Wall clock time and date at job start Mon Mar 30 2020 02:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 N 1.46904 * 109.47027 * 240.00552 * 2 1 3 13 13 C 1.44258 * 110.99852 * 297.35666 * 12 2 1 14 14 C 1.53933 * 112.55562 * 217.13131 * 13 12 2 15 15 N 1.48197 * 112.77419 * 318.37546 * 14 13 12 16 16 C 1.44250 * 114.26887 * 318.13900 * 15 14 13 17 17 C 1.54257 * 108.63952 * 93.39598 * 16 15 14 18 18 H 1.08993 * 108.93018 * 41.95919 * 17 16 15 19 19 C 1.53004 * 108.98946 * 160.75628 * 17 16 15 20 20 C 1.46133 * 111.90597 * 281.37692 * 17 16 15 21 21 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 22 22 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 24 24 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 25 25 H 1.09003 * 108.86813 * 337.92391 * 13 12 2 26 26 H 1.08999 * 108.86357 * 96.33930 * 13 12 2 27 27 H 1.08996 * 108.81857 * 197.52751 * 14 13 12 28 28 H 1.08997 * 108.73511 * 79.16732 * 14 13 12 29 29 H 1.00900 * 110.99848 * 84.59138 * 15 14 13 30 30 H 1.08996 * 109.60853 * 333.64942 * 16 15 14 31 31 H 1.08993 * 109.74818 * 213.22186 * 16 15 14 32 32 H 1.09007 * 109.46652 * 182.39288 * 19 17 16 33 33 H 1.08996 * 109.47252 * 302.39393 * 19 17 16 34 34 H 1.08997 * 109.47196 * 62.39937 * 19 17 16 35 35 H 1.09007 * 108.93991 * 300.16894 * 20 17 16 36 36 H 1.08999 * 108.93857 * 181.56337 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 7 2.0196 -0.6924 -1.1995 13 6 1.6085 -2.0751 -1.2023 14 6 2.6874 -3.0108 -1.7767 15 7 3.3517 -2.4514 -2.9776 16 6 2.4544 -1.8080 -3.9059 17 6 2.4042 -0.3013 -3.5793 18 1 3.4136 0.0469 -3.3603 19 6 1.8702 0.4547 -4.7976 20 6 1.5448 -0.0207 -2.4312 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8912 -0.5369 4.4374 25 1 1.3868 -2.3790 -0.1793 26 1 0.7027 -2.1722 -1.8009 27 1 2.2238 -3.9610 -2.0418 28 1 3.4405 -3.1895 -1.0093 29 1 4.1072 -1.8348 -2.7186 30 1 1.4573 -2.2371 -3.8078 31 1 2.8150 -1.9496 -4.9247 32 1 1.8715 1.5249 -4.5902 33 1 2.5060 0.2508 -5.6591 34 1 0.8528 0.1273 -5.0112 35 1 0.5341 -0.3632 -2.6537 36 1 1.5223 1.0557 -2.2608 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307033247.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:59 Heat of formation + Delta-G solvation = -11.355628 kcal Electronic energy + Delta-G solvation = -15337.762106 eV Core-core repulsion = 13048.956763 eV Total energy + Delta-G solvation = -2288.805343 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.70424 -37.20913 -34.84054 -34.41995 -31.60508 -29.03267 -27.39547 -26.29517 -25.70212 -22.73678 -21.43944 -20.52783 -18.64397 -17.41255 -16.74973 -16.61841 -16.27680 -15.48844 -14.99493 -14.60828 -14.28462 -14.16120 -13.95029 -13.65567 -13.19097 -13.11276 -13.00385 -12.69366 -12.29449 -12.27371 -12.10092 -11.75672 -11.59518 -11.36538 -11.31449 -11.04166 -10.78580 -9.24596 -8.91464 -8.30182 -6.32379 1.26669 1.32757 1.42448 2.29074 3.03065 3.08249 3.61302 3.80525 4.12179 4.17264 4.31568 4.33906 4.41710 4.51452 4.55794 4.67765 4.70329 4.78379 4.83080 4.90001 4.93328 5.05223 5.12294 5.19686 5.26775 5.32681 5.37691 5.47847 5.60218 6.03182 6.32723 6.46055 6.60153 6.67635 6.75078 7.31889 8.86231 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041067 B = 0.010147 C = 0.008714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.647585 B = 2758.895297 C = 3212.540516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.185 3.815 3 H 0.031 0.969 4 C -0.502 4.502 5 H 0.043 0.957 6 C 0.013 3.987 7 N -0.946 5.946 8 Si 0.949 3.051 9 H -0.270 1.270 10 H -0.298 1.298 11 H -0.251 1.251 12 N -0.527 5.527 13 C 0.033 3.967 14 C 0.078 3.922 15 N -0.691 5.691 16 C 0.079 3.921 17 C -0.119 4.119 18 H 0.067 0.933 19 C -0.135 4.135 20 C 0.058 3.942 21 H 0.058 0.942 22 H 0.048 0.952 23 H 0.036 0.964 24 H 0.265 0.735 25 H 0.057 0.943 26 H 0.029 0.971 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.344 0.656 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.031 0.969 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.789 1.938 -15.353 15.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.077 3.923 3 H 0.049 0.951 4 C -0.541 4.541 5 H 0.061 0.939 6 C -0.184 4.184 7 N -0.587 5.587 8 Si 0.776 3.224 9 H -0.197 1.197 10 H -0.226 1.226 11 H -0.175 1.175 12 N -0.250 5.250 13 C -0.097 4.097 14 C -0.052 4.052 15 N -0.320 5.320 16 C -0.051 4.051 17 C -0.139 4.139 18 H 0.085 0.915 19 C -0.193 4.193 20 C -0.069 4.069 21 H 0.077 0.923 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.162 0.838 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.306 1.352 -15.489 15.718 hybrid contribution -1.482 1.273 1.488 2.455 sum -3.788 2.625 -14.001 14.740 Atomic orbital electron populations 1.22708 0.99990 1.00978 0.99885 1.19635 0.89778 0.94458 0.88412 0.95075 1.21158 1.30441 1.12619 0.89851 0.93851 1.25733 0.97448 0.99773 0.95455 1.70029 1.47764 1.42367 0.98526 0.85866 0.78966 0.80302 0.77232 1.19679 1.22608 1.17518 1.61581 1.59769 1.02051 1.01621 1.22355 0.96677 0.89914 1.00780 1.22288 0.95787 0.96216 0.90949 1.59547 1.13779 1.42964 1.15721 1.21805 0.96242 0.90484 0.96523 1.20895 1.00036 0.98040 0.94949 0.91486 1.21735 1.01368 0.99630 0.96600 1.21201 0.96738 0.98654 0.90322 0.92317 0.93263 0.94590 0.92565 0.92409 0.95302 0.90635 0.92996 0.83754 0.92594 0.89503 0.92694 0.90880 0.92368 0.95045 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.35 8.11 71.98 0.58 -6.76 16 2 C 0.19 8.54 1.88 44.17 0.08 8.63 16 3 H 0.03 1.50 7.12 -2.38 -0.02 1.48 16 4 C -0.50 -28.17 7.99 25.60 0.20 -27.97 16 5 H 0.04 2.72 7.25 -2.91 -0.02 2.69 16 6 C 0.01 0.76 5.45 84.65 0.46 1.22 16 7 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 8 Si 0.95 44.81 24.37 68.60 1.67 46.48 16 9 H -0.27 -12.23 6.86 99.48 0.68 -11.55 16 10 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 11 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 12 N -0.53 -20.82 4.43 -889.83 -3.94 -24.77 16 13 C 0.03 1.27 3.54 87.11 0.31 1.58 16 14 C 0.08 2.59 6.78 86.37 0.59 3.18 16 15 N -0.69 -20.21 6.59 -512.88 -3.38 -23.59 16 16 C 0.08 1.98 5.64 87.22 0.49 2.48 16 17 C -0.12 -3.01 2.50 -12.48 -0.03 -3.04 16 18 H 0.07 1.84 7.62 -2.39 -0.02 1.82 16 19 C -0.13 -2.57 9.02 71.98 0.65 -1.92 16 20 C 0.06 1.82 3.06 83.96 0.26 2.08 16 21 H 0.06 2.07 6.94 -2.38 -0.02 2.05 16 22 H 0.05 2.05 7.10 -2.39 -0.02 2.03 16 23 H 0.04 1.55 3.25 -2.38 -0.01 1.54 16 24 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 25 H 0.06 2.63 5.66 -2.39 -0.01 2.61 16 26 H 0.03 1.02 6.54 -2.39 -0.02 1.00 16 27 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 29 H 0.34 10.45 8.08 -89.69 -0.72 9.72 16 30 H 0.06 1.45 6.96 -2.39 -0.02 1.44 16 31 H 0.09 1.84 7.96 -2.39 -0.02 1.82 16 32 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.03 0.96 6.88 -2.38 -0.02 0.95 16 36 H 0.06 1.87 7.79 -2.39 -0.02 1.86 16 Total: -1.00 -61.67 261.92 -1.51 -63.17 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.25 Total: 17.72 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: 3.59 Total: -20.52 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -7.02 Total: -106.86 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.67 Total: 46.48 kcal Total: -61.67 -1.51 -63.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307033247.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.817 kcal (2) G-P(sol) polarization free energy of solvation -61.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds