Wall clock time and date at job start Mon Mar 30 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47006 * 2 1 4 4 C 1.50697 * 109.47351 * 119.99990 * 2 1 3 5 5 H 1.08004 * 120.00108 * 119.99728 * 4 2 1 6 6 C 1.37883 * 120.00090 * 300.00427 * 4 2 1 7 7 N 1.31517 * 120.00006 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99977 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46782 * 90.00015 * 8 6 4 10 10 H 1.48489 * 109.47392 * 210.00359 * 8 6 4 11 11 H 1.48504 * 109.46836 * 330.00317 * 8 6 4 12 12 N 1.46901 * 109.47318 * 240.00013 * 2 1 3 13 13 C 1.48203 * 110.99615 * 70.94473 * 12 2 1 14 14 C 1.53937 * 112.77079 * 191.67825 * 13 12 2 15 15 N 1.44262 * 112.54542 * 318.38706 * 14 13 12 16 16 C 1.48098 * 109.97490 * 93.91019 * 15 14 13 17 17 C 1.46136 * 112.19962 * 279.69503 * 16 15 14 18 18 H 1.09007 * 108.99619 * 300.32503 * 17 16 15 19 19 C 1.52995 * 108.99685 * 181.48327 * 17 16 15 20 20 C 1.44309 * 111.04007 * 302.76685 * 12 2 1 21 21 H 1.09004 * 109.47178 * 185.94584 * 1 2 3 22 22 H 1.08998 * 109.47250 * 305.94564 * 1 2 3 23 23 H 1.09004 * 109.47093 * 65.94570 * 1 2 3 24 24 H 0.96998 * 119.99724 * 179.97438 * 7 6 4 25 25 H 1.08994 * 108.82202 * 70.83153 * 13 12 2 26 26 H 1.08998 * 108.74048 * 312.46771 * 13 12 2 27 27 H 1.08996 * 108.86554 * 197.59377 * 14 13 12 28 28 H 1.09000 * 108.86391 * 79.17257 * 14 13 12 29 29 H 1.00899 * 110.99410 * 217.14003 * 15 14 13 30 30 H 1.08996 * 108.93461 * 158.99850 * 16 15 14 31 31 H 1.08996 * 108.93473 * 40.39594 * 16 15 14 32 32 H 1.08999 * 109.47201 * 58.85219 * 19 17 16 33 33 H 1.08997 * 109.47415 * 298.84722 * 19 17 16 34 34 H 1.08996 * 109.47203 * 178.84463 * 19 17 16 35 35 H 1.09005 * 109.68882 * 100.14671 * 20 12 2 36 36 H 1.08994 * 109.56416 * 339.62196 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 2.1373 -0.8597 3.5566 8 14 0.6258 1.2797 2.6542 9 1 -0.8021 0.8742 2.6994 10 1 0.9770 1.9953 3.9070 11 1 0.8490 2.1772 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 1.7708 0.1145 -2.4173 14 6 2.0007 -0.6799 -3.7157 15 7 3.1748 -1.5157 -3.6522 16 6 2.8009 -2.8811 -3.2170 17 6 2.6274 -2.9708 -1.7687 18 1 3.5625 -2.6943 -1.2815 19 6 2.2803 -4.4138 -1.3972 20 6 1.5051 -2.0391 -1.2666 21 1 -0.3634 -1.0222 0.1065 22 1 -0.3633 0.6032 0.8319 23 1 -0.3633 0.4189 -0.9385 24 1 1.9032 -0.5281 4.4375 25 1 2.4374 0.9768 -2.4100 26 1 0.7397 0.4675 -2.3989 27 1 2.1113 0.0212 -4.5429 28 1 1.1302 -1.3086 -3.9030 29 1 3.6516 -1.5374 -4.5412 30 1 3.5824 -3.5764 -3.5233 31 1 1.8674 -3.1641 -3.7033 32 1 3.0786 -5.0769 -1.7304 33 1 1.3458 -4.6987 -1.8805 34 1 2.1692 -4.4939 -0.3158 35 1 0.6627 -2.0762 -1.9573 36 1 1.1826 -2.3564 -0.2751 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307033245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:54 Heat of formation + Delta-G solvation = -6.895234 kcal Electronic energy + Delta-G solvation = -15346.932416 eV Core-core repulsion = 13058.320490 eV Total energy + Delta-G solvation = -2288.611925 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.38419 -37.28059 -34.85493 -34.42885 -31.65513 -28.91867 -27.18172 -26.64310 -25.77252 -22.43037 -21.14034 -20.31847 -18.76386 -17.63838 -16.97763 -16.40081 -15.80271 -15.58075 -15.25964 -14.72785 -14.42556 -14.07108 -13.90813 -13.57213 -13.24524 -13.20376 -12.75294 -12.60872 -12.30672 -12.09436 -11.83023 -11.69515 -11.47568 -11.32735 -11.24627 -10.99410 -10.73270 -9.26203 -8.63172 -8.25057 -6.26008 1.29033 1.35223 1.45072 2.33419 3.08873 3.16480 3.46317 4.03920 4.12719 4.27426 4.31661 4.35636 4.51130 4.55295 4.59384 4.63668 4.71130 4.76823 4.80972 4.88743 4.99664 4.99734 5.09610 5.17496 5.32941 5.41088 5.49869 5.61444 5.68388 6.13613 6.25169 6.68220 6.72700 6.80991 6.93460 7.38328 8.92026 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037946 B = 0.010634 C = 0.009052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.719392 B = 2632.426914 C = 3092.493109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.186 3.814 3 H 0.026 0.974 4 C -0.495 4.495 5 H 0.038 0.962 6 C 0.011 3.989 7 N -0.950 5.950 8 Si 0.949 3.051 9 H -0.269 1.269 10 H -0.298 1.298 11 H -0.252 1.252 12 N -0.541 5.541 13 C 0.058 3.942 14 C 0.070 3.930 15 N -0.689 5.689 16 C 0.078 3.922 17 C -0.087 4.087 18 H 0.048 0.952 19 C -0.138 4.138 20 C 0.089 3.911 21 H 0.048 0.952 22 H 0.035 0.965 23 H 0.059 0.941 24 H 0.264 0.736 25 H 0.059 0.941 26 H 0.032 0.968 27 H 0.091 0.909 28 H 0.034 0.966 29 H 0.354 0.646 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.028 0.972 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.957 -1.481 -16.063 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.078 3.922 3 H 0.044 0.956 4 C -0.533 4.533 5 H 0.056 0.944 6 C -0.186 4.186 7 N -0.591 5.591 8 Si 0.776 3.224 9 H -0.196 1.196 10 H -0.226 1.226 11 H -0.176 1.176 12 N -0.264 5.264 13 C -0.070 4.070 14 C -0.061 4.061 15 N -0.320 5.320 16 C -0.050 4.050 17 C -0.106 4.106 18 H 0.067 0.933 19 C -0.196 4.196 20 C -0.040 4.040 21 H 0.067 0.933 22 H 0.054 0.946 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.110 0.890 28 H 0.052 0.948 29 H 0.174 0.826 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.281 -1.307 -15.259 15.484 hybrid contribution -1.571 0.348 0.163 1.617 sum -3.852 -0.959 -15.096 15.609 Atomic orbital electron populations 1.22693 1.00160 1.00877 0.99840 1.19557 0.89610 0.94259 0.88769 0.95571 1.21176 1.29954 1.12287 0.89905 0.94410 1.25743 0.97584 0.99866 0.95415 1.70041 1.48066 1.42538 0.98440 0.85861 0.79043 0.80331 0.77116 1.19551 1.22602 1.17588 1.60386 1.62153 1.02139 1.01714 1.22604 0.98205 0.96379 0.89772 1.21646 0.91802 0.96596 0.96032 1.59503 1.26189 1.10795 1.35526 1.20856 0.99736 0.89671 0.94754 1.20139 0.98833 0.94784 0.96894 0.93325 1.21752 1.02036 0.95128 1.00702 1.21604 0.94419 0.88913 0.99032 0.93300 0.94603 0.92202 0.92698 0.92224 0.94959 0.89035 0.94772 0.82619 0.90192 0.94446 0.91099 0.91770 0.94493 0.95425 0.93291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.59 8.10 71.98 0.58 -7.01 16 2 C 0.19 9.01 1.88 44.17 0.08 9.09 16 3 H 0.03 1.32 7.13 -2.39 -0.02 1.30 16 4 C -0.49 -28.94 8.07 25.60 0.21 -28.73 16 5 H 0.04 2.49 7.64 -2.91 -0.02 2.46 16 6 C 0.01 0.62 5.45 84.66 0.46 1.09 16 7 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 8 Si 0.95 46.02 24.31 68.60 1.67 47.68 16 9 H -0.27 -12.43 6.92 99.48 0.69 -11.74 16 10 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 11 H -0.25 -11.40 6.53 99.48 0.65 -10.76 16 12 N -0.54 -22.86 4.09 -874.06 -3.57 -26.43 16 13 C 0.06 1.95 5.64 86.37 0.49 2.44 16 14 C 0.07 1.78 5.86 87.11 0.51 2.29 16 15 N -0.69 -18.01 6.58 -526.81 -3.47 -21.48 16 16 C 0.08 2.04 5.07 83.96 0.43 2.46 16 17 C -0.09 -2.94 2.60 -12.48 -0.03 -2.97 16 18 H 0.05 2.02 8.12 -2.38 -0.02 2.00 16 19 C -0.14 -4.00 9.01 71.98 0.65 -3.35 16 20 C 0.09 3.50 3.27 87.22 0.28 3.78 16 21 H 0.05 2.11 6.94 -2.39 -0.02 2.10 16 22 H 0.04 1.57 3.45 -2.39 -0.01 1.56 16 23 H 0.06 2.17 6.33 -2.38 -0.02 2.16 16 24 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 25 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.03 1.03 6.18 -2.39 -0.01 1.02 16 27 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.03 0.84 6.54 -2.39 -0.02 0.83 16 29 H 0.35 6.93 8.89 -89.69 -0.80 6.13 16 30 H 0.08 1.77 8.13 -2.39 -0.02 1.75 16 31 H 0.04 0.88 7.38 -2.39 -0.02 0.87 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.04 1.24 8.11 -2.39 -0.02 1.22 16 35 H 0.03 0.98 6.96 -2.38 -0.02 0.96 16 36 H 0.05 2.28 5.63 -2.39 -0.01 2.26 16 Total: -1.00 -67.62 262.74 -1.23 -68.85 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.18 Total: 12.49 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 3.66 Total: -20.91 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -6.74 Total: -108.12 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.67 Total: 47.68 kcal Total: -67.62 -1.23 -68.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307033245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.956 kcal (2) G-P(sol) polarization free energy of solvation -67.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds