Wall clock time and date at job start Mon Mar 30 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47006 * 2 1 4 4 C 1.50697 * 109.47351 * 119.99990 * 2 1 3 5 5 H 1.08004 * 120.00108 * 119.99728 * 4 2 1 6 6 C 1.37883 * 120.00090 * 300.00427 * 4 2 1 7 7 N 1.31517 * 120.00006 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99977 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46782 * 90.00015 * 8 6 4 10 10 H 1.48489 * 109.47392 * 210.00359 * 8 6 4 11 11 H 1.48504 * 109.46836 * 330.00317 * 8 6 4 12 12 N 1.46901 * 109.47318 * 240.00013 * 2 1 3 13 13 C 1.48203 * 110.99615 * 70.94473 * 12 2 1 14 14 C 1.53937 * 112.77079 * 191.67825 * 13 12 2 15 15 N 1.44262 * 112.54542 * 318.38706 * 14 13 12 16 16 C 1.48098 * 109.97490 * 93.91019 * 15 14 13 17 17 C 1.46136 * 112.19962 * 279.69503 * 16 15 14 18 18 H 1.09007 * 108.99619 * 300.32503 * 17 16 15 19 19 C 1.52995 * 108.99685 * 181.48327 * 17 16 15 20 20 C 1.44309 * 111.04007 * 302.76685 * 12 2 1 21 21 H 1.09004 * 109.47178 * 185.94584 * 1 2 3 22 22 H 1.08998 * 109.47250 * 305.94564 * 1 2 3 23 23 H 1.09004 * 109.47093 * 65.94570 * 1 2 3 24 24 H 0.96998 * 119.99724 * 179.97438 * 7 6 4 25 25 H 1.08994 * 108.82202 * 70.83153 * 13 12 2 26 26 H 1.08998 * 108.74048 * 312.46771 * 13 12 2 27 27 H 1.08996 * 108.86554 * 197.59377 * 14 13 12 28 28 H 1.09000 * 108.86391 * 79.17257 * 14 13 12 29 29 H 1.00899 * 110.99410 * 217.14003 * 15 14 13 30 30 H 1.08996 * 108.93461 * 158.99850 * 16 15 14 31 31 H 1.08996 * 108.93473 * 40.39594 * 16 15 14 32 32 H 1.08999 * 109.47201 * 58.85219 * 19 17 16 33 33 H 1.08997 * 109.47415 * 298.84722 * 19 17 16 34 34 H 1.08996 * 109.47203 * 178.84463 * 19 17 16 35 35 H 1.09005 * 109.68882 * 100.14671 * 20 12 2 36 36 H 1.08994 * 109.56416 * 339.62196 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 2.1373 -0.8597 3.5566 8 14 0.6258 1.2797 2.6542 9 1 -0.8021 0.8742 2.6994 10 1 0.9770 1.9953 3.9070 11 1 0.8490 2.1772 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 1.7708 0.1145 -2.4173 14 6 2.0007 -0.6799 -3.7157 15 7 3.1748 -1.5157 -3.6522 16 6 2.8009 -2.8811 -3.2170 17 6 2.6274 -2.9708 -1.7687 18 1 3.5625 -2.6943 -1.2815 19 6 2.2803 -4.4138 -1.3972 20 6 1.5051 -2.0391 -1.2666 21 1 -0.3634 -1.0222 0.1065 22 1 -0.3633 0.6032 0.8319 23 1 -0.3633 0.4189 -0.9385 24 1 1.9032 -0.5281 4.4375 25 1 2.4374 0.9768 -2.4100 26 1 0.7397 0.4675 -2.3989 27 1 2.1113 0.0212 -4.5429 28 1 1.1302 -1.3086 -3.9030 29 1 3.6516 -1.5374 -4.5412 30 1 3.5824 -3.5764 -3.5233 31 1 1.8674 -3.1641 -3.7033 32 1 3.0786 -5.0769 -1.7304 33 1 1.3458 -4.6987 -1.8805 34 1 2.1692 -4.4939 -0.3158 35 1 0.6627 -2.0762 -1.9573 36 1 1.1826 -2.3564 -0.2751 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307033245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:54 Heat of formation + Delta-G solvation = 16.901790 kcal Electronic energy + Delta-G solvation = -15345.900500 eV Core-core repulsion = 13058.320490 eV Total energy + Delta-G solvation = -2287.580009 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.94207 -35.71175 -33.57474 -32.35714 -29.87689 -27.54990 -25.34885 -25.06316 -24.32642 -20.78884 -19.79079 -18.71131 -16.80039 -16.22893 -15.22644 -14.94455 -14.27116 -14.10879 -13.53502 -13.05692 -12.85715 -12.55180 -12.26135 -12.08469 -11.70586 -11.62606 -11.22672 -10.92048 -10.78646 -10.41678 -10.32158 -10.12071 -9.96101 -9.70548 -9.45016 -8.94579 -8.52021 -8.14674 -7.00470 -6.00160 -3.96713 3.29804 3.40394 3.42433 4.38687 4.45453 4.85330 5.22170 5.31443 5.41290 5.52016 5.58287 5.72224 5.83478 5.90799 5.95256 6.05101 6.17066 6.28761 6.29608 6.34670 6.42694 6.51961 6.60833 6.65531 6.83060 6.98147 7.00854 7.29369 7.38970 7.68490 7.76510 8.14348 8.42360 8.77741 9.09957 9.63180 11.13102 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037946 B = 0.010634 C = 0.009052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.719392 B = 2632.426914 C = 3092.493109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.183 3.817 3 H 0.036 0.964 4 C -0.496 4.496 5 H 0.083 0.917 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.885 3.115 9 H -0.282 1.282 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.522 5.522 13 C 0.064 3.936 14 C 0.064 3.936 15 N -0.671 5.671 16 C 0.075 3.925 17 C -0.092 4.092 18 H 0.088 0.912 19 C -0.144 4.144 20 C 0.083 3.917 21 H 0.053 0.947 22 H 0.041 0.959 23 H 0.028 0.972 24 H 0.262 0.738 25 H 0.065 0.935 26 H 0.025 0.975 27 H 0.059 0.941 28 H 0.028 0.972 29 H 0.334 0.666 30 H 0.059 0.941 31 H 0.021 0.979 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.012 0.988 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.818 -2.167 -13.392 13.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.076 3.924 3 H 0.054 0.946 4 C -0.534 4.534 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.716 3.284 9 H -0.210 1.210 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.245 5.245 13 C -0.064 4.064 14 C -0.066 4.066 15 N -0.300 5.300 16 C -0.053 4.053 17 C -0.112 4.112 18 H 0.106 0.894 19 C -0.202 4.202 20 C -0.046 4.046 21 H 0.072 0.928 22 H 0.060 0.940 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.151 0.849 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.030 0.970 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.149 -1.988 -12.543 12.751 hybrid contribution -2.022 0.629 -0.649 2.215 sum -3.170 -1.358 -13.191 13.635 Atomic orbital electron populations 1.22859 1.02082 1.00996 0.98471 1.19784 0.88247 0.95360 0.89024 0.94573 1.20978 1.31093 1.13638 0.87714 0.89886 1.24909 0.95962 0.96511 0.95882 1.69885 1.45976 1.40365 0.97788 0.86907 0.80535 0.84178 0.76781 1.20959 1.22515 1.19432 1.60456 1.61547 1.01352 1.01138 1.22435 0.97902 0.96327 0.89757 1.21706 0.91547 0.96103 0.97272 1.59652 1.25725 1.10715 1.33937 1.20949 0.98151 0.89025 0.97171 1.20198 1.01820 0.94218 0.94941 0.89356 1.21811 1.00190 0.96032 1.02177 1.21689 0.92975 0.89189 1.00730 0.92791 0.94003 0.95313 0.92774 0.91690 0.95708 0.92203 0.95423 0.84878 0.92262 0.96059 0.93380 0.93718 0.91885 0.97020 0.89410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.12 8.10 37.16 0.30 -3.82 16 2 C 0.18 4.44 1.88 -68.87 -0.13 4.31 16 3 H 0.04 0.92 7.13 -51.93 -0.37 0.55 16 4 C -0.50 -13.96 8.07 -34.44 -0.28 -14.24 16 5 H 0.08 2.55 7.64 -52.48 -0.40 2.15 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 8 Si 0.88 22.24 24.31 -169.99 -4.13 18.11 16 9 H -0.28 -6.94 6.92 56.52 0.39 -6.55 16 10 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 11 H -0.27 -6.52 6.53 56.52 0.37 -6.16 16 12 N -0.52 -11.12 4.09 -227.62 -0.93 -12.05 16 13 C 0.06 1.15 5.64 -2.62 -0.01 1.14 16 14 C 0.06 0.94 5.86 -4.75 -0.03 0.91 16 15 N -0.67 -9.79 6.58 -117.86 -0.78 -10.57 16 16 C 0.08 1.09 5.07 -6.42 -0.03 1.06 16 17 C -0.09 -1.58 2.60 -93.22 -0.24 -1.82 16 18 H 0.09 1.78 8.12 -51.93 -0.42 1.35 16 19 C -0.14 -2.13 9.01 37.16 0.33 -1.80 16 20 C 0.08 1.64 3.27 -4.55 -0.01 1.62 16 21 H 0.05 1.19 6.94 -51.93 -0.36 0.83 16 22 H 0.04 0.96 3.45 -51.93 -0.18 0.79 16 23 H 0.03 0.56 6.33 -51.93 -0.33 0.23 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.02 0.44 6.18 -51.93 -0.32 0.12 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.03 0.40 6.54 -51.93 -0.34 0.06 16 29 H 0.33 3.90 8.89 -39.29 -0.35 3.55 16 30 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 31 H 0.02 0.30 7.38 -51.93 -0.38 -0.09 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 35 H 0.01 0.22 6.96 -51.93 -0.36 -0.14 16 36 H 0.09 1.96 5.63 -51.93 -0.29 1.67 16 LS Contribution 262.74 15.07 3.96 3.96 Total: -1.00 -30.20 262.74 -7.13 -37.33 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.82 Total: 0.87 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -0.20 Total: -10.77 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.93 Total: -49.51 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.13 Total: 18.11 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.20 -7.13 -37.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307033245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.233 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds