Wall clock time and date at job start Mon Mar 30 2020 02:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47106 * 2 1 4 4 C 1.50694 * 109.47355 * 120.00049 * 2 1 3 5 5 H 1.08000 * 120.00563 * 120.00152 * 4 2 1 6 6 C 1.37885 * 119.99902 * 299.99988 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48504 * 109.47032 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46816 * 120.00323 * 8 6 4 11 11 H 1.48495 * 109.46630 * 240.00111 * 8 6 4 12 12 N 1.46903 * 109.47096 * 240.00107 * 2 1 3 13 13 C 1.46956 * 111.00055 * 306.04376 * 12 2 1 14 14 C 1.53048 * 109.36603 * 176.81109 * 13 12 2 15 15 N 1.46960 * 109.36258 * 58.40316 * 14 13 12 16 16 C 1.46960 * 110.87608 * 300.67719 * 15 14 13 17 17 H 1.09009 * 109.48654 * 179.29259 * 16 15 14 18 18 C 1.52998 * 109.49301 * 299.32917 * 16 15 14 19 19 C 1.46955 * 110.99925 * 182.24275 * 12 2 1 20 20 H 1.09007 * 109.48919 * 63.22245 * 19 12 2 21 21 C 1.52997 * 109.49134 * 303.15790 * 19 12 2 22 22 H 1.08995 * 109.47131 * 299.99885 * 1 2 3 23 23 H 1.08998 * 109.47544 * 60.00332 * 1 2 3 24 24 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 25 25 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.48572 * 296.77853 * 13 12 2 27 27 H 1.08998 * 109.48695 * 56.82161 * 13 12 2 28 28 H 1.09001 * 109.49082 * 178.36446 * 14 13 12 29 29 H 1.08996 * 109.49070 * 298.41168 * 14 13 12 30 30 H 1.00899 * 111.00003 * 176.81183 * 15 14 13 31 31 H 1.09008 * 109.46455 * 60.00461 * 18 16 15 32 32 H 1.08994 * 109.47265 * 180.02562 * 18 16 15 33 33 H 1.08995 * 109.47044 * 300.00521 * 18 16 15 34 34 H 1.08996 * 109.47362 * 59.99782 * 21 19 12 35 35 H 1.09000 * 109.47574 * 180.02562 * 21 19 12 36 36 H 1.09000 * 109.46836 * 299.99665 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3157 -1.1244 4.0079 9 1 3.1368 -2.2939 3.6037 10 1 3.1434 -0.1955 4.8187 11 1 1.1574 -1.5870 4.8137 12 7 2.0197 -0.6925 -1.1995 13 6 1.4341 -2.0360 -1.3079 14 6 1.9059 -2.6918 -2.6077 15 7 3.3740 -2.7582 -2.6151 16 6 3.9595 -1.4146 -2.5067 17 1 5.0469 -1.4911 -2.5017 18 6 3.5132 -0.5656 -3.6987 19 6 3.4877 -0.7588 -1.2069 20 1 3.8294 -1.3493 -0.3567 21 6 4.0631 0.6556 -1.1106 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 0.7088 1.1613 3.4844 26 1 1.7525 -2.6409 -0.4589 27 1 0.3468 -1.9595 -1.3126 28 1 1.4961 -3.6995 -2.6763 29 1 1.5640 -2.1016 -3.4579 30 1 3.7103 -3.2338 -3.4389 31 1 2.4259 -0.4886 -3.7030 32 1 3.9480 0.4307 -3.6183 33 1 3.8480 -1.0341 -4.6241 34 1 3.7253 1.1232 -0.1858 35 1 5.1519 0.6062 -1.1166 36 1 3.7219 1.2453 -1.9615 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307027420.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:30 Heat of formation + Delta-G solvation = -11.052656 kcal Electronic energy + Delta-G solvation = -15567.628880 eV Core-core repulsion = 13278.836675 eV Total energy + Delta-G solvation = -2288.792205 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.62275 -36.83328 -34.23343 -33.81766 -30.75806 -28.91240 -27.76729 -27.09735 -25.04090 -22.85351 -21.58811 -19.67730 -17.85138 -17.61381 -16.62517 -16.12776 -16.01127 -15.52154 -15.10369 -14.80002 -14.13773 -13.60045 -13.39805 -13.23207 -12.99741 -12.89252 -12.68167 -12.50826 -12.35545 -12.29629 -12.09984 -12.01727 -11.49824 -11.44720 -11.11181 -10.89814 -10.43143 -9.30432 -8.85404 -8.02389 -6.23728 1.33643 1.37039 1.47048 2.39929 3.16041 3.39039 3.42819 4.01143 4.27811 4.32102 4.44272 4.59417 4.61830 4.66337 4.75713 4.87866 4.91397 4.99372 5.06974 5.09747 5.19714 5.22542 5.27012 5.42412 5.48392 5.54195 5.61302 5.74053 6.02988 6.14642 6.23559 6.40746 6.67785 6.72105 6.98114 7.46622 8.92668 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037037 B = 0.010509 C = 0.010382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.817170 B = 2663.783451 C = 2696.368883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.209 3.791 3 H 0.017 0.983 4 C -0.539 4.539 5 H 0.042 0.958 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.942 3.058 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.524 5.524 13 C 0.060 3.940 14 C 0.066 3.934 15 N -0.694 5.694 16 C 0.093 3.907 17 H 0.088 0.912 18 C -0.166 4.166 19 C 0.094 3.906 20 H 0.014 0.986 21 C -0.134 4.134 22 H 0.058 0.942 23 H 0.028 0.972 24 H 0.030 0.970 25 H 0.261 0.739 26 H 0.010 0.990 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.351 0.649 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.034 0.966 35 H 0.067 0.933 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.117 -4.160 -10.769 12.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.102 3.898 3 H 0.035 0.965 4 C -0.578 4.578 5 H 0.060 0.940 6 C -0.178 4.178 7 N -0.552 5.552 8 Si 0.769 3.231 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.206 1.206 12 N -0.249 5.249 13 C -0.069 4.069 14 C -0.063 4.063 15 N -0.326 5.326 16 C -0.018 4.018 17 H 0.106 0.894 18 C -0.225 4.225 19 C -0.016 4.016 20 H 0.032 0.968 21 C -0.191 4.191 22 H 0.077 0.923 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.028 0.972 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.170 0.830 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.930 -3.917 -10.377 11.767 hybrid contribution 0.157 -0.357 1.254 1.314 sum 4.087 -4.274 -9.123 10.872 Atomic orbital electron populations 1.21692 0.97789 0.98978 0.99673 1.19094 0.92101 0.93318 0.85332 0.96532 1.21884 1.30916 1.12171 0.92822 0.93992 1.25558 0.95282 0.95607 1.01340 1.69998 1.37508 1.23916 1.23769 0.85749 0.78178 0.78727 0.80430 1.20159 1.20549 1.20576 1.62651 1.06091 1.16726 1.39398 1.22017 0.98876 0.89742 0.96278 1.21970 0.88133 1.00077 0.96151 1.60604 1.07240 1.18511 1.46204 1.21614 0.98536 0.87730 0.93888 0.89358 1.22313 1.02211 1.00749 0.97226 1.21424 0.88607 0.95925 0.95603 0.96837 1.21763 1.00054 0.95962 1.01363 0.92301 0.95272 0.95141 0.92985 0.97209 0.91279 0.89580 0.93658 0.82951 0.92717 0.91906 0.91847 0.94641 0.91403 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.06 8.54 71.98 0.61 -5.44 16 2 C 0.21 10.58 1.93 44.17 0.09 10.66 16 3 H 0.02 0.94 6.38 -2.39 -0.02 0.93 16 4 C -0.54 -29.77 7.11 25.60 0.18 -29.59 16 5 H 0.04 2.41 5.80 -2.91 -0.02 2.40 16 6 C 0.02 1.20 5.30 84.66 0.45 1.65 16 7 N -0.91 -52.56 11.32 21.45 0.24 -52.31 16 8 Si 0.94 44.70 29.54 68.60 2.03 46.73 16 9 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 N -0.52 -22.26 3.89 -849.79 -3.30 -25.57 16 13 C 0.06 2.36 4.89 86.31 0.42 2.79 16 14 C 0.07 1.99 6.34 86.31 0.55 2.54 16 15 N -0.69 -20.06 6.70 -491.12 -3.29 -23.35 16 16 C 0.09 2.78 3.24 44.92 0.15 2.93 16 17 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 18 C -0.17 -4.34 8.44 71.98 0.61 -3.74 16 19 C 0.09 3.68 1.85 44.92 0.08 3.76 16 20 H 0.01 0.64 6.45 -2.38 -0.02 0.62 16 21 C -0.13 -4.93 8.47 71.98 0.61 -4.32 16 22 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 23 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.03 1.43 6.26 -2.38 -0.01 1.41 16 25 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 26 H 0.01 0.44 6.95 -2.39 -0.02 0.43 16 27 H 0.07 2.73 6.03 -2.39 -0.01 2.71 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.05 1.29 6.35 -2.39 -0.02 1.28 16 30 H 0.35 7.84 8.89 -89.69 -0.80 7.05 16 31 H 0.05 1.63 5.95 -2.38 -0.01 1.62 16 32 H 0.06 1.60 6.41 -2.39 -0.02 1.59 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.03 1.55 6.39 -2.39 -0.02 1.54 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.06 2.22 6.40 -2.39 -0.02 2.20 16 Total: -1.00 -60.15 262.21 -0.31 -60.45 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.27 Total: 12.81 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 3.75 Total: -18.76 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -6.35 Total: -101.23 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -60.15 -0.31 -60.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307027420.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.401 kcal (2) G-P(sol) polarization free energy of solvation -60.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds