Wall clock time and date at job start Mon Mar 30 2020 02:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46999 * 2 1 4 4 C 1.50698 * 109.46905 * 239.99383 * 2 1 3 5 5 H 1.07999 * 119.99726 * 239.99754 * 4 2 1 6 6 C 1.37876 * 119.99940 * 60.00525 * 4 2 1 7 7 N 1.31516 * 119.99827 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99984 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47458 * 59.99744 * 8 6 4 10 10 H 1.48500 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46921 * 299.99612 * 8 6 4 12 12 N 1.46901 * 109.46774 * 119.99668 * 2 1 3 13 13 C 1.44573 * 110.99941 * 176.04666 * 12 2 1 14 14 C 1.54205 * 108.84923 * 220.35169 * 13 12 2 15 15 N 1.40018 * 112.08031 * 281.17639 * 14 13 12 16 16 C 1.47912 * 114.06308 * 61.81034 * 15 14 13 17 17 C 1.50808 * 108.49872 * 280.07402 * 16 15 14 18 18 H 1.08994 * 108.88482 * 331.92376 * 17 16 15 19 19 C 1.52996 * 108.95427 * 213.22654 * 17 16 15 20 20 C 1.48066 * 111.00183 * 303.73360 * 12 2 1 21 21 H 1.09000 * 109.47145 * 60.00070 * 1 2 3 22 22 H 1.08991 * 109.47495 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47042 * 300.00729 * 1 2 3 24 24 H 0.97008 * 119.99592 * 179.97438 * 7 6 4 25 25 H 1.08996 * 109.57717 * 100.53757 * 13 12 2 26 26 H 1.08998 * 109.57399 * 340.15584 * 13 12 2 27 27 H 1.08997 * 108.96015 * 160.51329 * 14 13 12 28 28 H 1.08996 * 108.88928 * 41.80192 * 14 13 12 29 29 H 1.00901 * 110.99817 * 188.09251 * 15 14 13 30 30 H 1.08999 * 109.63160 * 39.77825 * 16 15 14 31 31 H 1.09000 * 109.63131 * 160.37392 * 16 15 14 32 32 H 1.09005 * 109.47414 * 297.41303 * 19 17 16 33 33 H 1.08998 * 109.47658 * 57.41286 * 19 17 16 34 34 H 1.08999 * 109.47149 * 177.41074 * 19 17 16 35 35 H 1.09004 * 108.87744 * 312.96899 * 20 12 2 36 36 H 1.09001 * 108.88192 * 71.52467 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1199 -4.0078 9 1 1.8280 -2.5201 -4.0080 10 1 1.8279 -0.4196 -5.2203 11 1 3.8075 -1.1193 -4.0076 12 7 2.0196 -0.6924 1.1995 13 6 3.4618 -0.7929 1.1874 14 6 3.8685 -2.1866 1.7070 15 7 3.8066 -2.2663 3.1036 16 6 2.4535 -2.0502 3.6606 17 6 2.1835 -0.5670 3.6999 18 1 3.1312 -0.0385 3.8027 19 6 1.3059 -0.2537 4.9133 20 6 1.4727 -0.0749 2.4291 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 0.7089 1.1611 -3.4845 25 1 3.8869 -0.0242 1.8327 26 1 3.8285 -0.6615 0.1694 27 1 4.8875 -2.4011 1.3850 28 1 3.1980 -2.9321 1.2796 29 1 4.1991 -3.1352 3.4339 30 1 1.7142 -2.5404 3.0272 31 1 2.4036 -2.4584 4.6700 32 1 0.3466 -0.7605 4.8085 33 1 1.8024 -0.5995 5.8199 34 1 1.1434 0.8223 4.9760 35 1 1.5836 1.0073 2.3596 36 1 0.4124 -0.3164 2.5036 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307033246.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:56 Heat of formation + Delta-G solvation = -14.842764 kcal Electronic energy + Delta-G solvation = -15215.816938 eV Core-core repulsion = 12926.860382 eV Total energy + Delta-G solvation = -2288.956556 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.29391 -37.06172 -35.08711 -34.33932 -31.19077 -28.81978 -27.62715 -26.14375 -25.60740 -22.12487 -21.59817 -20.19769 -18.45247 -17.58122 -16.79064 -16.36158 -16.07171 -15.80503 -15.05979 -14.58500 -14.31548 -13.72258 -13.56777 -13.46770 -13.00700 -12.89794 -12.63867 -12.54334 -12.42345 -12.07421 -12.04746 -11.85008 -11.60772 -11.55539 -11.15718 -10.88677 -10.52169 -9.20913 -8.80248 -8.11841 -6.23672 1.41490 1.43346 1.50977 2.41255 3.15042 3.31317 3.44093 3.96151 4.11441 4.26370 4.35914 4.47105 4.67203 4.70317 4.76407 4.86075 4.90450 4.92235 4.95944 4.98931 5.10874 5.19307 5.20820 5.27859 5.34865 5.49726 5.49856 5.71446 5.80752 6.25972 6.37525 6.50239 6.75829 6.81927 6.94767 7.45210 8.93989 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041599 B = 0.009428 C = 0.008059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.933716 B = 2969.259912 C = 3473.716236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.220 3.780 3 H -0.045 1.045 4 C -0.516 4.516 5 H 0.059 0.941 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.550 5.550 13 C 0.068 3.932 14 C 0.092 3.908 15 N -0.699 5.699 16 C 0.080 3.920 17 C -0.087 4.087 18 H 0.063 0.937 19 C -0.135 4.135 20 C 0.067 3.933 21 H 0.059 0.941 22 H 0.029 0.971 23 H 0.026 0.974 24 H 0.262 0.738 25 H 0.027 0.973 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.007 0.993 29 H 0.354 0.646 30 H 0.027 0.973 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.004 0.996 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.021 -5.048 11.837 13.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.113 3.887 3 H -0.027 1.027 4 C -0.554 4.554 5 H 0.077 0.923 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.275 5.275 13 C -0.061 4.061 14 C -0.039 4.039 15 N -0.332 5.332 16 C -0.048 4.048 17 C -0.106 4.106 18 H 0.082 0.918 19 C -0.193 4.193 20 C -0.061 4.061 21 H 0.078 0.922 22 H 0.048 0.952 23 H 0.045 0.955 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.025 0.975 29 H 0.175 0.825 30 H 0.046 0.954 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.022 0.978 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.932 -4.750 11.736 12.996 hybrid contribution -0.037 0.062 -1.462 1.464 sum 2.895 -4.688 10.274 11.658 Atomic orbital electron populations 1.21626 0.97468 0.98993 0.99552 1.19054 0.92555 0.89796 0.87250 1.02718 1.21354 1.31044 1.12213 0.90809 0.92275 1.25742 0.95397 0.95782 1.01970 1.70026 1.37761 1.24251 1.24112 0.85565 0.78782 0.78624 0.78391 1.19712 1.20952 1.19542 1.60856 1.09716 1.54913 1.02049 1.21832 0.88027 0.96463 0.99759 1.20648 0.99530 0.95625 0.88144 1.57663 1.23499 1.41687 1.10373 1.21653 0.88513 0.95267 0.99358 1.21008 0.98858 0.97090 0.93693 0.91835 1.21783 0.99494 1.01596 0.96434 1.22482 0.99110 0.94609 0.89851 0.92212 0.95155 0.95522 0.92929 0.95499 0.91948 0.90495 0.97495 0.82528 0.95438 0.88752 0.92259 0.90508 0.92817 0.97813 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 8.63 71.98 0.62 -5.41 16 2 C 0.22 11.70 2.02 44.17 0.09 11.79 16 3 H -0.04 -2.67 8.14 -2.39 -0.02 -2.69 16 4 C -0.52 -28.95 7.39 25.60 0.19 -28.76 16 5 H 0.06 3.29 6.96 -2.91 -0.02 3.27 16 6 C 0.01 0.54 5.30 84.65 0.45 0.99 16 7 N -0.92 -54.12 11.32 21.45 0.24 -53.88 16 8 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 N -0.55 -24.55 3.83 -874.36 -3.35 -27.90 16 13 C 0.07 2.84 4.94 87.15 0.43 3.27 16 14 C 0.09 3.11 6.11 87.95 0.54 3.65 16 15 N -0.70 -19.42 6.21 -528.24 -3.28 -22.70 16 16 C 0.08 2.20 5.74 85.40 0.49 2.69 16 17 C -0.09 -2.56 2.25 -11.27 -0.03 -2.59 16 18 H 0.06 2.01 7.22 -2.39 -0.02 2.00 16 19 C -0.13 -3.00 8.85 71.98 0.64 -2.37 16 20 C 0.07 2.55 3.97 86.31 0.34 2.89 16 21 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 22 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.03 1.20 6.61 -2.39 -0.02 1.18 16 24 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 25 H 0.03 1.10 6.93 -2.39 -0.02 1.08 16 26 H 0.06 2.91 5.98 -2.39 -0.01 2.89 16 27 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.01 0.26 8.06 -2.39 -0.02 0.24 16 29 H 0.35 7.71 8.85 -89.69 -0.79 6.92 16 30 H 0.03 0.88 7.57 -2.39 -0.02 0.87 16 31 H 0.09 1.97 7.67 -2.39 -0.02 1.95 16 32 H 0.06 1.27 8.11 -2.38 -0.02 1.25 16 33 H 0.08 1.37 8.02 -2.39 -0.02 1.35 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.00 0.15 8.03 -2.39 -0.02 0.13 16 36 H 0.06 2.37 6.74 -2.39 -0.02 2.36 16 Total: -1.00 -61.80 271.13 -0.35 -62.15 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.25 Total: 9.98 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 3.76 Total: -13.86 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -6.38 Total: -104.48 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -61.80 -0.35 -62.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307033246.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.309 kcal (2) G-P(sol) polarization free energy of solvation -61.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds