Wall clock time and date at job start Mon Mar 30 2020 03:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47337 * 2 1 4 4 C 1.50698 * 109.47428 * 120.00331 * 2 1 3 5 5 H 1.07989 * 120.00244 * 114.43197 * 4 2 1 6 6 C 1.37877 * 119.99425 * 294.43520 * 4 2 1 7 7 N 1.31509 * 120.00329 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99510 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47315 * 90.00140 * 8 6 4 10 10 H 1.48506 * 109.46671 * 209.99810 * 8 6 4 11 11 H 1.48494 * 109.47409 * 329.99735 * 8 6 4 12 12 N 1.46899 * 109.47114 * 240.00284 * 2 1 3 13 13 C 1.48557 * 111.00401 * 179.36016 * 12 2 1 14 14 C 1.54381 * 104.59584 * 200.95773 * 13 12 2 15 15 C 1.54255 * 105.06054 * 23.85475 * 14 13 12 16 16 C 1.53006 * 110.32299 * 241.10267 * 15 14 13 17 17 C 1.53001 * 110.32415 * 118.99718 * 15 14 13 18 18 N 1.46900 * 109.46933 * 61.45290 * 17 15 14 19 19 C 1.48567 * 111.00208 * 63.93952 * 12 2 1 20 20 H 1.09006 * 109.47568 * 59.99542 * 1 2 3 21 21 H 1.09006 * 109.47116 * 300.00118 * 1 2 3 22 22 H 1.08996 * 109.47447 * 179.97438 * 1 2 3 23 23 H 0.97006 * 119.99854 * 180.02562 * 7 6 4 24 24 H 1.08996 * 110.41127 * 319.73607 * 13 12 2 25 25 H 1.08999 * 110.41150 * 82.05987 * 13 12 2 26 26 H 1.09005 * 110.32154 * 142.74721 * 14 13 12 27 27 H 1.09001 * 110.32335 * 264.85150 * 14 13 12 28 28 H 1.09003 * 109.47187 * 58.54501 * 16 15 14 29 29 H 1.08996 * 109.47104 * 178.54744 * 16 15 14 30 30 H 1.09001 * 109.47156 * 298.54828 * 16 15 14 31 31 H 1.08998 * 109.46706 * 181.44850 * 17 15 14 32 32 H 1.08997 * 109.47255 * 301.45254 * 17 15 14 33 33 H 1.00903 * 110.99850 * 179.97438 * 18 17 15 34 34 H 1.00893 * 111.00165 * 303.95414 * 18 17 15 35 35 H 1.08997 * 110.40794 * 277.81963 * 19 12 2 36 36 H 1.08997 * 110.40783 * 40.26316 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5771 -1.6379 1.1338 6 6 1.7964 -0.1763 2.4794 7 7 1.1326 0.9529 2.5970 8 14 2.4186 -1.0573 4.0046 9 1 3.7855 -0.5772 4.3307 10 1 1.5097 -0.7749 5.1446 11 1 2.4550 -2.5200 3.7512 12 7 2.0196 -0.6924 -1.1995 13 6 3.5046 -0.6989 -1.2416 14 6 3.8505 -0.9409 -2.7266 15 6 2.6125 -0.4587 -3.5103 16 6 2.0019 -1.6158 -4.3036 17 6 2.9919 0.6872 -4.4505 18 7 3.9850 0.2135 -5.4238 19 6 1.6226 0.0341 -2.4331 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 0.9670 1.3288 3.4758 24 1 3.8984 0.2622 -0.9114 25 1 3.8990 -1.5038 -0.6215 26 1 4.7282 -0.3600 -3.0104 27 1 4.0250 -2.0017 -2.9066 28 1 1.7258 -2.4190 -3.6204 29 1 1.1143 -1.2663 -4.8310 30 1 2.7305 -1.9865 -5.0246 31 1 2.1032 1.0339 -4.9777 32 1 3.4140 1.5081 -3.8709 33 1 4.2518 0.9525 -6.0570 34 1 4.7922 -0.1728 -4.9579 35 1 0.6000 -0.2203 -2.7116 36 1 1.7220 1.1100 -2.2891 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307034402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:59 Heat of formation + Delta-G solvation = -27.621963 kcal Electronic energy + Delta-G solvation = -14972.688504 eV Core-core repulsion = 12683.177801 eV Total energy + Delta-G solvation = -2289.510704 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.51127 -36.95115 -34.79309 -32.81995 -31.20079 -29.38638 -27.50784 -26.79280 -24.92789 -23.04006 -21.26409 -19.75495 -18.35038 -17.32032 -16.72747 -16.30557 -15.66827 -15.36713 -14.91935 -14.65097 -14.52916 -13.91172 -13.70788 -13.32169 -13.10302 -12.84963 -12.74780 -12.56349 -12.53363 -12.18577 -12.02588 -11.71373 -11.47571 -11.44877 -11.30295 -10.90287 -10.56705 -9.54590 -9.09336 -8.15625 -6.26583 1.39417 1.40666 1.51777 2.40277 3.14701 3.35773 3.59696 3.78586 3.98450 4.12807 4.35803 4.45917 4.53183 4.69588 4.74422 4.79031 4.84795 4.87282 4.96778 5.01137 5.09471 5.13989 5.26526 5.35847 5.39870 5.43670 5.54445 5.68721 5.70859 6.16435 6.24673 6.31547 6.62935 6.66567 6.88794 7.43085 8.92445 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051573 B = 0.007774 C = 0.007379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.788520 B = 3600.924135 C = 3793.733513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.206 3.794 3 H -0.035 1.035 4 C -0.519 4.519 5 H 0.055 0.945 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.960 3.040 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.268 1.268 12 N -0.512 5.512 13 C 0.047 3.953 14 C -0.103 4.103 15 C -0.058 4.058 16 C -0.112 4.112 17 C 0.081 3.919 18 N -0.845 5.845 19 C 0.040 3.960 20 H 0.029 0.971 21 H 0.049 0.951 22 H 0.034 0.966 23 H 0.262 0.738 24 H 0.013 0.987 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.017 0.983 33 H 0.350 0.650 34 H 0.344 0.656 35 H 0.073 0.927 36 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.862 -1.507 -12.791 13.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.099 3.901 3 H -0.018 1.018 4 C -0.557 4.557 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.193 1.193 12 N -0.236 5.236 13 C -0.082 4.082 14 C -0.141 4.141 15 C -0.058 4.058 16 C -0.169 4.169 17 C -0.050 4.050 18 N -0.376 5.376 19 C -0.088 4.088 20 H 0.048 0.952 21 H 0.068 0.932 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.032 0.968 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.035 0.965 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.091 0.909 36 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 3.991 -2.427 -12.864 13.685 hybrid contribution 0.965 1.572 1.776 2.560 sum 4.955 -0.855 -11.088 12.175 Atomic orbital electron populations 1.21549 0.97383 0.99197 0.99154 1.19215 0.92686 0.90268 0.87938 1.01797 1.21360 1.35128 1.07997 0.91239 0.92670 1.25749 0.95405 0.95686 1.02010 1.70052 1.41605 1.20316 1.24347 0.85517 0.78106 0.79065 0.78734 1.20106 1.20724 1.19269 1.65372 1.08129 1.48224 1.01883 1.22831 0.89365 0.98798 0.97167 1.22403 0.97148 1.02108 0.92465 1.21288 0.94489 0.96374 0.93697 1.21583 1.00330 0.96266 0.98750 1.21687 0.96449 0.93982 0.92903 1.58683 1.17707 1.39327 1.21921 1.23170 0.99563 0.95025 0.91087 0.95216 0.93188 0.94674 0.92894 0.96834 0.91897 0.90612 0.90259 0.93926 0.92904 0.90993 0.90692 0.96502 0.83681 0.84205 0.90857 0.96220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.80 8.97 71.98 0.65 -5.16 16 2 C 0.21 10.93 1.72 44.17 0.08 11.01 16 3 H -0.04 -2.11 7.98 -2.38 -0.02 -2.13 16 4 C -0.52 -29.48 7.96 25.60 0.20 -29.28 16 5 H 0.06 3.13 7.18 -2.92 -0.02 3.11 16 6 C 0.01 0.57 5.33 84.66 0.45 1.02 16 7 N -0.92 -54.59 11.74 21.45 0.25 -54.34 16 8 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 N -0.51 -22.70 5.19 -860.73 -4.47 -27.16 16 13 C 0.05 1.87 5.71 86.45 0.49 2.36 16 14 C -0.10 -3.02 5.78 31.49 0.18 -2.84 16 15 C -0.06 -1.64 0.82 -51.29 -0.04 -1.68 16 16 C -0.11 -2.94 8.07 71.98 0.58 -2.36 16 17 C 0.08 1.92 5.53 86.30 0.48 2.40 16 18 N -0.84 -15.85 8.96 -186.72 -1.67 -17.52 16 19 C 0.04 1.49 4.60 86.45 0.40 1.88 16 20 H 0.03 1.32 7.05 -2.38 -0.02 1.30 16 21 H 0.05 2.76 6.52 -2.38 -0.02 2.74 16 22 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 24 H 0.01 0.58 7.96 -2.39 -0.02 0.56 16 25 H 0.06 2.62 7.56 -2.39 -0.02 2.60 16 26 H 0.08 1.88 6.63 -2.38 -0.02 1.86 16 27 H 0.08 2.17 7.72 -2.39 -0.02 2.16 16 28 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.71 7.70 -2.39 -0.02 1.69 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.02 0.43 8.13 -2.39 -0.02 0.41 16 33 H 0.35 5.14 9.08 -89.69 -0.81 4.33 16 34 H 0.34 6.03 7.32 -89.70 -0.66 5.38 16 35 H 0.07 2.65 7.41 -2.39 -0.02 2.63 16 36 H 0.02 0.76 7.63 -2.39 -0.02 0.75 16 Total: -1.00 -62.25 277.97 -0.81 -63.07 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -0.42 Total: 12.05 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 3.47 Total: -22.63 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -5.89 Total: -99.02 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -62.25 -0.81 -63.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307034402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.444 kcal (2) G-P(sol) polarization free energy of solvation -62.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds