Wall clock time and date at job start Mon Mar 30 2020 02:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47005 * 2 1 4 4 C 1.50699 * 109.47146 * 240.00153 * 2 1 3 5 5 H 1.08002 * 120.00186 * 245.43438 * 4 2 1 6 6 C 1.37873 * 119.99979 * 65.44152 * 4 2 1 7 7 N 1.31514 * 119.99816 * 355.15680 * 6 4 2 8 8 Si 1.86801 * 120.00118 * 175.16333 * 6 4 2 9 9 H 1.48504 * 109.47416 * 94.99629 * 8 6 4 10 10 H 1.48504 * 109.47054 * 214.99751 * 8 6 4 11 11 H 1.48499 * 109.47047 * 334.99472 * 8 6 4 12 12 N 1.46906 * 109.47140 * 120.00225 * 2 1 3 13 13 C 1.40012 * 110.99869 * 289.94388 * 12 2 1 14 14 C 1.54206 * 112.07390 * 188.09718 * 13 12 2 15 15 N 1.44571 * 108.86590 * 281.20760 * 14 13 12 16 16 C 1.48066 * 113.86343 * 94.22205 * 15 14 13 17 17 C 1.53697 * 112.46457 * 318.31626 * 16 15 14 18 18 H 1.09002 * 108.88589 * 79.18406 * 17 16 15 19 19 C 1.52999 * 108.95812 * 197.88235 * 17 16 15 20 20 C 1.47903 * 110.99974 * 57.92531 * 12 2 1 21 21 H 1.09007 * 109.47261 * 184.93033 * 1 2 3 22 22 H 1.09007 * 109.47334 * 304.92282 * 1 2 3 23 23 H 1.09001 * 109.47286 * 64.92764 * 1 2 3 24 24 H 0.97010 * 120.00002 * 179.97438 * 7 6 4 25 25 H 1.09003 * 108.96253 * 308.77120 * 13 12 2 26 26 H 1.09006 * 108.96064 * 67.43196 * 13 12 2 27 27 H 1.09002 * 109.56737 * 41.02279 * 14 13 12 28 28 H 1.08998 * 109.57532 * 161.38583 * 14 13 12 29 29 H 1.00900 * 111.00219 * 220.34622 * 15 14 13 30 30 H 1.09000 * 108.88269 * 197.54828 * 16 15 14 31 31 H 1.09000 * 108.80499 * 79.03545 * 16 15 14 32 32 H 1.08998 * 109.47601 * 182.58381 * 19 17 16 33 33 H 1.09006 * 109.47176 * 302.58983 * 19 17 16 34 34 H 1.09007 * 109.47000 * 62.58132 * 19 17 16 35 35 H 1.09004 * 109.63122 * 273.46467 * 20 12 2 36 36 H 1.09002 * 109.63458 * 34.05696 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5789 -1.6368 -1.1339 6 6 1.7942 -0.1775 -2.4796 7 7 1.0482 0.8984 -2.6042 8 14 2.5310 -0.9838 -3.9950 9 1 1.5394 -1.9139 -4.5925 10 1 2.8897 0.0615 -4.9869 11 1 3.7497 -1.7400 -3.6102 12 7 2.0196 -0.6926 1.1995 13 6 1.7665 0.0607 2.3522 14 6 2.4435 -0.5431 3.5993 15 7 1.6510 -1.6579 4.0677 16 6 2.0964 -2.9703 3.5467 17 6 2.4730 -2.9139 2.0576 18 1 3.4716 -2.4875 1.9622 19 6 2.4844 -4.3361 1.4936 20 6 1.5050 -2.0779 1.2588 21 1 -0.3634 -1.0239 0.0883 22 1 -0.3634 0.5883 0.8426 23 1 -0.3634 0.4355 -0.9308 24 1 0.8810 1.2736 -3.4830 25 1 2.1395 1.0739 2.2023 26 1 0.6901 0.1024 2.5188 27 1 3.4438 -0.8897 3.3398 28 1 2.5086 0.2130 4.3816 29 1 1.6002 -1.6673 5.0754 30 1 1.2923 -3.6941 3.6800 31 1 2.9645 -3.2989 4.1180 32 1 2.7952 -4.3103 0.4492 33 1 3.1820 -4.9482 2.0654 34 1 1.4839 -4.7631 1.5645 35 1 0.5284 -2.0854 1.7430 36 1 1.4196 -2.4805 0.2495 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307033244.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:51 Heat of formation + Delta-G solvation = 5.768790 kcal Electronic energy + Delta-G solvation = -15282.335301 eV Core-core repulsion = 12994.272529 eV Total energy + Delta-G solvation = -2288.062772 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.90588 -35.44810 -33.40647 -32.50936 -29.23085 -27.13623 -25.46135 -25.00872 -24.13186 -21.09875 -19.18612 -18.99549 -16.18721 -16.12247 -15.24531 -14.75887 -14.56537 -13.76475 -13.54037 -12.86971 -12.63105 -12.32551 -12.16222 -11.77855 -11.51022 -11.17674 -10.90913 -10.77935 -10.66360 -10.43312 -10.33533 -10.24260 -10.14918 -9.72216 -9.53123 -8.77746 -8.33329 -8.01417 -6.89207 -5.95081 -3.97402 3.33723 3.40854 3.45433 4.45366 4.48157 5.02202 5.27718 5.37057 5.39149 5.61314 5.66704 5.78524 5.88391 5.96784 6.05237 6.16311 6.31832 6.42301 6.56408 6.58547 6.70438 6.79720 6.90423 6.99290 7.03199 7.27221 7.41593 7.64574 7.70793 7.82267 7.94829 8.32600 8.52645 8.89170 9.09087 9.67033 11.12449 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037034 B = 0.010008 C = 0.008514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.870486 B = 2796.958245 C = 3287.953727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.216 3.784 3 H 0.037 0.963 4 C -0.495 4.495 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.893 3.107 9 H -0.284 1.284 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.550 5.550 13 C 0.080 3.920 14 C 0.066 3.934 15 N -0.703 5.703 16 C 0.074 3.926 17 C -0.095 4.095 18 H 0.075 0.925 19 C -0.141 4.141 20 C 0.084 3.916 21 H 0.027 0.973 22 H 0.007 0.993 23 H 0.082 0.918 24 H 0.259 0.741 25 H 0.058 0.942 26 H 0.020 0.980 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.335 0.665 30 H 0.064 0.936 31 H 0.020 0.980 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.031 0.969 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.725 -5.803 10.229 11.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.110 3.890 3 H 0.055 0.945 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.721 3.279 9 H -0.210 1.210 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.273 5.273 13 C -0.051 4.051 14 C -0.064 4.064 15 N -0.334 5.334 16 C -0.055 4.055 17 C -0.114 4.114 18 H 0.094 0.906 19 C -0.199 4.199 20 C -0.043 4.043 21 H 0.046 0.954 22 H 0.026 0.974 23 H 0.101 0.899 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.153 0.847 30 H 0.082 0.918 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.714 -5.618 9.572 11.230 hybrid contribution 0.254 -0.373 -0.211 0.498 sum 1.968 -5.991 9.361 11.287 Atomic orbital electron populations 1.22366 1.00950 0.98453 1.00773 1.19256 0.89570 0.94268 0.85873 0.94468 1.21137 1.34033 1.08304 0.89907 0.92041 1.24932 0.95316 0.95242 0.98903 1.69921 1.37937 1.22155 1.23394 0.86568 0.79537 0.78955 0.82838 1.20990 1.21326 1.19855 1.59443 1.62360 1.02353 1.03189 1.20865 0.97652 0.96261 0.90316 1.21829 0.95492 0.92035 0.97077 1.59018 1.57759 1.03240 1.13423 1.22274 0.97554 0.90050 0.95581 1.21105 1.01534 0.95857 0.92904 0.90643 1.21816 1.01013 0.95890 1.01221 1.21612 0.94385 0.88807 0.99511 0.95411 0.97369 0.89929 0.93129 0.92377 0.96238 0.93634 0.92298 0.84721 0.91775 0.96202 0.92018 0.93592 0.93019 0.95086 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.53 37.15 0.32 -3.83 16 2 C 0.22 5.54 2.22 -68.86 -0.15 5.38 16 3 H 0.04 1.05 7.85 -51.93 -0.41 0.64 16 4 C -0.50 -13.61 7.64 -34.44 -0.26 -13.88 16 5 H 0.06 1.69 6.93 -52.49 -0.36 1.33 16 6 C 0.06 1.58 5.35 -17.82 -0.10 1.48 16 7 N -0.89 -25.80 11.52 55.43 0.64 -25.16 16 8 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.55 -12.09 4.02 -233.14 -0.94 -13.03 16 13 C 0.08 1.56 4.74 -6.75 -0.03 1.53 16 14 C 0.07 1.03 6.19 -4.44 -0.03 1.01 16 15 N -0.70 -10.32 6.12 -113.49 -0.69 -11.01 16 16 C 0.07 1.06 5.87 -2.82 -0.02 1.04 16 17 C -0.09 -1.57 2.25 -91.36 -0.21 -1.78 16 18 H 0.08 1.37 7.22 -51.93 -0.38 1.00 16 19 C -0.14 -2.03 8.81 37.16 0.33 -1.70 16 20 C 0.08 1.70 3.23 -4.38 -0.01 1.69 16 21 H 0.03 0.66 6.72 -51.93 -0.35 0.31 16 22 H 0.01 0.17 7.04 -51.93 -0.37 -0.19 16 23 H 0.08 2.26 6.23 -51.93 -0.32 1.94 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 25 H 0.06 1.14 7.82 -51.93 -0.41 0.73 16 26 H 0.02 0.41 6.82 -51.93 -0.35 0.05 16 27 H 0.05 0.75 6.93 -51.93 -0.36 0.39 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.34 4.00 8.89 -39.29 -0.35 3.65 16 30 H 0.06 0.87 7.97 -51.93 -0.41 0.46 16 31 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 35 H 0.03 0.65 7.19 -51.93 -0.37 0.27 16 36 H 0.08 1.85 5.77 -51.93 -0.30 1.55 16 LS Contribution 269.71 15.07 4.06 4.06 Total: -1.00 -28.54 269.71 -8.10 -36.63 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.99 Total: 1.07 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -0.16 Total: -9.05 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.99 Total: -49.20 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.54 -8.10 -36.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307033244.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.404 kcal (2) G-P(sol) polarization free energy of solvation -28.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds