Wall clock time and date at job start Mon Mar 30 2020 03:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47337 * 2 1 4 4 C 1.50698 * 109.47428 * 120.00331 * 2 1 3 5 5 H 1.07989 * 120.00244 * 114.43197 * 4 2 1 6 6 C 1.37877 * 119.99425 * 294.43520 * 4 2 1 7 7 N 1.31509 * 120.00329 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99510 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47315 * 90.00140 * 8 6 4 10 10 H 1.48506 * 109.46671 * 209.99810 * 8 6 4 11 11 H 1.48494 * 109.47409 * 329.99735 * 8 6 4 12 12 N 1.46899 * 109.47114 * 240.00284 * 2 1 3 13 13 C 1.48557 * 111.00401 * 179.36016 * 12 2 1 14 14 C 1.54381 * 104.59584 * 200.95773 * 13 12 2 15 15 C 1.54255 * 105.06054 * 23.85475 * 14 13 12 16 16 C 1.53006 * 110.32299 * 241.10267 * 15 14 13 17 17 C 1.53001 * 110.32415 * 118.99718 * 15 14 13 18 18 N 1.46900 * 109.46933 * 61.45290 * 17 15 14 19 19 C 1.48567 * 111.00208 * 63.93952 * 12 2 1 20 20 H 1.09006 * 109.47568 * 59.99542 * 1 2 3 21 21 H 1.09006 * 109.47116 * 300.00118 * 1 2 3 22 22 H 1.08996 * 109.47447 * 179.97438 * 1 2 3 23 23 H 0.97006 * 119.99854 * 180.02562 * 7 6 4 24 24 H 1.08996 * 110.41127 * 319.73607 * 13 12 2 25 25 H 1.08999 * 110.41150 * 82.05987 * 13 12 2 26 26 H 1.09005 * 110.32154 * 142.74721 * 14 13 12 27 27 H 1.09001 * 110.32335 * 264.85150 * 14 13 12 28 28 H 1.09003 * 109.47187 * 58.54501 * 16 15 14 29 29 H 1.08996 * 109.47104 * 178.54744 * 16 15 14 30 30 H 1.09001 * 109.47156 * 298.54828 * 16 15 14 31 31 H 1.08998 * 109.46706 * 181.44850 * 17 15 14 32 32 H 1.08997 * 109.47255 * 301.45254 * 17 15 14 33 33 H 1.00903 * 110.99850 * 179.97438 * 18 17 15 34 34 H 1.00893 * 111.00165 * 303.95414 * 18 17 15 35 35 H 1.08997 * 110.40794 * 277.81963 * 19 12 2 36 36 H 1.08997 * 110.40783 * 40.26316 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5771 -1.6379 1.1338 6 6 1.7964 -0.1763 2.4794 7 7 1.1326 0.9529 2.5970 8 14 2.4186 -1.0573 4.0046 9 1 3.7855 -0.5772 4.3307 10 1 1.5097 -0.7749 5.1446 11 1 2.4550 -2.5200 3.7512 12 7 2.0196 -0.6924 -1.1995 13 6 3.5046 -0.6989 -1.2416 14 6 3.8505 -0.9409 -2.7266 15 6 2.6125 -0.4587 -3.5103 16 6 2.0019 -1.6158 -4.3036 17 6 2.9919 0.6872 -4.4505 18 7 3.9850 0.2135 -5.4238 19 6 1.6226 0.0341 -2.4331 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 0.9670 1.3288 3.4758 24 1 3.8984 0.2622 -0.9114 25 1 3.8990 -1.5038 -0.6215 26 1 4.7282 -0.3600 -3.0104 27 1 4.0250 -2.0017 -2.9066 28 1 1.7258 -2.4190 -3.6204 29 1 1.1143 -1.2663 -4.8310 30 1 2.7305 -1.9865 -5.0246 31 1 2.1032 1.0339 -4.9777 32 1 3.4140 1.5081 -3.8709 33 1 4.2518 0.9525 -6.0570 34 1 4.7922 -0.1728 -4.9579 35 1 0.6000 -0.2203 -2.7116 36 1 1.7220 1.1100 -2.2891 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307034402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:59 Heat of formation + Delta-G solvation = -6.559506 kcal Electronic energy + Delta-G solvation = -14971.775168 eV Core-core repulsion = 12683.177801 eV Total energy + Delta-G solvation = -2288.597367 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.05211 -35.37881 -33.06671 -31.22343 -29.69982 -27.68485 -25.90162 -25.12245 -23.52477 -21.38476 -19.38923 -18.43533 -16.40533 -15.90779 -15.18192 -14.72819 -14.27388 -13.89660 -13.36129 -13.28870 -12.78971 -12.34640 -12.13355 -12.00347 -11.28614 -11.18016 -11.16098 -10.89711 -10.63547 -10.33250 -10.23941 -10.17484 -10.04399 -9.92824 -9.71155 -8.85075 -8.63384 -8.42739 -7.27248 -6.00824 -4.04048 3.30954 3.37571 3.42127 4.41854 4.57632 4.95470 5.01348 5.30143 5.32324 5.45140 5.62895 5.73075 5.84687 5.95622 6.02365 6.08558 6.29694 6.40583 6.51234 6.57231 6.68012 6.72638 6.78189 6.84925 7.06078 7.11129 7.14925 7.44020 7.47657 7.63148 7.85253 8.12112 8.31458 8.58662 9.03950 9.61108 11.07719 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051573 B = 0.007774 C = 0.007379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.788520 B = 3600.924135 C = 3793.733513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.201 3.799 3 H 0.003 0.997 4 C -0.502 4.502 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.502 5.502 13 C 0.050 3.950 14 C -0.115 4.115 15 C -0.064 4.064 16 C -0.119 4.119 17 C 0.074 3.926 18 N -0.848 5.848 19 C 0.042 3.958 20 H 0.008 0.992 21 H 0.074 0.926 22 H 0.035 0.965 23 H 0.260 0.740 24 H 0.033 0.967 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.024 0.976 33 H 0.335 0.665 34 H 0.339 0.661 35 H 0.071 0.929 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.061 -0.739 -11.519 12.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.095 3.905 3 H 0.020 0.980 4 C -0.540 4.540 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.227 5.227 13 C -0.079 4.079 14 C -0.154 4.154 15 C -0.065 4.065 16 C -0.177 4.177 17 C -0.057 4.057 18 N -0.378 5.378 19 C -0.087 4.087 20 H 0.027 0.973 21 H 0.093 0.907 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.090 0.910 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.178 -1.656 -11.564 12.106 hybrid contribution 1.217 1.311 1.418 2.283 sum 4.395 -0.345 -10.146 11.062 Atomic orbital electron populations 1.21726 0.97859 0.99482 0.99380 1.19427 0.92327 0.92239 0.86550 0.97982 1.21108 1.34916 1.08048 0.89975 0.92039 1.24947 0.95309 0.95005 0.99025 1.69930 1.40792 1.19100 1.23600 0.86542 0.78490 0.80121 0.82535 1.20834 1.21271 1.19811 1.65462 1.06743 1.48426 1.02062 1.22812 0.90667 1.00315 0.94083 1.22460 0.96097 1.00886 0.95922 1.21336 0.95748 0.95217 0.94231 1.21649 0.99696 0.97293 0.99013 1.21851 0.95554 0.95335 0.92997 1.58740 1.17787 1.38811 1.22475 1.23100 0.98324 0.95878 0.91386 0.97311 0.90713 0.94569 0.93026 0.94863 0.90672 0.92969 0.91412 0.92471 0.93666 0.92374 0.91252 0.95774 0.85315 0.84751 0.91030 0.95108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.97 37.16 0.33 -2.81 16 2 C 0.20 5.18 1.72 -68.87 -0.12 5.07 16 3 H 0.00 0.07 7.98 -51.93 -0.41 -0.34 16 4 C -0.50 -13.98 7.96 -34.44 -0.27 -14.25 16 5 H 0.06 1.72 7.18 -52.49 -0.38 1.34 16 6 C 0.06 1.63 5.33 -17.82 -0.09 1.54 16 7 N -0.90 -25.95 11.74 55.43 0.65 -25.30 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.50 -11.05 5.19 -223.41 -1.16 -12.20 16 13 C 0.05 0.99 5.71 -2.18 -0.01 0.98 16 14 C -0.12 -1.80 5.78 -25.35 -0.15 -1.95 16 15 C -0.06 -0.98 0.82 -153.13 -0.13 -1.11 16 16 C -0.12 -1.72 8.07 37.16 0.30 -1.42 16 17 C 0.07 0.97 5.53 -3.82 -0.02 0.94 16 18 N -0.85 -9.39 8.96 -10.37 -0.09 -9.48 16 19 C 0.04 0.79 4.60 -2.18 -0.01 0.78 16 20 H 0.01 0.18 7.05 -51.93 -0.37 -0.19 16 21 H 0.07 2.02 6.52 -51.93 -0.34 1.68 16 22 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.03 0.70 7.96 -51.93 -0.41 0.29 16 25 H 0.07 1.55 7.56 -51.93 -0.39 1.15 16 26 H 0.05 0.72 6.63 -51.93 -0.34 0.37 16 27 H 0.07 1.02 7.72 -51.93 -0.40 0.62 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.79 7.70 -51.93 -0.40 0.39 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.02 0.33 8.13 -51.93 -0.42 -0.09 16 33 H 0.34 3.03 9.08 -39.29 -0.36 2.68 16 34 H 0.34 3.59 7.32 -39.30 -0.29 3.30 16 35 H 0.07 1.32 7.41 -51.93 -0.38 0.94 16 36 H 0.03 0.60 7.63 -51.93 -0.40 0.20 16 LS Contribution 277.97 15.07 4.19 4.19 Total: -1.00 -28.90 277.97 -7.72 -36.62 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.12 Total: 1.86 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -0.17 Total: -12.23 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.60 Total: -46.99 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.90 -7.72 -36.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307034402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.059 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds