Wall clock time and date at job start Mon Mar 30 2020 03:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47300 * 2 1 4 4 C 1.50700 * 109.46941 * 120.00401 * 2 1 3 5 5 H 1.07995 * 119.99869 * 119.99969 * 4 2 1 6 6 C 1.37880 * 119.99746 * 299.99420 * 4 2 1 7 7 N 1.31509 * 119.99700 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00172 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.47088 * 89.99706 * 8 6 4 10 10 H 1.48498 * 109.47047 * 209.99420 * 8 6 4 11 11 H 1.48501 * 109.47203 * 329.99755 * 8 6 4 12 12 N 1.46899 * 109.46763 * 240.00174 * 2 1 3 13 13 C 1.48722 * 111.01789 * 63.13987 * 12 2 1 14 14 C 1.54379 * 104.51946 * 158.96521 * 13 12 2 15 15 C 1.54262 * 105.14809 * 336.26422 * 14 13 12 16 16 C 1.53002 * 110.32166 * 118.84842 * 15 14 13 17 17 C 1.52992 * 110.32317 * 241.05455 * 15 14 13 18 18 N 1.46897 * 109.47197 * 298.54713 * 17 15 14 19 19 C 1.48564 * 110.99602 * 178.64566 * 12 2 1 20 20 H 1.09006 * 109.47022 * 65.62281 * 1 2 3 21 21 H 1.08995 * 109.47573 * 185.62539 * 1 2 3 22 22 H 1.09003 * 109.46873 * 305.62720 * 1 2 3 23 23 H 0.97002 * 120.00142 * 180.02562 * 7 6 4 24 24 H 1.09003 * 110.38759 * 40.23569 * 13 12 2 25 25 H 1.08998 * 110.50461 * 277.74997 * 13 12 2 26 26 H 1.09006 * 110.31958 * 217.32226 * 14 13 12 27 27 H 1.08999 * 110.32735 * 95.21456 * 14 13 12 28 28 H 1.08994 * 109.47376 * 61.45374 * 16 15 14 29 29 H 1.08997 * 109.46747 * 181.45795 * 16 15 14 30 30 H 1.09001 * 109.46900 * 301.44894 * 16 15 14 31 31 H 1.08999 * 109.47334 * 58.54776 * 17 15 14 32 32 H 1.09003 * 109.47533 * 178.54690 * 17 15 14 33 33 H 1.00899 * 111.00287 * 56.04580 * 18 17 15 34 34 H 1.00910 * 111.00198 * 180.02562 * 18 17 15 35 35 H 1.08996 * 110.41009 * 82.18118 * 19 12 2 36 36 H 1.09005 * 110.41030 * 319.73350 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1380 -0.8591 3.5565 8 14 0.6249 1.2790 2.6542 9 1 -0.8027 0.8727 2.6998 10 1 0.9760 1.9949 3.9069 11 1 0.8472 2.1765 1.4921 12 7 2.0196 -0.6925 -1.1995 13 6 1.6060 0.0242 -2.4353 14 6 2.5966 -0.4624 -3.5147 15 6 3.8441 -0.9286 -2.7363 16 6 4.1003 -2.4164 -2.9849 17 6 5.0651 -0.1024 -3.1452 18 7 5.3295 -0.2953 -4.5773 19 6 3.5044 -0.6840 -1.2503 20 1 -0.3633 0.4242 -0.9361 21 1 -0.3634 -1.0226 0.1007 22 1 -0.3633 0.5987 0.8353 23 1 1.9034 -0.5280 4.4375 24 1 1.6937 1.1018 -2.2967 25 1 0.5851 -0.2431 -2.7080 26 1 2.8542 0.3552 -4.1881 27 1 2.1678 -1.2930 -4.0754 28 1 4.2877 -2.5805 -4.0460 29 1 4.9683 -2.7368 -2.4087 30 1 3.2273 -2.9918 -2.6768 31 1 4.8720 0.9524 -2.9502 32 1 5.9321 -0.4256 -2.5690 33 1 4.5174 -0.0636 -5.1294 34 1 6.1324 0.2403 -4.8721 35 1 3.9105 -1.4835 -0.6308 36 1 3.8903 0.2826 -0.9263 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307034401.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:57 Heat of formation + Delta-G solvation = 3.630638 kcal Electronic energy + Delta-G solvation = -15051.974892 eV Core-core repulsion = 12763.819402 eV Total energy + Delta-G solvation = -2288.155489 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.16192 -35.56916 -33.07314 -31.52643 -29.71686 -28.58510 -25.77439 -25.05105 -23.50939 -21.74290 -19.46660 -18.37121 -16.68806 -16.12555 -15.24500 -14.90034 -14.39548 -14.04059 -13.41216 -13.30552 -12.97722 -12.52972 -12.29190 -12.11813 -11.95269 -11.56143 -11.29679 -10.91681 -10.67753 -10.42195 -10.28528 -10.19762 -10.10294 -10.01127 -9.45345 -9.04089 -8.64171 -8.55782 -7.47938 -6.06314 -4.04585 3.26481 3.35326 3.37767 4.39877 4.51834 4.84266 4.96814 5.19986 5.25415 5.31636 5.54449 5.60740 5.80509 5.92493 5.98235 6.00117 6.20499 6.29593 6.36715 6.42442 6.44467 6.50633 6.54970 6.61577 6.75130 6.77833 6.86640 7.13443 7.24697 7.42728 7.55788 7.90998 8.00271 8.65217 9.01208 9.56007 11.06769 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045316 B = 0.008685 C = 0.008154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.730261 B = 3223.349556 C = 3433.081457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.171 3.829 3 H -0.003 1.003 4 C -0.504 4.504 5 H 0.081 0.919 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.271 1.271 12 N -0.491 5.491 13 C 0.027 3.973 14 C -0.111 4.111 15 C -0.068 4.068 16 C -0.120 4.120 17 C 0.074 3.926 18 N -0.848 5.848 19 C 0.061 3.939 20 H 0.029 0.971 21 H 0.061 0.939 22 H 0.038 0.962 23 H 0.264 0.736 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.337 0.663 34 H 0.336 0.664 35 H 0.083 0.917 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.496 2.966 -13.881 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.064 3.936 3 H 0.015 0.985 4 C -0.542 4.542 5 H 0.099 0.901 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.716 3.284 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.196 1.196 12 N -0.216 5.216 13 C -0.102 4.102 14 C -0.149 4.149 15 C -0.069 4.069 16 C -0.177 4.177 17 C -0.057 4.057 18 N -0.378 5.378 19 C -0.068 4.068 20 H 0.048 0.952 21 H 0.080 0.920 22 H 0.057 0.943 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.091 0.909 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.102 0.898 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.383 1.656 -13.436 13.746 hybrid contribution -0.557 2.815 0.275 2.883 sum 1.826 4.471 -13.161 14.019 Atomic orbital electron populations 1.22145 0.98453 1.01428 0.98079 1.19875 0.91675 0.92563 0.89525 0.98523 1.20957 1.31822 1.13532 0.87874 0.90051 1.24918 0.95822 0.96585 0.95834 1.69880 1.45764 1.40294 0.97846 0.86888 0.80900 0.83890 0.76680 1.20525 1.22469 1.19615 1.65348 1.06995 1.48071 1.01137 1.23124 0.98942 0.95999 0.92109 1.22383 0.95415 0.99977 0.97162 1.21402 0.93261 0.96433 0.95786 1.21647 1.01110 0.93837 1.01095 1.21852 0.98313 0.96801 0.88763 1.58733 1.09650 1.65063 1.04321 1.22941 0.89826 1.00731 0.93321 0.95225 0.92002 0.94313 0.92653 0.95156 0.90975 0.92836 0.91202 0.92477 0.93340 0.92428 0.95859 0.90933 0.84944 0.85261 0.89816 0.94620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.64 37.16 0.32 -2.91 16 2 C 0.17 4.16 1.42 -68.86 -0.10 4.06 16 3 H 0.00 -0.07 7.04 -51.93 -0.37 -0.43 16 4 C -0.50 -14.28 8.69 -34.44 -0.30 -14.57 16 5 H 0.08 2.51 7.29 -52.49 -0.38 2.13 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 7 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 8 Si 0.89 22.23 24.31 -169.99 -4.13 18.09 16 9 H -0.28 -6.81 6.92 56.52 0.39 -6.42 16 10 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 11 H -0.27 -6.57 6.53 56.52 0.37 -6.20 16 12 N -0.49 -10.36 5.19 -223.26 -1.16 -11.52 16 13 C 0.03 0.46 5.49 -2.09 -0.01 0.45 16 14 C -0.11 -1.59 5.78 -25.35 -0.15 -1.74 16 15 C -0.07 -1.03 0.82 -153.13 -0.13 -1.15 16 16 C -0.12 -1.77 8.07 37.16 0.30 -1.47 16 17 C 0.07 0.97 5.53 -3.83 -0.02 0.94 16 18 N -0.85 -9.21 8.97 -10.37 -0.09 -9.30 16 19 C 0.06 1.17 4.82 -2.18 -0.01 1.16 16 20 H 0.03 0.57 6.76 -51.93 -0.35 0.22 16 21 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 22 H 0.04 0.89 3.44 -51.93 -0.18 0.72 16 23 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.03 0.53 7.93 -51.93 -0.41 0.12 16 25 H 0.07 1.19 7.56 -51.93 -0.39 0.80 16 26 H 0.05 0.66 6.63 -51.93 -0.34 0.31 16 27 H 0.07 0.96 7.71 -51.93 -0.40 0.56 16 28 H 0.06 0.78 7.71 -51.93 -0.40 0.38 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.34 3.38 7.32 -39.29 -0.29 3.09 16 34 H 0.34 2.99 9.08 -39.29 -0.36 2.63 16 35 H 0.08 1.77 7.20 -51.93 -0.37 1.39 16 36 H 0.04 0.72 7.66 -51.93 -0.40 0.32 16 LS Contribution 270.00 15.07 4.07 4.07 Total: -1.00 -30.07 270.00 -6.66 -36.74 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.93 Total: 2.06 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -0.19 Total: -13.28 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.48 Total: -47.67 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.13 Total: 18.09 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.07 -6.66 -36.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307034401.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.368 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds