Wall clock time and date at job start Mon Mar 30 2020 03:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47383 * 2 1 4 4 C 1.50703 * 109.47524 * 239.99449 * 2 1 3 5 5 H 1.07997 * 119.99967 * 304.99577 * 4 2 1 6 6 C 1.37876 * 120.00120 * 124.98820 * 4 2 1 7 7 N 1.31513 * 119.99919 * 184.77976 * 6 4 2 8 8 Si 1.86797 * 119.99893 * 4.78357 * 6 4 2 9 9 H 1.48498 * 109.47625 * 84.63938 * 8 6 4 10 10 H 1.48496 * 109.46967 * 204.64108 * 8 6 4 11 11 H 1.48505 * 109.47007 * 324.63706 * 8 6 4 12 12 N 1.46903 * 109.46974 * 119.99503 * 2 1 3 13 13 C 1.48561 * 111.00140 * 179.87253 * 12 2 1 14 14 C 1.54378 * 104.59878 * 200.96019 * 13 12 2 15 15 C 1.54263 * 105.05651 * 23.85294 * 14 13 12 16 16 C 1.53000 * 110.32456 * 241.10090 * 15 14 13 17 17 C 1.53005 * 110.32382 * 118.99992 * 15 14 13 18 18 N 1.46897 * 109.47151 * 61.45042 * 17 15 14 19 19 C 1.48559 * 110.99993 * 64.45618 * 12 2 1 20 20 H 1.09000 * 109.46930 * 54.96472 * 1 2 3 21 21 H 1.08999 * 109.47243 * 174.96019 * 1 2 3 22 22 H 1.08997 * 109.47055 * 294.96135 * 1 2 3 23 23 H 0.96996 * 119.99790 * 180.02562 * 7 6 4 24 24 H 1.08997 * 110.41278 * 319.74041 * 13 12 2 25 25 H 1.08999 * 110.41045 * 82.06494 * 13 12 2 26 26 H 1.08994 * 110.32663 * 142.74881 * 14 13 12 27 27 H 1.08996 * 110.32230 * 264.85918 * 14 13 12 28 28 H 1.09005 * 109.46454 * 58.54936 * 16 15 14 29 29 H 1.09005 * 109.46925 * 178.54506 * 16 15 14 30 30 H 1.08997 * 109.47600 * 298.54887 * 16 15 14 31 31 H 1.08993 * 109.47119 * 181.45458 * 17 15 14 32 32 H 1.08996 * 109.46960 * 301.45290 * 17 15 14 33 33 H 1.00907 * 110.99790 * 56.04813 * 18 17 15 34 34 H 1.00895 * 111.00333 * 180.02562 * 18 17 15 35 35 H 1.08998 * 110.41115 * 277.82027 * 19 12 2 36 36 H 1.09005 * 110.41293 * 40.26455 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 1.7068 -1.7180 -1.4430 6 6 2.9078 -0.0743 -2.0848 7 7 3.2728 -0.6570 -3.2058 8 14 3.5752 1.6153 -1.6499 9 1 4.7583 1.4675 -0.7646 10 1 3.9723 2.3254 -2.8922 11 1 2.5256 2.3963 -0.9472 12 7 2.0196 -0.6924 1.1995 13 6 3.5047 -0.7149 1.2324 14 6 3.8553 -1.8801 2.1825 15 6 2.6240 -2.8089 2.1489 16 6 2.0084 -2.9260 3.5447 17 6 3.0157 -4.1918 1.6243 18 7 4.0095 -4.7932 2.5235 19 6 1.6332 -2.1268 1.1813 20 1 -0.3633 0.5900 -0.8415 21 1 -0.3634 -1.0237 -0.0903 22 1 -0.3633 0.4337 0.9316 23 1 3.8889 -0.2095 -3.8067 24 1 3.9042 -0.9036 0.2360 25 1 3.8906 0.2263 1.6238 26 1 4.7382 -2.4088 1.8236 27 1 4.0227 -1.5073 3.1930 28 1 1.7236 -1.9357 3.9003 29 1 1.1256 -3.5638 3.5001 30 1 2.7373 -3.3617 4.2280 31 1 2.1318 -4.8281 1.5819 32 1 3.4414 -4.0943 0.6256 33 1 3.6621 -4.8352 3.4700 34 1 4.2849 -5.7077 2.1982 35 1 0.6100 -2.2493 1.5362 36 1 1.7399 -2.5365 0.1768 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307034400.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:54 Heat of formation + Delta-G solvation = -25.240688 kcal Electronic energy + Delta-G solvation = -15322.699933 eV Core-core repulsion = 13033.292489 eV Total energy + Delta-G solvation = -2289.407444 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.50866 -37.02398 -34.57078 -33.25140 -31.15505 -29.28863 -27.43803 -27.17155 -24.94216 -22.90003 -20.85143 -19.92504 -18.96508 -17.30169 -16.55024 -16.24149 -15.61053 -15.37406 -14.96893 -14.83026 -14.41893 -14.00634 -13.91829 -13.53931 -13.34649 -13.00716 -12.81796 -12.47488 -12.29901 -11.91374 -11.85264 -11.66882 -11.48441 -11.42058 -11.16621 -11.04513 -10.73251 -9.53460 -8.98958 -8.32987 -6.37571 1.29216 1.30994 1.39174 2.28799 2.99086 3.51419 3.66010 3.91405 4.05879 4.09242 4.42479 4.49217 4.58713 4.64919 4.73904 4.84736 4.85917 4.92801 4.97498 5.01222 5.13969 5.22434 5.31901 5.33393 5.36780 5.43554 5.46631 5.61853 5.65342 6.13380 6.27028 6.36702 6.48161 6.69649 6.71559 7.31183 8.83061 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034738 B = 0.010863 C = 0.010096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.849897 B = 2576.947495 C = 2772.703851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.143 3.857 3 H 0.045 0.955 4 C -0.523 4.523 5 H 0.035 0.965 6 C 0.023 3.977 7 N -0.944 5.944 8 Si 0.928 3.072 9 H -0.264 1.264 10 H -0.289 1.289 11 H -0.247 1.247 12 N -0.504 5.504 13 C 0.025 3.975 14 C -0.090 4.090 15 C -0.060 4.060 16 C -0.123 4.123 17 C 0.082 3.918 18 N -0.847 5.847 19 C 0.049 3.951 20 H 0.044 0.956 21 H 0.039 0.961 22 H 0.057 0.943 23 H 0.264 0.736 24 H 0.026 0.974 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.042 0.958 33 H 0.348 0.652 34 H 0.348 0.652 35 H 0.071 0.929 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.940 -4.021 13.286 13.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.035 3.965 3 H 0.063 0.937 4 C -0.562 4.562 5 H 0.053 0.947 6 C -0.176 4.176 7 N -0.584 5.584 8 Si 0.754 3.246 9 H -0.189 1.189 10 H -0.216 1.216 11 H -0.171 1.171 12 N -0.227 5.227 13 C -0.104 4.104 14 C -0.129 4.129 15 C -0.061 4.061 16 C -0.181 4.181 17 C -0.050 4.050 18 N -0.379 5.379 19 C -0.080 4.080 20 H 0.063 0.937 21 H 0.058 0.942 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.090 0.910 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.627 -3.082 13.393 13.757 hybrid contribution 0.075 -0.475 -1.445 1.523 sum -0.551 -3.557 11.948 12.479 Atomic orbital electron populations 1.21624 0.95488 1.00415 1.00068 1.20032 0.94272 0.94931 0.87220 0.93688 1.21608 1.26062 1.00911 1.07630 0.94715 1.25889 0.96233 1.01136 0.94300 1.70057 1.35539 1.40831 1.11983 0.86054 0.79871 0.80944 0.77778 1.18906 1.21555 1.17101 1.65859 1.07691 1.11671 1.37509 1.23023 0.90285 0.98669 0.98412 1.22175 0.97330 0.94330 0.99016 1.21282 0.94696 0.93782 0.96322 1.21743 1.00168 1.02096 0.94060 1.21633 0.93389 0.94318 0.95613 1.58623 1.44061 1.29094 1.06168 1.22967 0.98302 0.89357 0.97343 0.93702 0.94173 0.92386 0.92670 0.95598 0.92068 0.91912 0.90548 0.92442 0.92378 0.91088 0.94981 0.93982 0.83690 0.83917 0.91017 0.95619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 9.02 71.98 0.65 -4.21 16 2 C 0.14 6.73 2.40 44.17 0.11 6.83 16 3 H 0.05 2.18 4.48 -2.39 -0.01 2.17 16 4 C -0.52 -29.22 6.59 25.60 0.17 -29.05 16 5 H 0.03 2.18 6.73 -2.91 -0.02 2.16 16 6 C 0.02 1.33 5.08 84.65 0.43 1.76 16 7 N -0.94 -58.72 13.96 21.45 0.30 -58.42 16 8 Si 0.93 44.55 26.46 68.60 1.82 46.36 16 9 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 11 H -0.25 -11.10 6.20 99.48 0.62 -10.48 16 12 N -0.50 -21.21 5.40 -860.72 -4.65 -25.86 16 13 C 0.02 1.04 5.90 86.45 0.51 1.55 16 14 C -0.09 -3.08 6.05 31.49 0.19 -2.89 16 15 C -0.06 -1.87 0.82 -51.28 -0.04 -1.91 16 16 C -0.12 -2.98 7.89 71.98 0.57 -2.42 16 17 C 0.08 2.40 5.50 86.31 0.47 2.87 16 18 N -0.85 -19.56 9.08 -186.73 -1.70 -21.26 16 19 C 0.05 1.90 4.47 86.45 0.39 2.29 16 20 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 21 H 0.04 1.63 7.32 -2.39 -0.02 1.61 16 22 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 24 H 0.03 1.29 5.88 -2.39 -0.01 1.28 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.06 2.22 7.49 -2.39 -0.02 2.20 16 27 H 0.08 2.29 7.71 -2.39 -0.02 2.27 16 28 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.07 1.42 6.69 -2.39 -0.02 1.41 16 31 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.04 1.51 8.13 -2.39 -0.02 1.49 16 33 H 0.35 6.57 7.15 -89.69 -0.64 5.93 16 34 H 0.35 6.77 9.08 -89.70 -0.81 5.96 16 35 H 0.07 2.57 7.54 -2.39 -0.02 2.55 16 36 H 0.03 1.19 5.50 -2.38 -0.01 1.18 16 Total: -1.00 -63.36 269.87 -1.27 -64.63 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -0.48 Total: 19.73 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 3.44 Total: -25.19 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -6.05 Total: -105.54 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.82 Total: 46.36 kcal Total: -63.36 -1.27 -64.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307034400.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.388 kcal (2) G-P(sol) polarization free energy of solvation -63.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds