Wall clock time and date at job start Mon Mar 30 2020 02:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47106 * 2 1 4 4 C 1.50694 * 109.47355 * 120.00049 * 2 1 3 5 5 H 1.08000 * 120.00563 * 120.00152 * 4 2 1 6 6 C 1.37885 * 119.99902 * 299.99988 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48504 * 109.47032 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46816 * 120.00323 * 8 6 4 11 11 H 1.48495 * 109.46630 * 240.00111 * 8 6 4 12 12 N 1.46903 * 109.47096 * 240.00107 * 2 1 3 13 13 C 1.46956 * 111.00055 * 306.04376 * 12 2 1 14 14 C 1.53048 * 109.36603 * 176.81109 * 13 12 2 15 15 N 1.46960 * 109.36258 * 58.40316 * 14 13 12 16 16 C 1.46960 * 110.87608 * 300.67719 * 15 14 13 17 17 H 1.09009 * 109.48654 * 179.29259 * 16 15 14 18 18 C 1.52998 * 109.49301 * 299.32917 * 16 15 14 19 19 C 1.46955 * 110.99925 * 182.24275 * 12 2 1 20 20 H 1.09007 * 109.48919 * 63.22245 * 19 12 2 21 21 C 1.52997 * 109.49134 * 303.15790 * 19 12 2 22 22 H 1.08995 * 109.47131 * 299.99885 * 1 2 3 23 23 H 1.08998 * 109.47544 * 60.00332 * 1 2 3 24 24 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 25 25 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.48572 * 296.77853 * 13 12 2 27 27 H 1.08998 * 109.48695 * 56.82161 * 13 12 2 28 28 H 1.09001 * 109.49082 * 178.36446 * 14 13 12 29 29 H 1.08996 * 109.49070 * 298.41168 * 14 13 12 30 30 H 1.00899 * 111.00003 * 176.81183 * 15 14 13 31 31 H 1.09008 * 109.46455 * 60.00461 * 18 16 15 32 32 H 1.08994 * 109.47265 * 180.02562 * 18 16 15 33 33 H 1.08995 * 109.47044 * 300.00521 * 18 16 15 34 34 H 1.08996 * 109.47362 * 59.99782 * 21 19 12 35 35 H 1.09000 * 109.47574 * 180.02562 * 21 19 12 36 36 H 1.09000 * 109.46836 * 299.99665 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3157 -1.1244 4.0079 9 1 3.1368 -2.2939 3.6037 10 1 3.1434 -0.1955 4.8187 11 1 1.1574 -1.5870 4.8137 12 7 2.0197 -0.6925 -1.1995 13 6 1.4341 -2.0360 -1.3079 14 6 1.9059 -2.6918 -2.6077 15 7 3.3740 -2.7582 -2.6151 16 6 3.9595 -1.4146 -2.5067 17 1 5.0469 -1.4911 -2.5017 18 6 3.5132 -0.5656 -3.6987 19 6 3.4877 -0.7588 -1.2069 20 1 3.8294 -1.3493 -0.3567 21 6 4.0631 0.6556 -1.1106 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 0.7088 1.1613 3.4844 26 1 1.7525 -2.6409 -0.4589 27 1 0.3468 -1.9595 -1.3126 28 1 1.4961 -3.6995 -2.6763 29 1 1.5640 -2.1016 -3.4579 30 1 3.7103 -3.2338 -3.4389 31 1 2.4259 -0.4886 -3.7030 32 1 3.9480 0.4307 -3.6183 33 1 3.8480 -1.0341 -4.6241 34 1 3.7253 1.1232 -0.1858 35 1 5.1519 0.6062 -1.1166 36 1 3.7219 1.2453 -1.9615 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307027420.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:30 Heat of formation + Delta-G solvation = 8.652966 kcal Electronic energy + Delta-G solvation = -15566.774380 eV Core-core repulsion = 13278.836675 eV Total energy + Delta-G solvation = -2287.937705 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.08643 -35.13528 -32.50307 -32.12164 -28.94299 -27.54034 -26.20441 -25.04823 -23.47826 -21.35202 -19.75320 -18.01934 -16.23463 -15.80792 -14.76803 -14.71594 -14.36970 -14.01431 -13.32722 -13.06702 -12.64364 -12.06588 -11.80147 -11.52298 -11.32842 -11.14283 -11.04764 -10.90037 -10.70267 -10.60626 -10.37399 -10.11008 -9.82282 -9.62641 -9.41115 -9.06245 -8.33452 -8.03517 -7.02678 -5.94325 -4.06659 3.28537 3.37213 3.42095 4.44054 4.63229 5.07256 5.29998 5.38307 5.59670 5.70282 5.78633 5.95177 6.03741 6.06576 6.14929 6.27454 6.35530 6.46694 6.63211 6.77218 6.87601 6.96172 6.99709 7.04602 7.09452 7.23460 7.45673 7.66677 7.73604 7.76561 8.05851 8.22269 8.42498 8.50352 9.04217 9.60860 11.05083 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037037 B = 0.010509 C = 0.010382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.817170 B = 2663.783451 C = 2696.368883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.204 3.796 3 H 0.044 0.956 4 C -0.535 4.535 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.885 3.115 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.285 1.285 12 N -0.531 5.531 13 C 0.060 3.940 14 C 0.056 3.944 15 N -0.685 5.685 16 C 0.087 3.913 17 H 0.071 0.929 18 C -0.175 4.175 19 C 0.097 3.903 20 H 0.053 0.947 21 C -0.142 4.142 22 H 0.083 0.917 23 H 0.013 0.987 24 H 0.027 0.973 25 H 0.259 0.741 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.330 0.670 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.337 -3.284 -9.204 10.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.098 3.902 3 H 0.062 0.938 4 C -0.575 4.575 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.527 5.527 8 Si 0.713 3.287 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.211 1.211 12 N -0.256 5.256 13 C -0.069 4.069 14 C -0.073 4.073 15 N -0.314 5.314 16 C -0.023 4.023 17 H 0.089 0.911 18 C -0.234 4.234 19 C -0.012 4.012 20 H 0.071 0.929 21 C -0.199 4.199 22 H 0.102 0.898 23 H 0.032 0.968 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.146 0.854 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.141 -3.029 -8.791 9.814 hybrid contribution 0.380 -0.623 0.785 1.072 sum 3.520 -3.652 -8.006 9.477 Atomic orbital electron populations 1.21864 0.98128 0.99051 1.00208 1.19312 0.91908 0.94509 0.84449 0.93808 1.21768 1.31338 1.12726 0.91629 0.92479 1.24902 0.94922 0.94872 0.98809 1.69893 1.36699 1.22949 1.23196 0.86648 0.78652 0.79885 0.83504 1.19895 1.21093 1.21112 1.62673 1.04979 1.16144 1.41809 1.21980 0.98990 0.90791 0.95124 1.22087 0.87673 0.99147 0.98419 1.60702 1.07569 1.18553 1.44623 1.21700 0.97682 0.87422 0.95505 0.91051 1.22419 1.03403 1.00658 0.96947 1.21344 0.89701 0.95535 0.94652 0.92932 1.21849 0.98535 0.96717 1.02834 0.89808 0.96825 0.95415 0.93083 0.93920 0.90995 0.91779 0.94817 0.85395 0.91024 0.92216 0.94609 0.90916 0.93908 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.54 37.16 0.32 -2.94 16 2 C 0.20 5.05 1.93 -68.87 -0.13 4.92 16 3 H 0.04 1.19 6.38 -51.93 -0.33 0.85 16 4 C -0.54 -14.38 7.11 -34.44 -0.25 -14.63 16 5 H 0.06 1.59 5.80 -52.49 -0.30 1.28 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 7 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 8 Si 0.88 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 N -0.53 -11.26 3.89 -219.95 -0.85 -12.12 16 13 C 0.06 1.20 4.89 -3.77 -0.02 1.18 16 14 C 0.06 0.91 6.34 -3.77 -0.02 0.89 16 15 N -0.69 -10.86 6.70 -106.58 -0.71 -11.58 16 16 C 0.09 1.42 3.24 -67.66 -0.22 1.20 16 17 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 18 C -0.18 -2.59 8.44 37.16 0.31 -2.28 16 19 C 0.10 1.92 1.85 -67.66 -0.13 1.80 16 20 H 0.05 1.21 6.45 -51.93 -0.33 0.88 16 21 C -0.14 -2.64 8.47 37.16 0.31 -2.32 16 22 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.03 0.64 6.26 -51.92 -0.32 0.32 16 25 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.04 0.96 6.95 -51.93 -0.36 0.60 16 27 H 0.07 1.43 6.03 -51.93 -0.31 1.12 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.03 0.54 6.35 -51.93 -0.33 0.21 16 30 H 0.33 4.34 8.89 -39.29 -0.35 3.99 16 31 H 0.07 1.18 5.95 -51.92 -0.31 0.87 16 32 H 0.06 0.86 6.41 -51.93 -0.33 0.53 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 1.56 6.39 -51.93 -0.33 1.23 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.92 6.40 -51.93 -0.33 0.59 16 LS Contribution 262.21 15.07 3.95 3.95 Total: -1.00 -27.60 262.21 -7.44 -35.05 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.52 Total: 3.18 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.94 Total: -48.14 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.60 -7.44 -35.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307027420.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.699 kcal (2) G-P(sol) polarization free energy of solvation -27.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds