 32 32 H 1.09004 * 108.95054 * 181.36875 * 9 8 6 33 33 H 1.09006 * 108.94889 * 300.08723 * 9 8 6 34 34 H 1.08999 * 109.47443 * 59.49517 * 11 10 2 35 35 H 1.09004 * 109.47332 * 179.50063 * 11 10 2 36 36 H 0.96990 * 120.00272 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8817 1.0317 0.0000 4 6 2.0288 -0.6969 -1.2833 5 6 3.5028 -1.1363 -1.1588 6 7 4.3224 -0.1478 -0.5031 7 6 5.6567 -0.0813 -1.1136 8 6 4.4152 -0.4493 0.9437 9 6 3.2363 0.0041 1.6779 10 7 1.9970 -0.6507 1.1997 11 6 0.9606 -0.6399 2.2407 12 6 0.6060 0.7846 2.5818 13 1 1.1013 1.6003 2.0762 14 6 -0.3500 1.0465 3.5401 15 7 -0.9522 0.0532 4.1570 16 14 -0.7900 2.8121 3.9624 17 1 0.0244 3.7370 3.1337 18 1 -2.2316 3.0418 3.6899 19 1 -0.5122 3.0613 5.3998 20 1 -0.3633 -1.0188 0.1346 21 1 -0.3633 0.6259 0.8150 22 1 -0.3634 0.3928 -0.9496 23 1 1.9330 -0.0077 -2.1222 24 1 1.4110 -1.5748 -1.4728 25 1 3.9015 -1.3188 -2.1567 26 1 3.5468 -2.0645 -0.5889 27 1 6.1345 -1.0590 -1.0501 28 1 5.5635 0.2103 -2.1598 29 1 6.2625 0.6541 -0.5841 30 1 5.2974 0.0435 1.3520 31 1 4.5201 -1.5265 1.0734 32 1 3.3699 -0.2211 2.7360 33 1 3.1365 1.0827 1.5558 34 1 0.0736 -1.1576 1.8758 35 1 1.3350 -1.1443 3.1315 36 1 -1.6249 0.2375 4.8309 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307024306.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:02 Heat of formation + Delta-G solvation = 0.688100 kcal Electronic energy + Delta-G solvation = -15315.359172 eV Core-core repulsion = 13027.076084 eV Total energy + Delta-G solvation = -2288.283087 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.54407 -37.60475 -34.63641 -33.89946 -30.95008 -29.37917 -28.03136 -25.82196 -24.49211 -23.70848 -21.38936 -20.11438 -18.40493 -17.01382 -16.91500 -16.32627 -16.15574 -15.79342 -14.83097 -14.72035 -14.18109 -13.91724 -13.76378 -13.29896 -13.02485 -12.86906 -12.73691 -12.46492 -12.37018 -12.19736 -11.92942 -11.77125 -11.66454 -11.52327 -11.38536 -10.93100 -10.53215 -9.14894 -8.93930 -8.10315 -6.25093 1.35761 1.38324 1.49196 2.39096 3.09666 3.12564 3.39270 4.08986 4.18599 4.36517 4.38997 4.48778 4.61070 4.62885 4.70259 4.77769 4.87161 4.97771 5.04435 5.06800 5.09470 5.18833 5.20400 5.24360 5.35249 5.46234 5.52654 5.69719 5.84482 6.17680 6.20247 6.39339 6.41520 6.73008 6.93483 7.40644 8.90826 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043352 B = 0.009099 C = 0.008600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.720759 B = 3076.529457 C = 3254.907940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 H 0.020 0.980 4 C -0.095 4.095 5 C 0.071 3.929 6 N -0.555 5.555 7 C 0.030 3.970 8 C 0.071 3.929 9 C 0.071 3.929 10 N -0.532 5.532 11 C 0.197 3.803 12 C -0.532 4.532 13 H 0.051 0.949 14 C 0.012 3.988 15 N -0.925 5.925 16 Si 0.949 3.051 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.280 1.280 20 H 0.039 0.961 21 H 0.070 0.930 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.031 0.969 27 H 0.030 0.970 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.020 0.980 34 H 0.020 0.980 35 H -0.003 1.003 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.834 -0.324 -9.917 13.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.002 4.002 3 H 0.038 0.962 4 C -0.134 4.134 5 C -0.058 4.058 6 N -0.280 5.280 7 C -0.117 4.117 8 C -0.057 4.057 9 C -0.058 4.058 10 N -0.256 5.256 11 C 0.071 3.929 12 C -0.571 4.571 13 H 0.069 0.931 14 C -0.187 4.187 15 N -0.566 5.566 16 Si 0.775 3.225 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.206 1.206 20 H 0.058 0.942 21 H 0.089 0.911 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.015 0.985 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.602 -0.407 -9.971 13.849 hybrid contribution -0.499 0.833 1.034 1.419 sum 9.103 0.426 -8.937 12.764 Atomic orbital electron populations 1.22396 0.96243 1.01564 1.01796 1.21025 0.93664 0.94863 0.90645 0.96195 1.22052 0.95558 0.99910 0.95837 1.21703 0.93314 0.92557 0.98238 1.61437 1.13978 1.49774 1.02770 1.22460 0.88437 1.00500 1.00308 1.21086 0.97279 0.99137 0.88179 1.20854 0.90938 0.96230 0.97752 1.62103 1.05251 1.52956 1.05258 1.19613 0.90039 0.94578 0.88699 1.21862 1.21065 0.93858 1.20364 0.93101 1.25719 0.96328 1.00645 0.96028 1.70060 1.27132 1.32706 1.26668 0.85631 0.78084 0.80746 0.78009 1.19391 1.20433 1.20559 0.94199 0.91135 0.92842 0.91449 0.92025 0.90584 0.95082 0.95139 0.90512 0.90963 0.89744 0.94415 0.92770 0.96127 0.96201 0.98500 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.90 7.68 71.98 0.55 -6.34 16 2 C 0.11 4.35 1.80 45.86 0.08 4.44 16 3 H 0.02 0.88 6.93 -2.39 -0.02 0.87 16 4 C -0.09 -3.02 5.77 31.49 0.18 -2.84 16 5 C 0.07 2.02 5.28 87.26 0.46 2.48 16 6 N -0.55 -16.07 4.52 -936.66 -4.23 -20.31 16 7 C 0.03 0.64 9.23 127.69 1.18 1.82 16 8 C 0.07 2.22 5.18 83.95 0.43 2.65 16 9 C 0.07 2.83 4.46 83.95 0.37 3.21 16 10 N -0.53 -23.40 4.48 -888.96 -3.98 -27.38 16 11 C 0.20 10.40 4.53 85.56 0.39 10.79 16 12 C -0.53 -29.28 5.45 25.60 0.14 -29.14 16 13 H 0.05 2.83 6.51 -2.91 -0.02 2.81 16 14 C 0.01 0.67 5.46 84.65 0.46 1.13 16 15 N -0.93 -54.92 13.29 21.45 0.28 -54.64 16 16 Si 0.95 44.19 29.54 68.60 2.03 46.21 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H 0.04 1.72 7.01 -2.39 -0.02 1.70 16 21 H 0.07 3.50 4.97 -2.39 -0.01 3.49 16 22 H 0.05 1.93 8.12 -2.39 -0.02 1.91 16 23 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.06 1.91 7.98 -2.38 -0.02 1.89 16 25 H 0.08 1.75 7.55 -2.39 -0.02 1.74 16 26 H 0.03 0.96 7.16 -2.38 -0.02 0.94 16 27 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.08 1.41 8.08 -2.38 -0.02 1.39 16 29 H 0.07 1.39 7.96 -2.39 -0.02 1.37 16 30 H 0.08 2.26 7.74 -2.39 -0.02 2.24 16 31 H 0.04 1.19 7.36 -2.39 -0.02 1.17 16 32 H 0.05 2.28 7.77 -2.39 -0.02 2.26 16 33 H 0.02 0.89 6.68 -2.38 -0.02 0.88 16 34 H 0.02 1.13 6.03 -2.39 -0.01 1.11 16 35 H 0.00 -0.18 8.01 -2.38 -0.02 -0.20 16 36 H 0.26 14.76 8.31 -92.72 -0.77 13.99 16 Total: -1.00 -60.85 268.43 -0.62 -61.47 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.03 Total: 6.45 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 4.26 Total: -11.81 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -7.93 Total: -102.32 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -60.85 -0.62 -61.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307024306.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.157 kcal (2) G-P(sol) polarization free energy of solvation -60.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds