Wall clock time and date at job start Mon Mar 30 2020 03:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46561 * 2 1 4 4 C 1.50700 * 109.46980 * 240.00038 * 2 1 3 5 5 H 1.07995 * 120.00176 * 239.99602 * 4 2 1 6 6 C 1.37880 * 119.99949 * 60.00129 * 4 2 1 7 7 N 1.31517 * 120.00071 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99931 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47178 * 90.00335 * 8 6 4 10 10 H 1.48506 * 109.46937 * 209.99473 * 8 6 4 11 11 H 1.48491 * 109.47288 * 330.00060 * 8 6 4 12 12 N 1.46900 * 109.47175 * 120.00269 * 2 1 3 13 13 C 1.48534 * 110.99970 * 299.11636 * 12 2 1 14 14 C 1.54928 * 103.37819 * 200.19533 * 13 12 2 15 15 C 1.55041 * 102.71659 * 37.40422 * 14 13 12 16 16 C 1.52995 * 110.36440 * 97.04641 * 15 14 13 17 17 C 1.52999 * 110.29952 * 219.14349 * 15 14 13 18 18 N 1.46900 * 109.47275 * 295.76282 * 17 15 14 19 19 C 1.47897 * 110.99673 * 181.72337 * 12 2 1 20 20 H 1.08998 * 109.47115 * 303.59278 * 1 2 3 21 21 H 1.08997 * 109.47293 * 63.59710 * 1 2 3 22 22 H 1.09008 * 109.47009 * 183.59885 * 1 2 3 23 23 H 0.96993 * 120.00170 * 180.02562 * 7 6 4 24 24 H 1.08999 * 110.66948 * 318.71956 * 13 12 2 25 25 H 1.09007 * 110.66476 * 81.68039 * 13 12 2 26 26 H 1.09003 * 110.72584 * 155.85958 * 14 13 12 27 27 H 1.08997 * 110.72792 * 279.14439 * 14 13 12 28 28 H 1.08999 * 109.47001 * 304.19976 * 16 15 14 29 29 H 1.08998 * 109.47301 * 64.19722 * 16 15 14 30 30 H 1.09005 * 109.47356 * 184.20460 * 16 15 14 31 31 H 1.08998 * 109.47152 * 55.75857 * 17 15 14 32 32 H 1.08999 * 109.47356 * 175.76064 * 17 15 14 33 33 H 1.00895 * 111.00664 * 179.97438 * 18 17 15 34 34 H 1.00903 * 110.99501 * 303.95404 * 18 17 15 35 35 H 1.09001 * 109.91942 * 265.19016 * 19 12 2 36 36 H 1.08999 * 109.92168 * 26.49024 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.3447 -2.1614 -4.4125 10 1 2.4871 -0.1401 -5.1121 11 1 3.6307 -1.7565 -3.7120 12 7 2.0197 -0.6925 1.1994 13 6 1.5610 -0.0068 2.4346 14 6 2.5516 -0.5113 3.5136 15 6 3.8933 -0.5804 2.7396 16 6 4.7174 0.6843 2.9890 17 6 4.6850 -1.8204 3.1594 18 7 5.0526 -1.7099 4.5774 19 6 3.4976 -0.6764 1.2544 20 1 -0.3633 0.5686 0.8560 21 1 -0.3634 0.4570 -0.9204 22 1 -0.3633 -1.0257 0.0645 23 1 0.7081 1.1609 -3.4843 24 1 1.6319 1.0751 2.3229 25 1 0.5407 -0.3008 2.6815 26 1 2.6153 0.1966 4.3400 27 1 2.2616 -1.4990 3.8720 28 1 4.1279 1.5609 2.7204 29 1 4.9898 0.7386 4.0430 30 1 5.6217 0.6544 2.3810 31 1 4.0727 -2.7099 3.0112 32 1 5.5887 -1.8965 2.5547 33 1 5.5764 -2.5177 4.8793 34 1 5.5664 -0.8593 4.7525 35 1 3.8953 -1.5949 0.8229 36 1 3.8800 0.1881 0.7117 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307034403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:02 Heat of formation + Delta-G solvation = -4.625088 kcal Electronic energy + Delta-G solvation = -15003.471264 eV Core-core repulsion = 12714.957779 eV Total energy + Delta-G solvation = -2288.513484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.00585 -35.39970 -33.12061 -31.20534 -29.18869 -28.14951 -26.01752 -25.05955 -23.16274 -21.54863 -19.34944 -18.40096 -16.24656 -15.94664 -14.99368 -14.97866 -14.17565 -14.00851 -13.53993 -13.11308 -12.75585 -12.36395 -11.96600 -11.80797 -11.67096 -11.22129 -11.04849 -10.83112 -10.60462 -10.45382 -10.20128 -10.08679 -10.00558 -9.87903 -9.68166 -8.85781 -8.57892 -8.38635 -7.17347 -5.97730 -4.02299 3.32236 3.38353 3.41728 4.43751 4.64851 5.02222 5.09786 5.16004 5.29995 5.39732 5.72949 5.73090 5.81490 5.93509 6.05487 6.10035 6.29266 6.32358 6.49745 6.53419 6.67504 6.78779 6.82125 6.89041 7.11355 7.15194 7.21015 7.47780 7.53676 7.71506 7.86978 8.23183 8.38653 8.62139 9.04903 9.62766 11.08905 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040160 B = 0.008585 C = 0.007688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.036430 B = 3260.782073 C = 3641.110424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.204 3.796 3 H -0.002 1.002 4 C -0.500 4.500 5 H 0.060 0.940 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.510 5.510 13 C 0.032 3.968 14 C -0.095 4.095 15 C -0.076 4.076 16 C -0.138 4.138 17 C 0.078 3.922 18 N -0.850 5.850 19 C 0.063 3.937 20 H 0.006 0.994 21 H 0.086 0.914 22 H 0.033 0.967 23 H 0.260 0.740 24 H 0.030 0.970 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.023 0.977 33 H 0.335 0.665 34 H 0.336 0.664 35 H 0.067 0.933 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.454 -1.740 10.547 12.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.097 3.903 3 H 0.016 0.984 4 C -0.538 4.538 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.235 5.235 13 C -0.096 4.096 14 C -0.133 4.133 15 C -0.077 4.077 16 C -0.196 4.196 17 C -0.052 4.052 18 N -0.380 5.380 19 C -0.066 4.066 20 H 0.025 0.975 21 H 0.104 0.896 22 H 0.052 0.948 23 H 0.070 0.930 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.085 0.915 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.382 -2.145 10.477 11.972 hybrid contribution 1.559 0.441 -1.326 2.094 sum 6.941 -1.704 9.151 11.611 Atomic orbital electron populations 1.21795 0.97731 0.99057 1.00450 1.19428 0.92483 0.91879 0.86470 0.98425 1.21134 1.30741 1.12149 0.89817 0.92139 1.24939 0.95310 0.95090 0.98998 1.69891 1.37096 1.23102 1.23321 0.86535 0.79217 0.79311 0.82557 1.20666 1.21364 1.19991 1.64865 1.05761 1.50598 1.02302 1.23169 0.98726 0.96098 0.91653 1.22467 0.93301 1.01177 0.96381 1.21594 0.95598 0.94016 0.96490 1.21880 0.99564 0.97545 1.00574 1.21843 0.97663 0.98491 0.87226 1.58764 1.52138 1.07164 1.19897 1.22656 0.90607 1.01025 0.92291 0.97479 0.89593 0.94818 0.93040 0.95175 0.91265 0.92215 0.91116 0.92536 0.92777 0.93113 0.90627 0.95926 0.85333 0.85046 0.91494 0.93836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 8.80 37.16 0.33 -3.02 16 2 C 0.20 5.31 1.74 -68.86 -0.12 5.19 16 3 H 0.00 -0.05 8.00 -51.93 -0.42 -0.47 16 4 C -0.50 -14.01 8.12 -34.44 -0.28 -14.28 16 5 H 0.06 1.70 7.36 -52.49 -0.39 1.31 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.93 11.30 55.43 0.63 -25.31 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.51 -11.39 5.10 -223.88 -1.14 -12.53 16 13 C 0.03 0.61 5.45 -1.90 -0.01 0.60 16 14 C -0.10 -1.53 5.94 -24.64 -0.15 -1.67 16 15 C -0.08 -1.19 0.76 -152.91 -0.12 -1.30 16 16 C -0.14 -1.90 7.90 37.16 0.29 -1.61 16 17 C 0.08 1.07 5.44 -3.82 -0.02 1.05 16 18 N -0.85 -9.58 9.33 -10.37 -0.10 -9.68 16 19 C 0.06 1.26 5.09 -2.75 -0.01 1.25 16 20 H 0.01 0.14 7.14 -51.93 -0.37 -0.23 16 21 H 0.09 2.37 5.98 -51.93 -0.31 2.06 16 22 H 0.03 0.83 8.14 -51.92 -0.42 0.41 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.03 0.59 7.99 -51.93 -0.41 0.18 16 25 H 0.07 1.30 7.74 -51.92 -0.40 0.90 16 26 H 0.06 0.88 7.87 -51.93 -0.41 0.47 16 27 H 0.07 1.15 7.85 -51.93 -0.41 0.75 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.63 6.51 -51.93 -0.34 0.30 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.11 8.11 -51.93 -0.42 0.69 16 32 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.34 3.12 9.08 -39.29 -0.36 2.76 16 34 H 0.34 3.43 6.99 -39.29 -0.27 3.15 16 35 H 0.07 1.36 7.50 -51.93 -0.39 0.97 16 36 H 0.04 0.94 7.24 -51.93 -0.38 0.56 16 LS Contribution 277.36 15.07 4.18 4.18 Total: -1.00 -29.06 277.36 -7.73 -36.79 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.10 Total: 2.21 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -0.18 Total: -12.29 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -0.61 Total: -47.52 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.06 -7.73 -36.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307034403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.165 kcal (2) G-P(sol) polarization free energy of solvation -29.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds